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Items: 18

1.

Comparative genomics provides new insights into the remarkable adaptations of the African wild dog (Lycaon pictus).

Chavez DE, Gronau I, Hains T, Kliver S, Koepfli KP, Wayne RK.

Sci Rep. 2019 Jun 6;9(1):8329. doi: 10.1038/s41598-019-44772-5.

2.

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations.

Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Pinto PV, Ferrand N, Maldonado JE, Ferrie GM, Chemnick L, Ryder OA, Johnson WE, Comizzoli P, O'Brien SJ, Pukazhenthi BS.

G3 (Bethesda). 2019 Jun 5;9(6):1785-1793. doi: 10.1534/g3.119.400084.

3.

Genome-wide sequence analyses of ethnic populations across Russia.

Zhernakova DV, Brukhin V, Malov S, Oleksyk TK, Koepfli KP, Zhuk A, Dobrynin P, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Gorbunova A, Chernyaeva E, Shevchenko A, Kolchanova S, Komissarov A, Simonov S, Antonik A, Logachev A, Polev DE, Pavlova OA, Glotov AS, Ulantsev V, Noskova E, Davydova TK, Sivtseva TM, Limborska S, Balanovsky O, Osakovsky V, Novozhilov A, Puzyrev V, O'Brien SJ.

Genomics. 2019 Mar 19. pii: S0888-7543(18)30741-9. doi: 10.1016/j.ygeno.2019.03.007. [Epub ahead of print]

PMID:
30902755
4.

White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability.

Marra NJ, Stanhope MJ, Jue NK, Wang M, Sun Q, Pavinski Bitar P, Richards VP, Komissarov A, Rayko M, Kliver S, Stanhope BJ, Winkler C, O'Brien SJ, Antunes A, Jorgensen S, Shivji MS.

Proc Natl Acad Sci U S A. 2019 Feb 19. pii: 201819778. doi: 10.1073/pnas.1819778116. [Epub ahead of print]

PMID:
30782839
5.

Genomes of Three Closely Related Caribbean Amazons Provide Insight for Species History and Conservation.

Kolchanova S, Kliver S, Komissarov A, Dobrinin P, Tamazian G, Grigorev K, Wolfsberger WW, Majeske AJ, Velez-Valentin J, Valentin de la Rosa R, Paul-Murphy JR, Guzman DS, Court MH, Rodriguez-Flores JL, Martínez-Cruzado JC, Oleksyk TK.

Genes (Basel). 2019 Jan 16;10(1). pii: E54. doi: 10.3390/genes10010054.

6.

Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis.

Zhernakova DV, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Dobrynin P, Yurchenko AA, Shimansky V, Shcherbakova IV, Glotov AS, Valle DL, Tang M, Shin E, Schwarz KB, O'Brien SJ.

PLoS One. 2018 Jul 11;13(7):e0200423. doi: 10.1371/journal.pone.0200423. eCollection 2018.

7.

Exploring Proteins Containing Amyloidogenic Regions in the Proteomes of Bacteria of the Order Rhizobiales.

Antonets KS, Kliver SF, Nizhnikov AA.

Evol Bioinform Online. 2018 Apr 9;14:1176934318768781. doi: 10.1177/1176934318768781. eCollection 2018.

8.

Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola.

Grigorev K, Kliver S, Dobrynin P, Komissarov A, Wolfsberger W, Krasheninnikova K, Afanador-Hernández YM, Brandt AL, Paulino LA, Carreras R, Rodríguez LE, Núñez A, Brandt JR, Silva F, Hernández-Martich JD, Majeske AJ, Antunes A, Roca AL, O'Brien SJ, Martínez-Cruzado JC, Oleksyk TK.

Gigascience. 2018 Jun 1;7(6). doi: 10.1093/gigascience/giy025.

9.

Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes.

Kliver S, Rayko M, Komissarov A, Bakin E, Zhernakova D, Prasad K, Rushworth C, Baskar R, Smetanin D, Schmutz J, Rokhsar DS, Mitchell-Olds T, Grossniklaus U, Brukhin V.

Genes (Basel). 2018 Mar 28;9(4). pii: E185. doi: 10.3390/genes9040185.

10.

Corrigendum to "Identification of potential early biomarkers of preeclampsia" [Placenta (2018) 61-71].

