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Items: 1 to 50 of 127

1.

Adaptations of the Secretome of Candida albicans in Response to Host-Related Environmental Conditions.

Klis FM, Brul S.

Eukaryot Cell. 2015 Dec;14(12):1165-72. doi: 10.1128/EC.00142-15. Epub 2015 Oct 9. Review.

2.

Mutations in SNF1 complex genes affect yeast cell wall strength.

Backhaus K, Rippert D, Heilmann CJ, Sorgo AG, de Koster CG, Klis FM, Rodicio R, Heinisch JJ.

Eur J Cell Biol. 2013 Dec;92(12):383-95. doi: 10.1016/j.ejcb.2014.01.001. Epub 2014 Jan 10.

PMID:
24486034
3.

Role of retrograde trafficking in stress response, host cell interactions, and virulence of Candida albicans.

Liu Y, Solis NV, Heilmann CJ, Phan QT, Mitchell AP, Klis FM, Filler SG.

Eukaryot Cell. 2014 Feb;13(2):279-87. doi: 10.1128/EC.00295-13. Epub 2013 Dec 20.

4.

Cell wall-related bionumbers and bioestimates of Saccharomyces cerevisiae and Candida albicans.

Klis FM, de Koster CG, Brul S.

Eukaryot Cell. 2014 Jan;13(1):2-9. doi: 10.1128/EC.00250-13. Epub 2013 Nov 15. Review.

5.

The transcriptional repressor TupA in Aspergillus niger is involved in controlling gene expression related to cell wall biosynthesis, development, and nitrogen source availability.

Schachtschabel D, Arentshorst M, Nitsche BM, Morris S, Nielsen KF, van den Hondel CA, Klis FM, Ram AF.

PLoS One. 2013 Oct 29;8(10):e78102. doi: 10.1371/journal.pone.0078102. eCollection 2013.

6.

Iron restriction-induced adaptations in the wall proteome of Candida albicans.

Sorgo AG, Brul S, de Koster CG, de Koning LJ, Klis FM.

Microbiology. 2013 Aug;159(Pt 8):1673-1682. doi: 10.1099/mic.0.065599-0. Epub 2013 May 31.

PMID:
23728625
7.

News from the fungal front: wall proteome dynamics and host-pathogen interplay.

Heilmann CJ, Sorgo AG, Klis FM.

PLoS Pathog. 2012 Dec;8(12):e1003050. doi: 10.1371/journal.ppat.1003050. Epub 2012 Dec 27. Review. No abstract available.

8.

Surface stress induces a conserved cell wall stress response in the pathogenic fungus Candida albicans.

Heilmann CJ, Sorgo AG, Mohammadi S, Sosinska GJ, de Koster CG, Brul S, de Koning LJ, Klis FM.

Eukaryot Cell. 2013 Feb;12(2):254-64. doi: 10.1128/EC.00278-12. Epub 2012 Dec 14.

9.

Beyond the wall: Candida albicans secret(e)s to survive.

Sorgo AG, Heilmann CJ, Brul S, de Koster CG, Klis FM.

FEMS Microbiol Lett. 2013 Jan;338(1):10-7. doi: 10.1111/1574-6968.12049. Epub 2012 Nov 30. Review.

10.

Carbon source-induced reprogramming of the cell wall proteome and secretome modulates the adherence and drug resistance of the fungal pathogen Candida albicans.

Ene IV, Heilmann CJ, Sorgo AG, Walker LA, de Koster CG, Munro CA, Klis FM, Brown AJ.

Proteomics. 2012 Nov;12(21):3164-79. doi: 10.1002/pmic.201200228.

11.

A mass spectrometric view of the fungal wall proteome.

Klis FM, de Koster CG, Brul S.

Future Microbiol. 2011 Aug;6(8):941-51. doi: 10.2217/FMB.11.72. Review.

PMID:
21861624
12.

Identification and differential gene expression of adhesin-like wall proteins in Candida glabrata biofilms.

Kraneveld EA, de Soet JJ, Deng DM, Dekker HL, de Koster CG, Klis FM, Crielaard W, de Groot PW.

Mycopathologia. 2011 Dec;172(6):415-27. doi: 10.1007/s11046-011-9446-2. Epub 2011 Jul 17.

