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Items: 1 to 50 of 107

1.

Proteomics, Glycomics, and Glycoproteomics of Matrisome Molecules.

Raghunathan R, Sethi MK, Klein JA, Zaia J.

Mol Cell Proteomics. 2019 Nov;18(11):2138-2148. doi: 10.1074/mcp.R119.001543. Epub 2019 Aug 30. Review.

PMID:
31471497
2.

High-resolution mapping reveals that microniches in the gastric glands control Helicobacter pylori colonization of the stomach.

Fung C, Tan S, Nakajima M, Skoog EC, Camarillo-Guerrero LF, Klein JA, Lawley TD, Solnick JV, Fukami T, Amieva MR.

PLoS Biol. 2019 May 2;17(5):e3000231. doi: 10.1371/journal.pbio.3000231. eCollection 2019 May.

3.

Subclinical Cognitive Impairment and Listing for Kidney Transplantation.

Gupta A, Montgomery RN, Bedros V, Lesko J, Mahnken JD, Chakraborty S, Drew D, Klein JA, Thomas TS, Ilahe A, Budhiraja P, Brooks WM, Schmitt TM, Sarnak MJ, Burns JM, Cibrik DM.

Clin J Am Soc Nephrol. 2019 Apr 5;14(4):567-575. doi: 10.2215/CJN.11010918. Epub 2019 Mar 19.

PMID:
30890576
4.

Pyteomics 4.0: Five Years of Development of a Python Proteomics Framework.

Levitsky LI, Klein JA, Ivanov MV, Gorshkov MV.

J Proteome Res. 2019 Feb 1;18(2):709-714. doi: 10.1021/acs.jproteome.8b00717. Epub 2019 Jan 8.

PMID:
30576148
5.

Warming and land use change concurrently erode ecosystem services in Tibet.

Hopping KA, Knapp AK, Dorji T, Klein JA.

Glob Chang Biol. 2018 Nov;24(11):5534-5548. doi: 10.1111/gcb.14417. Epub 2018 Sep 14.

PMID:
30086187
6.

Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway.

Raghunathan R, Polinski NK, Klein JA, Hogan JD, Shao C, Khatri K, Leon D, McComb ME, Manfredsson FP, Sortwell CE, Zaia J.

Mol Cell Proteomics. 2018 Sep;17(9):1778-1787. doi: 10.1074/mcp.RA118.000680. Epub 2018 Jun 18.

7.

Deep Sequencing of Complex Proteoglycans: A Novel Strategy for High Coverage and Site-specific Identification of Glycosaminoglycan-linked Peptides.

Klein JA, Meng L, Zaia J.

Mol Cell Proteomics. 2018 Aug;17(8):1578-1590. doi: 10.1074/mcp.RA118.000766. Epub 2018 May 17.

8.

Comparison of Collisional and Electron-Based Dissociation Modes for Middle-Down Analysis of Multiply Glycosylated Peptides.

Khatri K, Pu Y, Klein JA, Wei J, Costello CE, Lin C, Zaia J.

J Am Soc Mass Spectrom. 2018 Jun;29(6):1075-1085. doi: 10.1007/s13361-018-1909-y. Epub 2018 Apr 16.

9.

Software for Peak Finding and Elemental Composition Assignment for Glycosaminoglycan Tandem Mass Spectra.

Hogan JD, Klein JA, Wu J, Chopra P, Boons GJ, Carvalho L, Lin C, Zaia J.

Mol Cell Proteomics. 2018 Jul;17(7):1448-1456. doi: 10.1074/mcp.RA118.000590. Epub 2018 Apr 3.

10.

Tumescent contravenom: murine model for prehospital treatment of Naja naja neurotoxic snake envenomation.

Makdisi JR, Kim DP, Klein PA, Klein JA.

Int J Dermatol. 2018 May;57(5):605-610. doi: 10.1111/ijd.13877. Epub 2018 Feb 20.

PMID:
29460967
11.

Controlled Activity of the Salmonella Invasion-Associated Injectisome Reveals Its Intracellular Role in the Cytosolic Population.

Klein JA, Grenz JR, Slauch JM, Knodler LA.

MBio. 2017 Dec 5;8(6). pii: e01931-17. doi: 10.1128/mBio.01931-17.

