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Items: 1 to 50 of 64

1.

Dense Geographic and Genomic Sampling Reveals Paraphyly and a Cryptic Lineage in a Classic Sibling Species Complex.

Linck E, Epperly K, Van Els P, Spellman GM, Bryson RW, McCormack JE, Canales-Del-Castillo R, Klicka J.

Syst Biol. 2019 Apr 23. pii: syz027. doi: 10.1093/sysbio/syz027. [Epub ahead of print]

PMID:
31135028
2.

Cryptic diversity in the Mexican highlands: Thousands of UCE loci help illuminate phylogenetic relationships, species limits and divergence times of montane rattlesnakes (Viperidae: Crotalus).

Blair C, Bryson RW Jr, Linkem CW, Lazcano D, Klicka J, McCormack JE.

Mol Ecol Resour. 2019 Mar;19(2):349-365. doi: 10.1111/1755-0998.12970. Epub 2018 Dec 21.

PMID:
30565862
3.

Deep divergence of Red-crowned Ant Tanager (Habia rubica: Cardinalidae), a multilocus phylogenetic analysis with emphasis in Mesoamerica.

Ramírez-Barrera SM, Hernández-Baños BE, Jaramillo-Correa JP, Klicka J.

PeerJ. 2018 Sep 12;6:e5496. doi: 10.7717/peerj.5496. eCollection 2018.

4.

Phylogenomic insights into the diversification of salamanders in the Isthmura bellii group across the Mexican highlands.

Bryson RW Jr, Zarza E, Grummer JA, Parra-Olea G, Flores-Villela O, Klicka J, McCormack JE.

Mol Phylogenet Evol. 2018 Aug;125:78-84. doi: 10.1016/j.ympev.2018.03.024. Epub 2018 Mar 16.

PMID:
29555294
5.

Species delimitation and biogeography of the gnatcatchers and gnatwrens (Aves: Polioptilidae).

Smith BT, Bryson RW Jr, Mauck WM 3rd, Chaves J, Robbins MB, Aleixo A, Klicka J.

Mol Phylogenet Evol. 2018 Sep;126:45-57. doi: 10.1016/j.ympev.2018.03.012. Epub 2018 Mar 15.

PMID:
29551521
6.

A Migratory Divide in the Painted Bunting (Passerina ciris).

Battey CJ, Linck EB, Epperly KL, French C, Slager DL, Sykes PW Jr, Klicka J.

Am Nat. 2018 Feb;191(2):259-268. doi: 10.1086/695439. Epub 2017 Nov 29.

PMID:
29351011
7.

Cryptic speciation and gene flow in a migratory songbird Species Complex: Insights from the Red-Eyed Vireo (Vireo olivaceus).

Battey CJ, Klicka J.

Mol Phylogenet Evol. 2017 Aug;113:67-75. doi: 10.1016/j.ympev.2017.05.006. Epub 2017 May 12.

PMID:
28502764
8.

The biogeographic and evolutionary history of an endemic clade of Middle American sparrows: Melozone and Aimophila (Aves: Passerellidae).

Sandoval L, Epperly KL, Klicka J, Mennill DJ.

Mol Phylogenet Evol. 2017 May;110:50-59. doi: 10.1016/j.ympev.2017.03.008. Epub 2017 Mar 7.

PMID:
28286101
9.

How Many Kinds of Birds Are There and Why Does It Matter?

Barrowclough GF, Cracraft J, Klicka J, Zink RM.

PLoS One. 2016 Nov 23;11(11):e0166307. doi: 10.1371/journal.pone.0166307. eCollection 2016.

10.

Hidden histories of gene flow in highland birds revealed with genomic markers.

Zarza E, Faircloth BC, Tsai WL, Bryson RW Jr, Klicka J, McCormack JE.

Mol Ecol. 2016 Oct;25(20):5144-5157. doi: 10.1111/mec.13813. Epub 2016 Sep 12.