PMID:
21769633
13.

Growth-dependent secretome of Candida utilis.

Buerth C, Heilmann CJ, Klis FM, de Koster CG, Ernst JF, Tielker D.

Microbiology. 2011 Sep;157(Pt 9):2493-2503. doi: 10.1099/mic.0.049320-0. Epub 2011 Jun 16.

PMID:
21680638
14.

Effects of fluconazole on the secretome, the wall proteome, and wall integrity of the clinical fungus Candida albicans.

Sorgo AG, Heilmann CJ, Dekker HL, Bekker M, Brul S, de Koster CG, de Koning LJ, Klis FM.

Eukaryot Cell. 2011 Aug;10(8):1071-81. doi: 10.1128/EC.05011-11. Epub 2011 May 27.

15.

Hyphal induction in the human fungal pathogen Candida albicans reveals a characteristic wall protein profile.

Heilmann CJ, Sorgo AG, Siliakus AR, Dekker HL, Brul S, de Koster CG, de Koning LJ, Klis FM.

Microbiology. 2011 Aug;157(Pt 8):2297-2307. doi: 10.1099/mic.0.049395-0. Epub 2011 May 20.

PMID:
21602216
16.

Mass spectrometric quantification of the adaptations in the wall proteome of Candida albicans in response to ambient pH.

Sosinska GJ, de Koning LJ, de Groot PWJ, Manders EMM, Dekker HL, Hellingwerf KJ, de Koster CG, Klis FM.

Microbiology. 2011 Jan;157(Pt 1):136-146. doi: 10.1099/mic.0.044206-0. Epub 2010 Sep 23.

PMID:
20864472
17.

Comparative analysis of transcriptome and fitness profiles reveals general and condition-specific cellular functions involved in adaptation to environmental change in Saccharomyces cerevisiae.

Zakrzewska A, Boorsma A, Beek AT, Hageman JA, Westerhuis JA, Hellingwerf KJ, Brul S, Klis FM, Smits GJ.

OMICS. 2010 Oct;14(5):603-14. doi: 10.1089/omi.2010.0049. Epub 2010 Aug 9.

PMID:
20695823
18.

A systematic study of the cell wall composition of Kluyveromyces lactis.

Backhaus K, Heilmann CJ, Sorgo AG, Purschke G, de Koster CG, Klis FM, Heinisch JJ.

Yeast. 2010 Aug;27(8):647-60. doi: 10.1002/yea.1781.

19.

Mass spectrometric analysis of the secretome of Candida albicans.

Sorgo AG, Heilmann CJ, Dekker HL, Brul S, de Koster CG, Klis FM.

Yeast. 2010 Aug;27(8):661-72. doi: 10.1002/yea.1775.

20.

The Candida albicans cell wall protein Rhd3/Pga29 is abundant in the yeast form and contributes to virulence.

de Boer AD, de Groot PW, Weindl G, Schaller M, Riedel D, Diez-Orejas R, Klis FM, de Koster CG, Dekker HL, Gross U, Bader O, Weig M.

Yeast. 2010 Aug;27(8):611-24. doi: 10.1002/yea.1790.

21.

Covalently linked wall proteins in ascomycetous fungi.

Klis FM, Brul S, De Groot PW.

Yeast. 2010 Aug;27(8):489-93. doi: 10.1002/yea.1747. Review.

22.

Covalently linked cell wall proteins of Candida albicans and their role in fitness and virulence.

Klis FM, Sosinska GJ, de Groot PW, Brul S.

FEMS Yeast Res. 2009 Oct;9(7):1013-28. doi: 10.1111/j.1567-1364.2009.00541.x. Epub 2009 Jun 22. Review.

23.

Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans.

de Groot PW, Brandt BW, Horiuchi H, Ram AF, de Koster CG, Klis FM.

Fungal Genet Biol. 2009 Mar;46 Suppl 1:S72-81.

PMID:
19585695
24.

Evolution of pathogenicity and sexual reproduction in eight Candida genomes.

Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA.

Nature. 2009 Jun 4;459(7247):657-62. doi: 10.1038/nature08064.

25.

The GPI-modified proteins Pga59 and Pga62 of Candida albicans are required for cell wall integrity.