12.

Discrepancies between Perceived and Measured Cognition in Kidney Transplant Recipients: Implications for Clinical Management.

Gupta A, Thomas TS, Klein JA, Montgomery RN, Mahnken JD, Johnson DK, Drew DA, Sarnak MJ, Burns JM.

Nephron. 2018;138(1):22-28. doi: 10.1159/000481182. Epub 2017 Oct 20.

13.

Cryptosporidium parvum vaccine candidates are incompletely modified with O-linked-N-acetylgalactosamine or contain N-terminal N-myristate and S-palmitate.

Haserick JR, Klein JA, Costello CE, Samuelson J.

PLoS One. 2017 Aug 8;12(8):e0182395. doi: 10.1371/journal.pone.0182395. eCollection 2017.

14.

Prevention of Surgical Site Infections and Biofilms: Pharmacokinetics of Subcutaneous Cefazolin and Metronidazole in a Tumescent Lidocaine Solution.

Klein JA, Langman LJ.

Plast Reconstr Surg Glob Open. 2017 May 30;5(5):e1351. doi: 10.1097/GOX.0000000000001351. eCollection 2017 May.

15.

Microfluidic Capillary Electrophoresis-Mass Spectrometry for Analysis of Monosaccharides, Oligosaccharides, and Glycopeptides.

Khatri K, Klein JA, Haserick JR, Leon DR, Costello CE, McComb ME, Zaia J.

Anal Chem. 2017 Jun 20;89(12):6645-6655. doi: 10.1021/acs.analchem.7b00875. Epub 2017 Jun 6.

16.

Antidepressant Prescribing by Pediatricians: A Mixed-Methods Analysis.

Tulisiak AK, Klein JA, Harris E, Luft MJ, Schroeder HK, Mossman SA, Varney ST, Keeshin BR, Cotton S, Strawn JR.

Curr Probl Pediatr Adolesc Health Care. 2017 Jan;47(1):15-24. doi: 10.1016/j.cppeds.2016.11.009. Epub 2017 Jan 2.

17.

Functional relatedness in the Inv/Mxi-Spa type III secretion system family.

Klein JA, Dave BM, Raphenya AR, McArthur AG, Knodler LA.

Mol Microbiol. 2017 Mar;103(6):973-991. doi: 10.1111/mmi.13602. Epub 2017 Jan 30.

18.

Severe Obesity Decreasing in Children in Cincinnati, Ohio.

Kharofa RY, Klein JA, Khoury P, Siegel RM.

Clin Pediatr (Phila). 2017 Jul;56(8):752-758. doi: 10.1177/0009922816674519. Epub 2016 Nov 22.

PMID:
27872358
19.

Measurement of Salmonella enterica Internalization and Vacuole Lysis in Epithelial Cells.

Klein JA, Powers TR, Knodler LA.

Methods Mol Biol. 2017;1519:285-296.

PMID:
27815887
20.

Use of an informed search space maximizes confidence of site-specific assignment of glycoprotein glycosylation.

Khatri K, Klein JA, Zaia J.

Anal Bioanal Chem. 2017 Jan;409(2):607-618. doi: 10.1007/s00216-016-9970-5. Epub 2016 Oct 12.

21.

Routine ultrasonography surveillance of native kidneys for renal cell carcinoma in kidney transplant candidates.

Klein JA, Gonzalez SA, Fischbach BV, Yango AF, Rajagopal A, Rice KM, Saim M, Barri YM, Melton LB, Klintmalm GB, Chandrakantan A.

Clin Transplant. 2016 Aug;30(8):946-53. doi: 10.1111/ctr.12769. Epub 2016 Jul 25.

PMID:
27218882
22.

The type III secretion system apparatus determines the intracellular niche of bacterial pathogens.

Du J, Reeves AZ, Klein JA, Twedt DJ, Knodler LA, Lesser CF.

Proc Natl Acad Sci U S A. 2016 Apr 26;113(17):4794-9. doi: 10.1073/pnas.1520699113. Epub 2016 Apr 12.

23.

Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions.

Khatri K, Klein JA, White MR, Grant OC, Leymarie N, Woods RJ, Hartshorn KL, Zaia J.

