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Items: 1 to 50 of 441

1.

Found art: the yeast vacuole.

Hartley S, Klionsky DJ.

Autophagy. 2019 Jul 15:1-7. doi: 10.1080/15548627.2019.1638208. [Epub ahead of print]

PMID:
31305202
2.

The "found-art vacuole"-people learn in different ways.

Klionsky DJ.

Autophagy. 2019 Jun 25:1-2. doi: 10.1080/15548627.2019.1630225. [Epub ahead of print]

PMID:
31238790
3.

Autophagy, Inflammation, and Metabolism (AIM) Center in its second year.

Deretic V, Prossnitz E, Burge M, Campen MJ, Cannon J, Liu KJ, Liu M, Hall P, Sklar LA, Allers L, Mariscal L, Garcia SA, Weaver J, Baehrecke EH, Behrends C, Cecconi F, Codogno P, Chen GC, Elazar Z, Eskelinen EL, Fourie B, Gozuacik D, Hong W, Jo EK, Johansen T, Juhász G, Kimchi A, Ktistakis N, Kroemer G, Mizushima N, Münz C, Reggiori F, Rubinsztein D, Ryan K, Schroder K, Shen HM, Simonsen A, Tooze SA, Vaccaro M, Yoshimori T, Yu L, Zhang H, Klionsky DJ.

Autophagy. 2019 Jul 15:1-5. doi: 10.1080/15548627.2019.1634444. [Epub ahead of print]

PMID:
31234750
4.

2020 Is not that far away, which means it is time for the new guidelines.

Klionsky DJ.

Autophagy. 2019 Jul;15(7):1129. doi: 10.1080/15548627.2019.1624415. Epub 2019 May 31. No abstract available.

PMID:
31149865
5.

Bidirectional roles of Dhh1 in regulating autophagy.

Liu X, Jin M, Yao Z, Bernard A, Klionsky DJ.

Autophagy. 2019 Jun 11:1-2. doi: 10.1080/15548627.2019.1621632. [Epub ahead of print]

PMID:
31116636
6.

UIM-UDS: a new interface between ATG8 and its interactors.

Lei Y, Klionsky DJ.

Cell Res. 2019 Jul;29(7):507-508. doi: 10.1038/s41422-019-0179-y. No abstract available.

PMID:
31110250
7.

Dhh1 promotes autophagy-related protein translation during nitrogen starvation.

Liu X, Yao Z, Jin M, Namkoong S, Yin Z, Lee JH, Klionsky DJ.

PLoS Biol. 2019 Apr 11;17(4):e3000219. doi: 10.1371/journal.pbio.3000219. eCollection 2019 Apr.

8.

Watch What You (Self-) Eat: Autophagic Mechanisms that Modulate Metabolism.

Lahiri V, Hawkins WD, Klionsky DJ.

Cell Metab. 2019 Apr 2;29(4):803-826. doi: 10.1016/j.cmet.2019.03.003. Review.

PMID:
30943392
9.

The Pat1-Lsm complex prevents 3' to 5' degradation of a specific subset of ATG mRNAs during nitrogen starvation-induced autophagy.

Gatica D, Hu G, Zhang N, Williamson PR, Klionsky DJ.

Autophagy. 2019 Apr;15(4):750-751. doi: 10.1080/15548627.2019.1587262. Epub 2019 Mar 18.

PMID:
30885034
10.

Ferroptosis is a type of autophagy-dependent cell death.

Zhou B, Liu J, Kang R, Klionsky DJ, Kroemer G, Tang D.

Semin Cancer Biol. 2019 Mar 14. pii: S1044-579X(19)30006-9. doi: 10.1016/j.semcancer.2019.03.002. [Epub ahead of print] Review.

PMID:
30880243
11.

Towards understanding mRNA-binding protein specificity: lessons from post-transcriptional regulation of ATG mRNA during nitrogen starvation-induced autophagy.

Gatica D, Klionsky DJ.

Curr Genet. 2019 Aug;65(4):847-849. doi: 10.1007/s00294-019-00943-5. Epub 2019 Feb 19. Review.

PMID:
30783742
12.

Podocytes and autophagy: a potential therapeutic target in lupus nephritis.