Moreno-Ruiz E, Ortu G, de Groot PWJ, Cottier F, Loussert C, Prévost MC, de Koster C, Klis FM, Goyard S, d'Enfert C.

Microbiology. 2009 Jun;155(Pt 6):2004-2020. doi: 10.1099/mic.0.028902-0. Epub 2009 Apr 21.

PMID:
19383685
26.

Molecular and cellular mechanisms that lead to Candida biofilm formation.

ten Cate JM, Klis FM, Pereira-Cenci T, Crielaard W, de Groot PW.

J Dent Res. 2009 Feb;88(2):105-15. doi: 10.1177/0022034508329273. Review.

PMID:
19278980
27.

The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G, Coutinho P, von Döhren H, Doonan J, Driessen AJ, Durek P, Espeso E, Fekete E, Flipphi M, Estrada CG, Geysens S, Goldman G, de Groot PW, Hansen K, Harris SD, Heinekamp T, Helmstaedt K, Henrissat B, Hofmann G, Homan T, Horio T, Horiuchi H, James S, Jones M, Karaffa L, Karányi Z, Kato M, Keller N, Kelly DE, Kiel JA, Kim JM, van der Klei IJ, Klis FM, Kovalchuk A, Krasevec N, Kubicek CP, Liu B, Maccabe A, Meyer V, Mirabito P, Miskei M, Mos M, Mullins J, Nelson DR, Nielsen J, Oakley BR, Osmani SA, Pakula T, Paszewski A, Paulsen I, Pilsyk S, Pócsi I, Punt PJ, Ram AF, Ren Q, Robellet X, Robson G, Seiboth B, van Solingen P, Specht T, Sun J, Taheri-Talesh N, Takeshita N, Ussery D, vanKuyk PA, Visser H, van de Vondervoort PJ, de Vries RP, Walton J, Xiang X, Xiong Y, Zeng AP, Brandt BW, Cornell MJ, van den Hondel CA, Visser J, Oliver SG, Turner G.

Fungal Genet Biol. 2009 Mar;46 Suppl 1:S2-13. doi: 10.1016/j.fgb.2008.12.003. Epub 2008 Dec 25.

28.

The cell wall of the human pathogen Candida glabrata: differential incorporation of novel adhesin-like wall proteins.

de Groot PW, Kraneveld EA, Yin QY, Dekker HL, Gross U, Crielaard W, de Koster CG, Bader O, Klis FM, Weig M.

Eukaryot Cell. 2008 Nov;7(11):1951-64. doi: 10.1128/EC.00284-08. Epub 2008 Sep 19.

29.

Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression.

Boorsma A, Lu XJ, Zakrzewska A, Klis FM, Bussemaker HJ.

PLoS One. 2008 Sep 3;3(9):e3112. doi: 10.1371/journal.pone.0003112.

30.

A genomic approach for the identification and classification of genes involved in cell wall formation and its regulation in Saccharomyces cerevisiae.

de Groot PW, Ruiz C, Vázquez de Aldana CR, Duenas E, Cid VJ, Del Rey F, Rodríquez-Peña JM, Pérez P, Andel A, Caubín J, Arroyo J, García JC, Gil C, Molina M, García LJ, Nombela C, Klis FM.

Comp Funct Genomics. 2001;2(3):124-42. doi: 10.1002/cfg.85.

31.

The conserved PA14 domain of cell wall-associated fungal adhesins governs their glycan-binding specificity.

de Groot PW, Klis FM.

Mol Microbiol. 2008 May;68(3):535-7. doi: 10.1111/j.1365-2958.2008.06182.x. Epub 2008 Mar 4.

32.

A novel screening method for cell wall mutants in Aspergillus niger identifies UDP-galactopyranose mutase as an important protein in fungal cell wall biosynthesis.

Damveld RA, Franken A, Arentshorst M, Punt PJ, Klis FM, van den Hondel CA, Ram AF.

Genetics. 2008 Feb;178(2):873-81. doi: 10.1534/genetics.107.073148. Epub 2008 Feb 3.

33.

Hypoxic conditions and iron restriction affect the cell-wall proteome of Candida albicans grown under vagina-simulative conditions.

