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Items: 1 to 50 of 923

1.

Comparative genomic analysis of eight novel haloalkaliphilic bacteriophages from Lake Elmenteita, Kenya.

Akhwale JK, Rohde M, Rohde C, Bunk B, Spröer C, Klenk HP, Boga HI, Wittmann J.

PLoS One. 2019 Feb 14;14(2):e0212102. doi: 10.1371/journal.pone.0212102. eCollection 2019.

2.
3.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

PMID:
30679363
4.

Double Lock of a Human Neutralizing and Protective Monoclonal Antibody Targeting the Yellow Fever Virus Envelope.

Lu X, Xiao H, Li S, Pang X, Song J, Liu S, Cheng H, Li Y, Wang X, Huang C, Guo T, Ter Meulen J, Daffis S, Yan J, Dai L, Rao Z, Klenk HD, Qi J, Shi Y, Gao GF.

Cell Rep. 2019 Jan 8;26(2):438-446.e5. doi: 10.1016/j.celrep.2018.12.065.

5.

Jiangella anatolica sp. nov. isolated from coastal lake soil.

Ay H, Nouioui I, Carro L, Klenk HP, Cetin D, Igual JM, Sahin N, Isik K.

Antonie Van Leeuwenhoek. 2019 Jan 2. doi: 10.1007/s10482-018-01222-y. [Epub ahead of print]

PMID:
30603802
6.

Complete Genome Sequence of Streptacidiphilus sp. Strain 15-057A, Obtained from Bronchial Lavage Fluid.

Arthur RA, Gulvik CA, Humrighouse BW, Lasker BA, Batra D, Rowe LA, Igual JM, Nouioui I, Klenk HP, McQuiston JR.

Microbiol Resour Announc. 2018 Nov 15;7(19). pii: e01127-18. doi: 10.1128/MRA.01127-18. eCollection 2018 Nov.

7.

A study of three bacteria isolated from marine sediment and description of Micromonospora globispora sp. nov.

Carro L, Veyisoglu A, Cetin D, Igual JM, Klenk HP, Trujillo ME, Sahin N.

Syst Appl Microbiol. 2018 Nov 16. pii: S0723-2020(18)30397-7. doi: 10.1016/j.syapm.2018.11.003. [Epub ahead of print]

PMID:
30528275
8.

Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus Amycolatopsis, Using a Phylogenomic Approach.

Sangal V, Goodfellow M, Blom J, Tan GYA, Klenk HP, Sutcliffe IC.

Front Microbiol. 2018 Sep 27;9:2281. doi: 10.3389/fmicb.2018.02281. eCollection 2018.

9.

Description of a novel species of fast growing mycobacterium: Mycobacterium kyogaense sp. nov., a scotochromogenic strain received as Mycobacterium vaccae.

Nouioui I, Brunet LR, Simpson D, Klenk HP, Goodfellow M.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3726-3734. doi: 10.1099/ijsem.0.003039. Epub 2018 Oct 9.

PMID:
30300123
10.

An update on the taxonomy of the genus Frankia Brunchorst, 1886, 174AL.

Gtari M, Nouioui I, Sarkar I, Ghodhbane-Gtari F, Tisa LS, Sen A, Klenk HP.

Antonie Van Leeuwenhoek. 2019 Jan;112(1):5-21. doi: 10.1007/s10482-018-1165-y. Epub 2018 Sep 19.

PMID:
30232679
11.

Genome-Based Taxonomic Classification of the Phylum Actinobacteria.

Nouioui I, Carro L, García-López M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Göker M.

Front Microbiol. 2018 Aug 22;9:2007. doi: 10.3389/fmicb.2018.02007. eCollection 2018.

12.

Frankia canadensis sp. nov., isolated from root nodules of Alnus incana subspecies rugosa.

Normand P, Nouioui I, Pujic P, Fournier P, Dubost A, Schwob G, Klenk HP, Nguyen A, Abrouk D, Herrera-Belaroussi A, Pothier JF, Pflüger V, Fernandez MP.