Zhou XJ, Klionsky DJ, Zhang H.

Autophagy. 2019 May;15(5):908-912. doi: 10.1080/15548627.2019.1580512. Epub 2019 Feb 17.

PMID:
30755075
13.

Follicular lymphoma-associated mutations in vacuolar ATPase ATP6V1B2 activate autophagic flux and mTOR.

Wang F, Gatica D, Ying ZX, Peterson LF, Kim P, Bernard D, Saiya-Cork K, Wang S, Kaminski MS, Chang AE, Phillips T, Klionsky DJ, Malek SN.

J Clin Invest. 2019 Mar 4;130:1626-1640. doi: 10.1172/JCI98288. eCollection 2019 Mar 4.

14.

Spatially distinct pools of TORC1 balance protein homeostasis.

Lahiri V, Klionsky DJ.

Autophagy. 2019 Apr;15(4):561-564. doi: 10.1080/15548627.2019.1575162. Epub 2019 Feb 6.

PMID:
30696339
15.

PP2C phosphatases promote autophagy by dephosphorylation of the Atg1 complex.

Memisoglu G, Eapen VV, Yang Y, Klionsky DJ, Haber JE.

Proc Natl Acad Sci U S A. 2019 Jan 29;116(5):1613-1620. doi: 10.1073/pnas.1817078116. Epub 2019 Jan 17.

PMID:
30655342
16.

Regulation of JMY's actin nucleation activity by TTC5/STRAP and LC3 during autophagy.

Liu X, Klionsky DJ.

Autophagy. 2019 Mar;15(3):373-374. doi: 10.1080/15548627.2018.1564417. Epub 2019 Jan 6.

PMID:
30593260
17.

On the edge of degradation: Autophagy regulation by RNA decay.

Delorme-Axford E, Klionsky DJ.

Wiley Interdiscip Rev RNA. 2019 May;10(3):e1522. doi: 10.1002/wrna.1522. Epub 2018 Dec 17. Review.

PMID:
30560575
18.

The Pat1-Lsm Complex Stabilizes ATG mRNA during Nitrogen Starvation-Induced Autophagy.

Gatica D, Hu G, Liu X, Zhang N, Williamson PR, Klionsky DJ.

Mol Cell. 2019 Jan 17;73(2):314-324.e4. doi: 10.1016/j.molcel.2018.11.002. Epub 2018 Dec 6.

PMID:
30527663
19.

Vacuolar hydrolysis and efflux: current knowledge and unanswered questions.

Parzych KR, Klionsky DJ.

Autophagy. 2019 Feb;15(2):212-227. doi: 10.1080/15548627.2018.1545821. Epub 2018 Nov 22.

PMID:
30422029
20.

Inflammatory-dependent Sting activation induces antiviral autophagy to limit zika virus in the Drosophila brain.

Delorme-Axford E, Klionsky DJ.

Autophagy. 2019 Jan;15(1):1-3. doi: 10.1080/15548627.2018.1539585. Epub 2018 Nov 1.

PMID:
30354937
21.

MAP1A/BLC3? Now I am really confused.

Klionsky DJ.

Autophagy. 2018;14(12):2033-2034. doi: 10.1080/15548627.2018.1528810. Epub 2018 Oct 9.

PMID:
30296899
22.

Mitochondrial quality control mediated by PINK1 and PRKN: links to iron metabolism and tumor immunity.

Kang R, Xie Y, Zeh HJ, Klionsky DJ, Tang D.

Autophagy. 2019 Jan;15(1):172-173. doi: 10.1080/15548627.2018.1526611. Epub 2018 Oct 8.

PMID:
30252570
23.

Structural basis for extremely strong binding affinity of giant ankyrins to LC3/GABARAP and its application in the inhibition of autophagy.

Popelka H, Klionsky DJ.

Autophagy. 2018;14(11):1847-1849. doi: 10.1080/15548627.2018.1522884.

PMID:
30231788
24.

Necrotic, apoptotic and autophagic cell fates triggered by nanoparticles.

Mohammadinejad R, Moosavi MA, Tavakol S, Vardar DÖ, Hosseini A, Rahmati M, Dini L, Hussain S, Mandegary A, Klionsky DJ.

