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Items: 14

1.

Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies.

Hestand MS, Klingenhoff A, Scherf M, Ariyurek Y, Ramos Y, van Workum W, Suzuki M, Werner T, van Ommen GJ, den Dunnen JT, Harbers M, 't Hoen PA.

Nucleic Acids Res. 2010 Sep;38(16):e165. doi: 10.1093/nar/gkq602. Epub 2010 Jul 7.

2.

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.

Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo ML.

Science. 2008 Aug 15;321(5891):956-60. doi: 10.1126/science.1160342. Epub 2008 Jul 3.

3.

Stat3 is involved in control of MASP2 gene expression.

Unterberger C, Hanson S, Klingenhoff A, Oesterle D, Frankenberger M, Endo Y, Matsushita M, Fujita T, Schwaeble W, Weiss EH, Ziegler-Heitbrock L, Stover C.

Biochem Biophys Res Commun. 2007 Dec 28;364(4):1022-5. Epub 2007 Oct 29.

PMID:
17971300
4.

Comparative promoter analysis allows de novo identification of specialized cell junction-associated proteins.

Cohen CD, Klingenhoff A, Boucherot A, Nitsche A, Henger A, Brunner B, Schmid H, Merkle M, Saleem MA, Koller KP, Werner T, Gröne HJ, Nelson PJ, Kretzler M.

Proc Natl Acad Sci U S A. 2006 Apr 11;103(15):5682-7. Epub 2006 Mar 31.

5.

MMP-20 is predominately a tooth-specific enzyme with a deep catalytic pocket that hydrolyzes type V collagen.

Turk BE, Lee DH, Yamakoshi Y, Klingenhoff A, Reichenberger E, Wright JT, Simmer JP, Komisarof JA, Cantley LC, Bartlett JD.

Biochemistry. 2006 Mar 28;45(12):3863-74.

6.

MatInspector and beyond: promoter analysis based on transcription factor binding sites.

Cartharius K, Frech K, Grote K, Klocke B, Haltmeier M, Klingenhoff A, Frisch M, Bayerlein M, Werner T.

Bioinformatics. 2005 Jul 1;21(13):2933-42. Epub 2005 Apr 28.

PMID:
15860560
7.

Linking disease-associated genes to regulatory networks via promoter organization.

Döhr S, Klingenhoff A, Maier H, Hrabé de Angelis M, Werner T, Schneider R.

Nucleic Acids Res. 2005 Feb 8;33(3):864-72. Print 2005.

8.

In silico prediction of scaffold/matrix attachment regions in large genomic sequences.

Frisch M, Frech K, Klingenhoff A, Cartharius K, Liebich I, Werner T.

Genome Res. 2002 Feb;12(2):349-54.

9.
10.

First pass annotation of promoters on human chromosome 22.

Scherf M, Klingenhoff A, Frech K, Quandt K, Schneider R, Grote K, Frisch M, Gailus-Durner V, Seidel A, Brack-Werner R, Werner T.

Genome Res. 2001 Mar;11(3):333-40.

11.
12.

Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity.

Klingenhoff A, Frech K, Quandt K, Werner T.

Bioinformatics. 1999 Mar;15(3):180-6.

PMID:
10222404
13.

Functional analysis of the fission yeast Prp4 protein kinase involved in pre-mRNA splicing and isolation of a putative mammalian homologue.

Gross T, Lützelberger M, Weigmann H, Klingenhoff A, Shenoy S, Käufer NF.

Nucleic Acids Res. 1997 Mar 1;25(5):1028-35.

14.

A sensitive method for the detection of murine C-type retroviruses.

Heinemeyer T, Klingenhoff A, Hansen W, Schumacher L, Hauser H, Wirth M.

J Virol Methods. 1997 Jan;63(1-2):155-65.

PMID:
9015286

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