Int J Syst Evol Microbiol. 2018 Sep;68(9):3001-3011. doi: 10.1099/ijsem.0.002939. Epub 2018 Jul 30.

PMID:
30059001
13.

Frankia torreyi sp. nov., the first actinobacterium of the genus Frankia Brunchorst 1886, 174AL isolated in axenic culture.

Nouioui I, Ghodhbane-Gtari F, Jando M, Tisa LS, Klenk HP, Gtari M.

Antonie Van Leeuwenhoek. 2019 Jan;112(1):57-65. doi: 10.1007/s10482-018-1131-8. Epub 2018 Jul 20.

PMID:
30030730
14.

Receptor-binding properties of influenza viruses isolated from gulls.

Gambaryan AS, Matrosovich TY, Boravleva EY, Lomakina NF, Yamnikova SS, Tuzikov AB, Pazynina GV, Bovin NV, Fouchier RAM, Klenk HD, Matrosovich MN.

Virology. 2018 Sep;522:37-45. doi: 10.1016/j.virol.2018.07.004. Epub 2018 Jul 12.

PMID:
30014856
15.

Frankia irregularis sp. nov., an actinobacterium unable to nodulate its original host, Casuarina equisetifolia, but effectively nodulates members of the actinorhizal Rhamnales.

Nouioui I, Ghodhbane-Gtari F, Rhode M, Sangal V, Klenk HP, Gtari M.

Int J Syst Evol Microbiol. 2018 Sep;68(9):2883-2914. doi: 10.1099/ijsem.0.002914. Epub 2018 Jul 16.

PMID:
30010524
16.

Kushneria phyllosphaerae sp. nov. and Kushneria endophytica sp. nov., plant growth promoting endophytes isolated from the halophyte plant Arthrocnemum macrostachyum.

Navarro-Torre S, Carro L, Rodríguez-Llorente ID, Pajuelo E, Caviedes MÁ, Igual JM, Redondo-Gómez S, Camacho M, Klenk HP, Montero-Calasanz MDC.

Int J Syst Evol Microbiol. 2018 Sep;68(9):2800-2806. doi: 10.1099/ijsem.0.002897. Epub 2018 Jul 16.

PMID:
30010522
17.

Defining the Species Micromonospora saelicesensis and Micromonospora noduli Under the Framework of Genomics.

Riesco R, Carro L, Román-Ponce B, Prieto C, Blom J, Klenk HP, Normand P, Trujillo ME.

Front Microbiol. 2018 Jun 25;9:1360. doi: 10.3389/fmicb.2018.01360. eCollection 2018.

18.

Nonomuraea insulae sp. nov., isolated from forest soil.

Saricaoglu S, Nouioui I, Ay H, Saygin H, Bektas KI, Guven K, Cetin D, Klenk HP, Isik K, Sahin N.

Antonie Van Leeuwenhoek. 2018 May 16. doi: 10.1007/s10482-018-1097-6. [Epub ahead of print]

PMID:
29767331
19.

Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments.

Spring S, Bunk B, Spröer C, Rohde M, Klenk HP.

Environ Microbiol. 2018 Jul;20(7):2438-2455. doi: 10.1111/1462-2920.14253. Epub 2018 Jul 26.

PMID:
29697183
20.

Immunization of Domestic Ducks with Live Nonpathogenic H5N3 Influenza Virus Prevents Shedding and Transmission of Highly Pathogenic H5N1 Virus to Chickens.

Gambaryan A, Gordeychuk I, Boravleva E, Lomakina N, Kropotkina E, Lunitsin A, Klenk HD, Matrosovich M.

Viruses. 2018 Mar 31;10(4). pii: E164. doi: 10.3390/v10040164.

21.

Corrigendum: Genome-Based Taxonomic Classification of Bacteroidetes.

Hahnke RL, Meier-Kolthoff JP, García-López M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Göker M.

Front Microbiol. 2018 Feb 21;9:304. doi: 10.3389/fmicb.2018.00304. eCollection 2018.