PMID:
27543758
11.

Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana.

Manthey JD, Klicka J, Spellman GM.

Heredity (Edinb). 2015 Aug;115(2):165-72. doi: 10.1038/hdy.2015.27. Epub 2015 Apr 8.

12.

Polyphyly of Hylophilus and a new genus for the Tawny-crowned Greenlet (Aves: Passeriformes: Vireonidae).

Slager DL, Klicka J.

Zootaxa. 2014 Nov 13;3884(2):194-6. doi: 10.11646/zootaxa.3884.2.8.

PMID:
25543778
13.

A multilocus phylogeny of a major New World avian radiation: the Vireonidae.

Slager DL, Battey CJ, Bryson RW Jr, Voelker G, Klicka J.

Mol Phylogenet Evol. 2014 Nov;80:95-104. doi: 10.1016/j.ympev.2014.07.021. Epub 2014 Aug 8.

PMID:
25109651
14.

Extensive gene flow characterizes the phylogeography of a North American migrant bird: Black-headed Grosbeak (Pheucticus melanocephalus).

van Els P, Spellman GM, Smith BT, Klicka J.

Mol Phylogenet Evol. 2014 Sep;78:148-59. doi: 10.1016/j.ympev.2014.04.028. Epub 2014 May 16.

PMID:
24841539
15.

A comprehensive multilocus assessment of sparrow (Aves: Passerellidae) relationships.

Klicka J, Keith Barker F, Burns KJ, Lanyon SM, Lovette IJ, Chaves JA, Bryson RW Jr.

Mol Phylogenet Evol. 2014 Aug;77:177-82. doi: 10.1016/j.ympev.2014.04.025. Epub 2014 Apr 30.

PMID:
24792084
16.

Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds.

Burns KJ, Shultz AJ, Title PO, Mason NA, Barker FK, Klicka J, Lanyon SM, Lovette IJ.

Mol Phylogenet Evol. 2014 Jun;75:41-77. doi: 10.1016/j.ympev.2014.02.006. Epub 2014 Feb 26.

PMID:
24583021
17.

A comprehensive species-level molecular phylogeny of the New World blackbirds (Icteridae).

Powell AF, Barker FK, Lanyon SM, Burns KJ, Klicka J, Lovette IJ.

Mol Phylogenet Evol. 2014 Feb;71:94-112. doi: 10.1016/j.ympev.2013.11.009. Epub 2013 Nov 27.

PMID:
24291659
18.

Multilocus phylogeny and biogeography of the New World Pheucticus grosbeaks (Aves: Cardinalidae).

Pulgarín-R PC, Smith BT, Bryson RW Jr, Spellman GM, Klicka J.

Mol Phylogenet Evol. 2013 Dec;69(3):1222-7. doi: 10.1016/j.ympev.2013.05.022. Epub 2013 Jun 11.

PMID:
23769955
19.

Gene trees, species trees and Earth history combine to shed light on the evolution of migration in a model avian system.

Voelker G, Bowie RC, Klicka J.

Mol Ecol. 2013 Jun;22(12):3333-44. doi: 10.1111/mec.12305. Epub 2013 May 25.

PMID:
23710782
20.

Examining the role of effective population size on mitochondrial and multilocus divergence time discordance in a songbird.

Smith BT, Klicka J.

PLoS One. 2013;8(2):e55161. doi: 10.1371/journal.pone.0055161. Epub 2013 Feb 15.

21.

Going to extremes: contrasting rates of diversification in a recent radiation of new world passerine birds.

Barker FK, Burns KJ, Klicka J, Lanyon SM, Lovette IJ.

Syst Biol. 2013 Mar;62(2):298-320. doi: 10.1093/sysbio/sys094. Epub 2012 Dec 9.

PMID:
23229025
22.

Speciational history of North American Haemorhous finches (Aves: Fringillidae) inferred from multilocus data.