Timofeeva AV, Gusar VA, Kan NE, Prozorovskaya KN, Karapetyan AO, Bayev OR, Chagovets VV, Kliver SF, Iakovishina DY, Frankevich VE, Sukhikh GT.

Placenta. 2018 Mar;63:61. doi: 10.1016/j.placenta.2018.01.007. Epub 2018 Jan 20. No abstract available.

PMID:
29370940
11.

Recombination Is Responsible for the Increased Recovery of Drug-Resistant Mutants with Hypermutated Genomes in Resting Yeast Diploids Expressing APOBEC Deaminases.

Lada AG, Stepchenkova EI, Zhuk AS, Kliver SF, Rogozin IB, Polev DE, Dhar A, Pavlov YI.

Front Genet. 2017 Dec 12;8:202. doi: 10.3389/fgene.2017.00202. eCollection 2017.

12.

Identification of potential early biomarkers of preeclampsia.

Timofeeva AV, Gusar VA, Kan NE, Prozorovskaya KN, Karapetyan AO, Bayev OR, Chagovets VV, Kliver SF, Iakovishina DY, Frankevich VE, Sukhikh GT.

Placenta. 2018 Jan;61:61-71. doi: 10.1016/j.placenta.2017.11.011. Epub 2017 Nov 21. Erratum in: Placenta. 2018 Jan 20;:.

PMID:
29277273
13.

Distinct Mechanisms of Phenotypic Effects of Inactivation and Prionization of Swi1 Protein in Saccharomyces cerevisiae.

Antonets KS, Kliver SF, Polev DE, Shuvalova AR, Andreeva EA, Inge-Vechtomov SG, Nizhnikov AA.

Biochemistry (Mosc). 2017 Oct;82(10):1147-1157. doi: 10.1134/S0006297917100078.

PMID:
29037135
14.

RNA-binding proteins of the NXF (nuclear export factor) family and their connection with the cytoskeleton.

Mamon LA, Ginanova VR, Kliver SF, Yakimova AO, Atsapkina AA, Golubkova EV.

Cytoskeleton (Hoboken). 2017 Apr;74(4):161-169. doi: 10.1002/cm.21362. Epub 2017 Apr 1. Review.

PMID:
28296067
15.

Pangolin genomes and the evolution of mammalian scales and immunity.

Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko AA, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, Kotze A, Dalton DL, Vermaak E, Paterson IC, Dobrynin P, Sitam FT, Rovie-Ryan JJ, Johnson WE, Yusoff AM, Luo SJ, Karuppannan KV, Fang G, Zheng D, Gerstein MB, Lipovich L, O'Brien SJ, Wong GJ.

Genome Res. 2016 Oct;26(10):1312-1322. Epub 2016 Aug 10.

16.

Genomic legacy of the African cheetah, Acinonyx jubatus.

Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel Md, Godinez R, Komissarov A, Makunin A, Brukhin V, Qiu W, Zhou L, Li F, Yi J, Driscoll C, Antunes A, Oleksyk TK, Eizirik E, Perelman P, Roelke M, Wildt D, Diekhans M, Marques-Bonet T, Marker L, Bhak J, Wang J, Zhang G, O'Brien SJ.

Genome Biol. 2015 Dec 10;16:277. doi: 10.1186/s13059-015-0837-4.

17.

Testis-specific products of the Drosophila melanogaster sbr gene, encoding nuclear export factor 1, are necessary for male fertility.

Ginanova V, Golubkova E, Kliver S, Bychkova E, Markoska K, Ivankova N, Tretyakova I, Evgen'ev M, Mamon L.

Gene. 2016 Feb 15;577(2):153-60. doi: 10.1016/j.gene.2015.11.030. Epub 2015 Nov 24.

PMID:
26621383
18.

Disruption of Transcriptional Coactivator Sub1 Leads to Genome-Wide Re-distribution of Clustered Mutations Induced by APOBEC in Active Yeast Genes.

Lada AG, Kliver SF, Dhar A, Polev DE, Masharsky AE, Rogozin IB, Pavlov YI.

PLoS Genet. 2015 May 5;11(5):e1005217. doi: 10.1371/journal.pgen.1005217. eCollection 2015 May.

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