22.

Hunting for cultivable Micromonospora strains in soils of the Atacama Desert.

Carro L, Razmilic V, Nouioui I, Richardson L, Pan C, Golinska P, Asenjo JA, Bull AT, Klenk HP, Goodfellow M.

Antonie Van Leeuwenhoek. 2018 Aug;111(8):1375-1387. doi: 10.1007/s10482-018-1049-1. Epub 2018 Feb 26.

PMID:
29480426
23.

Frankia saprophytica sp. nov., an atypical, non-infective (Nod-) and non-nitrogen fixing (Fix-) actinobacterium isolated from Coriaria nepalensis root nodules.

Nouioui I, Ghodhbane-Gtari F, Klenk HP, Gtari M.

Int J Syst Evol Microbiol. 2018 Apr;68(4):1090-1095. doi: 10.1099/ijsem.0.002633. Epub 2018 Feb 13.

PMID:
29458682
24.

Blastococcus xanthinilyticus sp. nov., isolated from monument.

Hezbri K, Nouioui I, Rohde M, Spröer C, Schumann P, Gtari M, Klenk HP, Montero-Calasanz MDC, Ghodhbane-Gtari F.

Int J Syst Evol Microbiol. 2018 Apr;68(4):1177-1183. doi: 10.1099/ijsem.0.002646. Epub 2018 Feb 19.

PMID:
29458502
25.

Formal description of Mycobacterium neglectum sp. nov. and Mycobacterium palauense sp. nov., rapidly growing actinobacteria.

Nouioui I, Carro L, Sangal V, Jando M, Igual JM, Goodfellow M, Klenk HP.

Antonie Van Leeuwenhoek. 2018 Jul;111(7):1209-1223. doi: 10.1007/s10482-018-1029-5. Epub 2018 Feb 5.

PMID:
29404824
26.

Acetylcholine Receptor Antibody Titers and Clinical Course after Influenza Vaccination in Patients with Myasthenia Gravis: A Double-Blind Randomized Controlled Trial (ProPATIent-Trial).

Tackenberg B, Schneider M, Blaes F, Eienbröker C, Schade-Brittinger C, Wellek A, Deschauer M, Eickmann M, Klenk HD, Müller HH, Sommer N.

EBioMedicine. 2018 Feb;28:143-150. doi: 10.1016/j.ebiom.2018.01.007. Epub 2018 Jan 10.

27.

Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.

Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, Göker M, Goodfellow M.

Sci Rep. 2018 Jan 11;8(1):525. doi: 10.1038/s41598-017-17392-0.

28.

Genome sequence and comparative analysis of Jiangella alba YIM 61503T isolated from a medicinal plant Maytenus austroyunnanensis.

Jiao JY, Salam N, Liu L, Rao MPN, Zhang XT, Fang BZ, Han MX, Zhang ZT, Chen J, Zhao J, Zhou Y, Alkhalifah DHM, Liu Q, Xiao M, Klenk HP, Li WJ.

Antonie Van Leeuwenhoek. 2018 May;111(5):667-678. doi: 10.1007/s10482-017-1010-8. Epub 2017 Dec 29.

PMID:
29288361
29.

Complete genome sequence analysis of Archaeoglobus fulgidus strain 7324 (DSM 8774), a hyperthermophilic archaeal sulfate reducer from a North Sea oil field.

Birkeland NK, Schönheit P, Poghosyan L, Fiebig A, Klenk HP.

Stand Genomic Sci. 2017 Dec 16;12:79. doi: 10.1186/s40793-017-0296-5. eCollection 2017.

30.

Oligomycins A and E, major bioactive secondary metabolites produced by Streptomyces sp. strain HG29 isolated from a Saharan soil.

Khebizi N, Boudjella H, Bijani C, Bouras N, Klenk HP, Pont F, Mathieu F, Sabaou N.

J Mycol Med. 2018 Mar;28(1):150-160. doi: 10.1016/j.mycmed.2017.10.007. Epub 2017 Nov 20.