Smith BT, Bryson RW Jr, Chua V, Africa L, Klicka J.

Mol Phylogenet Evol. 2013 Mar;66(3):1055-9. doi: 10.1016/j.ympev.2012.11.016. Epub 2012 Dec 3.

PMID:
23219607
23.

Identifying biases at different spatial and temporal scales of diversification: a case study in the Neotropical parrotlet genus Forpus.

Smith BT, Ribas CC, Whitney BM, Hernández-Baños BE, Klicka J.

Mol Ecol. 2013 Jan;22(2):483-94. doi: 10.1111/mec.12118. Epub 2012 Nov 28.

PMID:
23190339
24.

Is gene flow promoting the reversal of pleistocene divergence in the Mountain Chickadee (Poecile gambeli)?

Manthey JD, Klicka J, Spellman GM.

PLoS One. 2012;7(11):e49218. doi: 10.1371/journal.pone.0049218. Epub 2012 Nov 12.

25.

An asymmetry in niche conservatism contributes to the latitudinal species diversity gradient in New World vertebrates.

Smith BT, Bryson RW Jr, Houston DD, Klicka J.

Ecol Lett. 2012 Nov;15(11):1318-1325. doi: 10.1111/j.1461-0248.2012.01855.x. Epub 2012 Aug 22.

PMID:
22909289
26.

Evaluating the role of contracting and expanding rainforest in initiating cycles of speciation across the Isthmus of Panama.

Smith BT, Amei A, Klicka J.

Proc Biol Sci. 2012 Sep 7;279(1742):3520-6. doi: 10.1098/rspb.2012.0706. Epub 2012 Jun 6.

27.

High latitudes and high genetic diversity: phylogeography of a widespread boreal bird, the gray jay (Perisoreus canadensis).

van Els P, Cicero C, Klicka J.

Mol Phylogenet Evol. 2012 May;63(2):456-65. doi: 10.1016/j.ympev.2012.01.019. Epub 2012 Feb 1.

PMID:
22321688
28.

Speciation in the White-breasted Nuthatch (Sitta carolinensis): a multilocus perspective.

Walstrom VW, Klicka J, Spellman GM.

Mol Ecol. 2012 Feb;21(4):907-20. doi: 10.1111/j.1365-294X.2011.05384.x. Epub 2011 Dec 23.

PMID:
22192449
29.

Isolation-driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae).

Manthey JD, Klicka J, Spellman GM.

Mol Ecol. 2011 Oct;20(20):4371-84. doi: 10.1111/j.1365-294X.2011.05270.x. Epub 2011 Sep 21.

30.

The role of historical and contemporary processes on phylogeographic structure and genetic diversity in the Northern Cardinal, Cardinalis cardinalis.

Smith BT, Escalante P, Hernández Baños BE, Navarro-Sigüenza AG, Rohwer S, Klicka J.

BMC Evol Biol. 2011 May 20;11:136. doi: 10.1186/1471-2148-11-136.

31.

Cryptic diversity in a widespread North American songbird: phylogeography of the Brown Creeper (Certhia americana).

Manthey JD, Klicka J, Spellman GM.

Mol Phylogenet Evol. 2011 Mar;58(3):502-12. doi: 10.1016/j.ympev.2010.12.003. Epub 2010 Dec 17.

PMID:
21168520
32.

Molecular phylogenetic analysis of an endangered Mexican sparrow: Spizella wortheni.

Canales-del-Castillo R, Klicka J, Favela S, González-Rojas JI.

Mol Phylogenet Evol. 2010 Dec;57(3):1319-22. doi: 10.1016/j.ympev.2010.08.009. Epub 2010 Aug 17.

PMID:
20723611
33.

A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves).

Lovette IJ, Pérez-Emán JL, Sullivan JP, Banks RC, Fiorentino I, Córdoba-Córdoba S, Echeverry-Galvis M, Barker FK, Burns KJ, Klicka J, Lanyon SM, Bermingham E.