Sosinska GJ, de Groot PWJ, Teixeira de Mattos MJ, Dekker HL, de Koster CG, Hellingwerf KJ, Klis FM.

Microbiology. 2008 Feb;154(Pt 2):510-520. doi: 10.1099/mic.0.2007/012617-0.

PMID:
18227255
34.

Mass spectrometry-based proteomics of fungal wall glycoproteins.

Yin QY, de Groot PW, de Koster CG, Klis FM.

Trends Microbiol. 2008 Jan;16(1):20-6. Epub 2007 Dec 21. Review.

PMID:
18096391
35.

Mass spectrometric quantitation of covalently bound cell wall proteins in Saccharomyces cerevisiae.

Yin QY, de Groot PW, de Jong L, Klis FM, De Koster CG.

FEMS Yeast Res. 2007 Sep;7(6):887-96. Epub 2007 Jul 6.

37.

Extraction of cell surface-associated proteins from living yeast cells.

Klis FM, de Jong M, Brul S, de Groot PW.

Yeast. 2007 Apr;24(4):253-8.

38.

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.

Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wösten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H.

Nat Biotechnol. 2007 Feb;25(2):221-31. Epub 2007 Jan 28.

PMID:
17259976
39.

Cellular processes and pathways that protect Saccharomyces cerevisiae cells against the plasma membrane-perturbing compound chitosan.

Zakrzewska A, Boorsma A, Delneri D, Brul S, Oliver SG, Klis FM.

Eukaryot Cell. 2007 Apr;6(4):600-8. Epub 2007 Jan 26.

40.

Mass spectrometric identification of covalently bound cell wall proteins from the fission yeast Schizosaccharomyces pombe.

de Groot PW, Yin QY, Weig M, Sosinska GJ, Klis FM, de Koster CG.

Yeast. 2007 Apr;24(4):267-78.

41.

Identification of cell wall-associated proteins from Phytophthora ramorum.

Meijer HJ, van de Vondervoort PJ, Yin QY, de Koster CG, Klis FM, Govers F, de Groot PW.

Mol Plant Microbe Interact. 2006 Dec;19(12):1348-58.

42.

The CRH family coding for cell wall glycosylphosphatidylinositol proteins with a predicted transglycosidase domain affects cell wall organization and virulence of Candida albicans.

Pardini G, De Groot PW, Coste AT, Karababa M, Klis FM, de Koster CG, Sanglard D.

J Biol Chem. 2006 Dec 29;281(52):40399-411. Epub 2006 Oct 30.

43.

Mechanism of action of the endo-(1-->3)-alpha-glucanase MutAp from the mycoparasitic fungus Trichoderma harzianum.

Grün CH, Dekker N, Nieuwland AA, Klis FM, Kamerling JP, Vliegenthart JF, Hochstenbach F.

FEBS Lett. 2006 Jul 10;580(16):3780-6. Epub 2006 Jun 9.

44.
45.

Role of cell cycle-regulated expression in the localized incorporation of cell wall proteins in yeast.

Smits GJ, Schenkman LR, Brul S, Pringle JR, Klis FM.

Mol Biol Cell. 2006 Jul;17(7):3267-80. Epub 2006 May 3.

46.

Flocculation, adhesion and biofilm formation in yeasts.

Verstrepen KJ, Klis FM.

Mol Microbiol. 2006 Apr;60(1):5-15. Review.

47.

Cell wall construction in Saccharomyces cerevisiae.

Klis FM, Boorsma A, De Groot PW.

Yeast. 2006 Feb;23(3):185-202. Review.

48.

The Aspergillus niger MADS-box transcription factor RlmA is required for cell wall reinforcement in response to cell wall stress.

Damveld RA, Arentshorst M, Franken A, vanKuyk PA, Klis FM, van den Hondel CA, Ram AF.

Mol Microbiol. 2005 Oct;58(1):305-19.

49.

Characterisation of CwpA, a putative glycosylphosphatidylinositol-anchored cell wall mannoprotein in the filamentous fungus Aspergillus niger.

Damveld RA, Arentshorst M, VanKuyk PA, Klis FM, van den Hondel CA, Ram AF.

Fungal Genet Biol. 2005 Oct;42(10):873-85.

PMID:
16154783
50.

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