Autophagy. 2019 Jan;15(1):4-33. doi: 10.1080/15548627.2018.1509171. Epub 2018 Sep 13.

PMID:
30160607
25.

BECN1 is a new driver of ferroptosis.

Kang R, Zhu S, Zeh HJ, Klionsky DJ, Tang D.

Autophagy. 2018;14(12):2173-2175. doi: 10.1080/15548627.2018.1513758. Epub 2018 Sep 6.

PMID:
30145930
26.

Why do we need to regulate autophagy (and how can we do it)? A cartoon depiction.

Klionsky DJ.

Autophagy. 2018;14(10):1661-1664. doi: 10.1080/15548627.2018.1511218.

PMID:
30129812
27.

PINK1 and PARK2 Suppress Pancreatic Tumorigenesis through Control of Mitochondrial Iron-Mediated Immunometabolism.

Li C, Zhang Y, Cheng X, Yuan H, Zhu S, Liu J, Wen Q, Xie Y, Liu J, Kroemer G, Klionsky DJ, Lotze MT, Zeh HJ, Kang R, Tang D.

Dev Cell. 2018 Aug 20;46(4):441-455.e8. doi: 10.1016/j.devcel.2018.07.012. Epub 2018 Aug 9.

PMID:
30100261
28.

Finding a ribophagy receptor.

Jin M, Klionsky DJ.

Autophagy. 2018;14(9):1479-1480. doi: 10.1080/15548627.2018.1483672. Epub 2018 Aug 1.

PMID:
30067425
29.

Plasmodium protein UIS3 protects the parasite from autophagy clearance.

Yao Z, Klionsky DJ.

Autophagy. 2018;14(8):1291-1292. doi: 10.1080/15548627.2018.1483671. Epub 2018 Aug 1.

PMID:
30067422
30.

Functions of the COPII gene paralogs SEC23A and SEC23B are interchangeable in vivo.

Khoriaty R, Hesketh GG, Bernard A, Weyand AC, Mellacheruvu D, Zhu G, Hoenerhoff MJ, McGee B, Everett L, Adams EJ, Zhang B, Saunders TL, Nesvizhskii AI, Klionsky DJ, Shavit JA, Gingras AC, Ginsburg D.

Proc Natl Acad Sci U S A. 2018 Aug 14;115(33):E7748-E7757. doi: 10.1073/pnas.1805784115. Epub 2018 Jul 31.

31.

AMPK-Mediated BECN1 Phosphorylation Promotes Ferroptosis by Directly Blocking System Xc- Activity.

Song X, Zhu S, Chen P, Hou W, Wen Q, Liu J, Xie Y, Liu J, Klionsky DJ, Kroemer G, Lotze MT, Zeh HJ, Kang R, Tang D.

Curr Biol. 2018 Aug 6;28(15):2388-2399.e5. doi: 10.1016/j.cub.2018.05.094. Epub 2018 Jul 26.

PMID:
30057310
32.

The phagophore in four dimensions-a study in wood.

Sewell JC, Klionsky DJ.

Autophagy. 2018;14(10):1674-1676. doi: 10.1080/15548627.2018.1493315. Epub 2018 Aug 1.

PMID:
30009664
33.

Inhibiting autophagy reduces retinal degeneration caused by protein misfolding.

Yao J, Qiu Y, Frontera E, Jia L, Khan NW, Klionsky DJ, Ferguson TA, Thompson DA, Zacks DN.

Autophagy. 2018;14(7):1226-1238. doi: 10.1080/15548627.2018.1463121. Epub 2018 Jul 13.

34.

Autophagy, Inflammation, and Metabolism (AIM) Center of Biomedical Research Excellence: supporting the next generation of autophagy researchers and fostering international collaborations.

Deretic V, Prossnitz E, Burge M, Campen MJ, Cannon J, Liu KJ, Sklar LA, Allers L, Garcia SA, Baehrecke EH, Behrends C, Cecconi F, Codogno P, Chen GC, Elazar Z, Eskelinen EL, Fourie B, Gozuacik D, Hong W, Hotamisligi G, Jäättelä M, Jo EK, Johansen T, Juhász G, Kimchi A, Ktistakis N, Kroemer G, MIzushima N, Münz C, Reggiori F, Rubinsztein D, Ryan K, Schroder K, Simonsen A, Tooze S, Vaccaro MI, Yoshimori T, Yu L, Zhang H, Klionsky DJ.