PMID:
29158025
31.

Micromonospora phytophila sp. nov. and Micromonospora luteiviridis sp. nov., isolated as natural inhabitants of plant nodules.

Carro L, Veyisoglu A, Riesco R, Spröer C, Klenk HP, Sahin N, Trujillo ME.

Int J Syst Evol Microbiol. 2018 Jan;68(1):248-253. doi: 10.1099/ijsem.0.002490. Epub 2017 Nov 17.

PMID:
29148367
32.

Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica.

Choi DH, Jang GI, Lapidus A, Copeland A, Reddy TBK, Mukherjee S, Huntemann M, Varghese N, Ivanova N, Pillay M, Tindall BJ, Göker M, Woyke T, Klenk HP, Kyrpides NC, Cho BC.

Stand Genomic Sci. 2017 Oct 30;12:65. doi: 10.1186/s40793-017-0275-x. eCollection 2017.

33.

Streptomyces odonnellii sp. nov., a proteolytic streptomycete isolated from soil under cerrado (savanna) vegetation cover.

Pereira PHF, Macrae A, Reinert F, de Souza RF, Coelho RRR, Pötter G, Klenk HP, Labeda DP.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5211-5215. doi: 10.1099/ijsem.0.002446. Epub 2017 Oct 31.

PMID:
29087276
34.

Streptomyces sediminis sp. nov. isolated from crater lake sediment.

Ay H, Nouioui I, Del Carmen Montero-Calasanz M, Klenk HP, Isik K, Cetin D, Sahin N.

Antonie Van Leeuwenhoek. 2018 Apr;111(4):493-500. doi: 10.1007/s10482-017-0970-z. Epub 2017 Oct 27.

PMID:
29079877
35.

Two novel species of rapidly growing mycobacteria: Mycobacterium lehmannii sp. nov. and Mycobacterium neumannii sp. nov.

Nouioui I, Sangal V, Carro L, Teramoto K, Jando M, Montero-Calasanz MDC, Igual JM, Sutcliffe I, Goodfellow M, Klenk HP.

Int J Syst Evol Microbiol. 2017 Dec;67(12):4948-4955. doi: 10.1099/ijsem.0.002350. Epub 2017 Oct 23.

PMID:
29058645
36.

Kocuria salina sp. nov., an actinobacterium isolated from the rhizosphere of the halophyte Arthrocnemum macrostachyum and emended description of Kocuria turfanensis.

Camacho M, Redondo-Gomez S, Rodríguez-Llorente I, Rohde M, Spröer C, Schumann P, Klenk HP, Montero-Calasanz MDC.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5006-5012. doi: 10.1099/ijsem.0.002401. Epub 2017 Oct 16.

PMID:
29034846
37.

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC.

Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2.

38.

Frankia asymbiotica sp. nov., a non-infective actinobacterium isolated from Morella californica root nodule.

Nouioui I, Gueddou A, Ghodhbane-Gtari F, Rhode M, Gtari M, Klenk HP.

Int J Syst Evol Microbiol. 2017 Dec;67(12):4897-4901. doi: 10.1099/ijsem.0.002153. Epub 2017 Sep 18.

PMID:
28918775
39.

Mycobacterium eburneum sp. nov., a non-chromogenic, fast-growing strain isolated from sputum.

Nouioui I, Carro L, Teramoto K, Igual JM, Jando M, Del Carmen Montero-Calasanz M, Sutcliffe I, Sangal V, Goodfellow M, Klenk HP.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3174-3181. doi: 10.1099/ijsem.0.002033. Epub 2017 Sep 4.

PMID:
28869002
40.

Reclassification of Mzabimyces algeriensis Saker et al. 2015 as Halopolyspora algeriensis comb. nov.

Lai H, Jiang Y, Saker R, Chen X, Bouras N, Klenk HP, Wei X, Jiang Y, Sabaou N.

Int J Syst Evol Microbiol. 2017 Aug;67(8):2787-2790. doi: 10.1099/ijsem.0.002022. Epub 2017 Aug 18.