Mol Phylogenet Evol. 2010 Nov;57(2):753-70. doi: 10.1016/j.ympev.2010.07.018. Epub 2010 Aug 7.

PMID:
20696258
34.

Neotropical birds show a humped distribution of within-population genetic diversity along a latitudinal transect.

Miller MJ, Bermingham E, Klicka J, Escalante P, Winker K.

Ecol Lett. 2010 May;13(5):576-86. doi: 10.1111/j.1461-0248.2010.01454.x.

PMID:
20529101
35.

Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna.

Barber BR, Klicka J.

Proc Biol Sci. 2010 Sep 7;277(1694):2675-81. doi: 10.1098/rspb.2010.0343. Epub 2010 Apr 21.

36.

Evolutionary history of a prominent North American warbler clade: the Oporornis-Geothlypis complex.

Escalante P, Márquez-Valdelamar L, de la Torre P, Laclette JP, Klicka J.

Mol Phylogenet Evol. 2009 Dec;53(3):668-78. doi: 10.1016/j.ympev.2009.07.014. Epub 2009 Jul 17.

PMID:
19616636
37.

Systematics of Zoothera thrushes, and a synthesis of true thrush molecular systematic relationships.

Voelker G, Klicka J.

Mol Phylogenet Evol. 2008 Oct;49(1):377-81. doi: 10.1016/j.ympev.2008.06.014. Epub 2008 Jun 28. No abstract available.

PMID:
18639642
38.

Phylogeography of a morphologically diverse Neotropical montane species, the Common Bush-Tanager (Chlorospingus ophthalmicus).

Weir JT, Bermingham E, Miller MJ, Klicka J, González MA.

Mol Phylogenet Evol. 2008 May;47(2):650-64. doi: 10.1016/j.ympev.2008.02.004. Epub 2008 Feb 15.

PMID:
18378470
39.

The Great American Interchange in birds: a phylogenetic perspective with the genus Trogon.

DaCosta JM, Klicka J.

Mol Ecol. 2008 Mar;17(5):1328-43. doi: 10.1111/j.1365-294X.2007.03647.x.

PMID:
18302692
40.

Out of Amazonia again and again: episodic crossing of the Andes promotes diversification in a lowland forest flycatcher.

Miller MJ, Bermingham E, Klicka J, Escalante P, do Amaral FS, Weir JT, Winker K.

Proc Biol Sci. 2008 May 22;275(1639):1133-42. doi: 10.1098/rspb.2008.0015.

41.

Defining a monophyletic Cardinalini: a molecular perspective.

Klicka J, Burns K, Spellman GM.

Mol Phylogenet Evol. 2007 Dec;45(3):1014-32. Epub 2007 Jul 19.

PMID:
17920298
42.
44.
46.

The tempo of avian diversification: a comment on Johnson and Cicero.

Zink RM, Klicka J.

Evolution. 2006 Feb;60(2):411-2; discussion 413-4.

PMID:
16610332
47.

A molecular phylogenetic analysis of the "true thrushes" (Aves: Turdinae).

Klicka J, Voelker G, Spellman GM.

Mol Phylogenet Evol. 2005 Mar;34(3):486-500. Epub 2005 Jan 11. Erratum in: Mol Phylogenet Evol. 2005 Jun;35(3):725.

PMID:
15683924
48.

The tempo of avian diversification during the Quaternary.

Zink RM, Klicka J, Barber BR.

Philos Trans R Soc Lond B Biol Sci. 2004 Feb 29;359(1442):215-9; discussion 219-20.

49.

Longspurs and snow buntings: phylogeny and biogeography of a high-latitude clade (Calcarius).

Klicka J, Zink RM, Winker K.

Mol Phylogenet Evol. 2003 Feb;26(2):165-75.

PMID:
12565028
50.

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