Autophagy. 2018;14(6):925-929. doi: 10.1080/15548627.2018.1465784.

PMID:
29938597
35.

CCPG1 is a noncanonical autophagy cargo receptor essential for reticulophagy and pancreatic ER proteostasis.

Lahiri V, Klionsky DJ.

Autophagy. 2018;14(7):1107-1109. doi: 10.1080/15548627.2018.1467199.

PMID:
29911925
36.

An atypical BAR domain protein in autophagy.

Popelka H, Klionsky DJ, Ragusa MJ.

Autophagy. 2018;14(7):1155-1156. doi: 10.1080/15548627.2018.1445915. Epub 2018 May 25.

37.

Why do we need autophagy? A cartoon depiction.

Klionsky DJ.

Autophagy. 2018;14(5):739-742. doi: 10.1080/15548627.2018.1446628. Epub 2018 May 21.

38.

Genetic aberrations in macroautophagy genes leading to diseases.

van Beek N, Klionsky DJ, Reggiori F.

Biochim Biophys Acta Mol Cell Res. 2018 May;1865(5):803-816. doi: 10.1016/j.bbamcr.2018.03.002. Epub 2018 Mar 8. Review.

39.

A newly characterized vacuolar serine carboxypeptidase, Atg42/Ybr139w, is required for normal vacuole function and the terminal steps of autophagy in the yeast Saccharomyces cerevisiae.

Parzych KR, Ariosa A, Mari M, Klionsky DJ.

Mol Biol Cell. 2018 May 1;29(9):1089-1099. doi: 10.1091/mbc.E17-08-0516. Epub 2018 Mar 22.

40.

Cargo recognition and degradation by selective autophagy.

Gatica D, Lahiri V, Klionsky DJ.

Nat Cell Biol. 2018 Mar;20(3):233-242. doi: 10.1038/s41556-018-0037-z. Epub 2018 Feb 23. Review.

41.

The exoribonuclease Xrn1 is a post-transcriptional negative regulator of autophagy.

Delorme-Axford E, Abernathy E, Lennemann NJ, Bernard A, Ariosa A, Coyne CB, Kirkegaard K, Klionsky DJ.

Autophagy. 2018;14(5):898-912. doi: 10.1080/15548627.2018.1441648. Epub 2018 Mar 21.

42.

Transcriptional and post-transcriptional regulation of autophagy in the yeast Saccharomyces cerevisiae.

Delorme-Axford E, Klionsky DJ.

J Biol Chem. 2018 Apr 13;293(15):5396-5403. doi: 10.1074/jbc.R117.804641. Epub 2018 Jan 25. Review.

43.

Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018.