PMID:
28820085
41.

Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation.

Nouioui I, Rückert C, Willemse J, van Wezel GP, Klenk HP, Busche T, Kalinowski J, Bredholt H, Zotchev SB.

Antonie Van Leeuwenhoek. 2017 Dec;110(12):1705-1717. doi: 10.1007/s10482-017-0920-9. Epub 2017 Aug 2.

42.

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC.

Nat Biotechnol. 2017 Jul;35(7):676-683. doi: 10.1038/nbt.3886. Epub 2017 Jun 12.

43.

Correction for Barka et al., Taxonomy, Physiology, and Natural Products of Actinobacteria.

Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Meier-Kolthoff JP, Klenk HP, Clément C, Ouhdouch Y, van Wezel GP.

Microbiol Mol Biol Rev. 2016 Nov 9;80(4):iii. doi: 10.1128/MMBR.00044-16. Print 2016 Dec. No abstract available.

44.

Marburg- and Ebolaviruses: A Look Back and Lessons for the Future.

Klenk HD, Slenczka W.

Methods Mol Biol. 2017;1628:3-14. doi: 10.1007/978-1-4939-7116-9_1.

PMID:
28573607
45.

High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk.

Laviad-Shitrit S, Göker M, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Markowitz V, Ivanova N, Woyke T, Klenk HP, Kyrpides NC, Halpern M.

Stand Genomic Sci. 2017 May 8;12:31. doi: 10.1186/s40793-017-0242-6. eCollection 2017.

46.

pH Optimum of Hemagglutinin-Mediated Membrane Fusion Determines Sensitivity of Influenza A Viruses to the Interferon-Induced Antiviral State and IFITMs.

Gerlach T, Hensen L, Matrosovich T, Bergmann J, Winkler M, Peteranderl C, Klenk HD, Weber F, Herold S, Pöhlmann S, Matrosovich M.

J Virol. 2017 May 12;91(11). pii: e00246-17. doi: 10.1128/JVI.00246-17. Print 2017 Jun 1.

47.

Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota.

Kublanov IV, Sigalova OM, Gavrilov SN, Lebedinsky AV, Rinke C, Kovaleva O, Chernyh NA, Ivanova N, Daum C, Reddy TB, Klenk HP, Spring S, Göker M, Reva ON, Miroshnichenko ML, Kyrpides NC, Woyke T, Gelfand MS, Bonch-Osmolovskaya EA.

Front Microbiol. 2017 Feb 20;8:195. doi: 10.3389/fmicb.2017.00195. eCollection 2017.

48.

Actinomadura alkaliterrae sp. nov., isolated from an alkaline soil.

Ay H, Nouioui I, Del Carmen Montero-Calasanz M, Carro L, Klenk HP, Goodfellow M, Igual JM, Çetin D, Şahin N, Işık K.

Antonie Van Leeuwenhoek. 2017 Jun;110(6):787-794. doi: 10.1007/s10482-017-0850-6. Epub 2017 Mar 1.

PMID:
28251351
49.

H7N9 Influenza A Virus Exhibits Importin-α7-Mediated Replication in the Mammalian Respiratory Tract.

Bertram S, Thiele S, Dreier C, Resa-Infante P, Preuß A, van Riel D, Mok CKP, Schwalm F, Peiris JSM, Klenk HD, Gabriel G.

Am J Pathol. 2017 Apr;187(4):831-840. doi: 10.1016/j.ajpath.2016.12.017. Epub 2017 Feb 9.

PMID:
28189564
50.

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.

Jiao JY, Carro L, Liu L, Gao XY, Zhang XT, Hozzein WN, Lapidus A, Huntemann M, Reddy TBK, Varghese N, Hadjithomas M, Ivanova NN, Göker M, Pillay M, Eisen JA, Woyke T, Klenk HP, Kyrpides NC, Li WJ.

Stand Genomic Sci. 2017 Feb 3;12:21. doi: 10.1186/s40793-017-0226-6. eCollection 2017.

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