Galluzzi L, Vitale I, Aaronson SA, Abrams JM, Adam D, Agostinis P, Alnemri ES, Altucci L, Amelio I, Andrews DW, Annicchiarico-Petruzzelli M, Antonov AV, Arama E, Baehrecke EH, Barlev NA, Bazan NG, Bernassola F, Bertrand MJM, Bianchi K, Blagosklonny MV, Blomgren K, Borner C, Boya P, Brenner C, Campanella M, Candi E, Carmona-Gutierrez D, Cecconi F, Chan FK, Chandel NS, Cheng EH, Chipuk JE, Cidlowski JA, Ciechanover A, Cohen GM, Conrad M, Cubillos-Ruiz JR, Czabotar PE, D'Angiolella V, Dawson TM, Dawson VL, De Laurenzi V, De Maria R, Debatin KM, DeBerardinis RJ, Deshmukh M, Di Daniele N, Di Virgilio F, Dixit VM, Dixon SJ, Duckett CS, Dynlacht BD, El-Deiry WS, Elrod JW, Fimia GM, Fulda S, García-Sáez AJ, Garg AD, Garrido C, Gavathiotis E, Golstein P, Gottlieb E, Green DR, Greene LA, Gronemeyer H, Gross A, Hajnoczky G, Hardwick JM, Harris IS, Hengartner MO, Hetz C, Ichijo H, Jäättelä M, Joseph B, Jost PJ, Juin PP, Kaiser WJ, Karin M, Kaufmann T, Kepp O, Kimchi A, Kitsis RN, Klionsky DJ, Knight RA, Kumar S, Lee SW, Lemasters JJ, Levine B, Linkermann A, Lipton SA, Lockshin RA, López-Otín C, Lowe SW, Luedde T, Lugli E, MacFarlane M, Madeo F, Malewicz M, Malorni W, Manic G, Marine JC, Martin SJ, Martinou JC, Medema JP, Mehlen P, Meier P, Melino S, Miao EA, Molkentin JD, Moll UM, Muñoz-Pinedo C, Nagata S, Nuñez G, Oberst A, Oren M, Overholtzer M, Pagano M, Panaretakis T, Pasparakis M, Penninger JM, Pereira DM, Pervaiz S, Peter ME, Piacentini M, Pinton P, Prehn JHM, Puthalakath H, Rabinovich GA, Rehm M, Rizzuto R, Rodrigues CMP, Rubinsztein DC, Rudel T, Ryan KM, Sayan E, Scorrano L, Shao F, Shi Y, Silke J, Simon HU, Sistigu A, Stockwell BR, Strasser A, Szabadkai G, Tait SWG, Tang D, Tavernarakis N, Thorburn A, Tsujimoto Y, Turk B, Vanden Berghe T, Vandenabeele P, Vander Heiden MG, Villunger A, Virgin HW, Vousden KH, Vucic D, Wagner EF, Walczak H, Wallach D, Wang Y, Wells JA, Wood W, Yuan J, Zakeri Z, Zhivotovsky B, Zitvogel L, Melino G, Kroemer G.

Cell Death Differ. 2018 Mar;25(3):486-541. doi: 10.1038/s41418-017-0012-4. Epub 2018 Jan 23. Review.

44.

An Autophagy-Independent Role for ATG41 in Sulfur Metabolism During Zinc Deficiency.

Bucci MD, Weisenhorn E, Haws S, Yao Z, Zimmerman G, Gannon M, Taggart J, Lee T, Klionsky DJ, Russell J, Coon J, Eide DJ.

Genetics. 2018 Mar;208(3):1115-1130. doi: 10.1534/genetics.117.300679. Epub 2018 Jan 10.

45.

Autophagy and inflammation: A special review issue.

Deretic V, Klionsky DJ.

Autophagy. 2018;14(2):179-180. doi: 10.1080/15548627.2017.1412229. Epub 2018 Jan 29.

46.

ER-mitochondria contacts are required for pexophagy in Saccharomyces cerevisiae.

Liu X, Wen X, Klionsky DJ.

Contact (Thousand Oaks). 2018 Jan-Dec;2. doi: 10.1177/2515256418821584. Epub 2019 Jan 8.

47.

Secretory autophagy holds the key to lysozyme secretion during bacterial infection of the intestine.

Delorme-Axford E, Klionsky DJ.

Autophagy. 2018;14(3):365-367. doi: 10.1080/15548627.2017.1401425. Epub 2018 Jan 29. Review.

48.

Structure and function of yeast Atg20, a sorting nexin that facilitates autophagy induction.

Popelka H, Damasio A, Hinshaw JE, Klionsky DJ, Ragusa MJ.

Proc Natl Acad Sci U S A. 2017 Nov 21;114(47):E10112-E10121. doi: 10.1073/pnas.1708367114. Epub 2017 Nov 7.

49.

Regulation of autophagic lysosome reformation by kinesin 1, clathrin and phosphatidylinositol-4,5-bisphosphate.

Liu X, Klionsky DJ.

Autophagy. 2018;14(1):1-2. doi: 10.1080/15548627.2017.1386821. Epub 2017 Dec 21. No abstract available.

50.

Ion channels in the regulation of autophagy.

Kondratskyi A, Kondratska K, Skryma R, Klionsky DJ, Prevarskaya N.

Autophagy. 2018;14(1):3-21. doi: 10.1080/15548627.2017.1384887. Epub 2017 Nov 23. Review.

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