Mol Cell Proteomics. 2016 Jun;15(6):1895-912. doi: 10.1074/mcp.M116.058016. Epub 2016 Mar 16.

24.

Estimated Maximal Safe Dosages of Tumescent Lidocaine.

Klein JA, Jeske DR.

Anesth Analg. 2016 May;122(5):1350-9. doi: 10.1213/ANE.0000000000001119.

25.

Plant species' origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands.

Seabloom EW, Borer ET, Buckley YM, Cleland EE, Davies KF, Firn J, Harpole WS, Hautier Y, Lind EM, MacDougall AS, Orrock JL, Prober SM, Adler PB, Anderson TM, Bakker JD, Biederman LA, Blumenthal DM, Brown CS, Brudvig LA, Cadotte M, Chu C, Cottingham KL, Crawley MJ, Damschen EI, Dantonio CM, DeCrappeo NM, Du G, Fay PA, Frater P, Gruner DS, Hagenah N, Hector A, Hillebrand H, Hofmockel KS, Humphries HC, Jin VL, Kay A, Kirkman KP, Klein JA, Knops JM, La Pierre KJ, Ladwig L, Lambrinos JG, Li Q, Li W, Marushia R, McCulley RL, Melbourne BA, Mitchell CE, Moore JL, Morgan J, Mortensen B, O'Halloran LR, Pyke DA, Risch AC, Sankaran M, Schuetz M, Simonsen A, Smith MD, Stevens CJ, Sullivan L, Wolkovich E, Wragg PD, Wright J, Yang L.

Nat Commun. 2015 Jul 15;6:7710. doi: 10.1038/ncomms8710.

27.

Use of Photodynamic Therapy and Sterile Water to Target Adipose Tissue.

Wanner M, Mihm MC Jr, Farinelli WA, Doukas A, Zurakowski D, Piris A, Avram MM, Klein JA, Anderson RR.

Dermatol Surg. 2015 Jul;41(7):803-11. doi: 10.1097/DSS.0000000000000385.

PMID:
26079592
28.
29.

Introduction. Analysis and synthesis in medieval and early modern Europe.

Klein JA, Ragland ER.

Ambix. 2014 Nov;61(4):319-26. No abstract available.

PMID:
25509632
30.

Antibiotic failure in a renal transplant patient with Rhodococcus equi infection: an indication for surgical lobectomy.

Ursales A, Klein JA, Beal SG, Koch M, Clement-Kruzel S, Melton LB, Spak CW.

Transpl Infect Dis. 2014 Dec;16(6):1019-23. doi: 10.1111/tid.12314. Epub 2014 Nov 21.

PMID:
25412764
31.

Herbivores and nutrients control grassland plant diversity via light limitation.

Borer ET, Seabloom EW, Gruner DS, Harpole WS, Hillebrand H, Lind EM, Adler PB, Alberti J, Anderson TM, Bakker JD, Biederman L, Blumenthal D, Brown CS, Brudvig LA, Buckley YM, Cadotte M, Chu C, Cleland EE, Crawley MJ, Daleo P, Damschen EI, Davies KF, DeCrappeo NM, Du G, Firn J, Hautier Y, Heckman RW, Hector A, HilleRisLambers J, Iribarne O, Klein JA, Knops JM, La Pierre KJ, Leakey AD, Li W, MacDougall AS, McCulley RL, Melbourne BA, Mitchell CE, Moore JL, Mortensen B, O'Halloran LR, Orrock JL, Pascual J, Prober SM, Pyke DA, Risch AC, Schuetz M, Smith MD, Stevens CJ, Sullivan LL, Williams RJ, Wragg PD, Wright JP, Yang LH.

Nature. 2014 Apr 24;508(7497):517-20. doi: 10.1038/nature13144. Epub 2014 Mar 9.

PMID:
24670649
32.

Eutrophication weakens stabilizing effects of diversity in natural grasslands.

Hautier Y, Seabloom EW, Borer ET, Adler PB, Harpole WS, Hillebrand H, Lind EM, MacDougall AS, Stevens CJ, Bakker JD, Buckley YM, Chu C, Collins SL, Daleo P, Damschen EI, Davies KF, Fay PA, Firn J, Gruner DS, Jin VL, Klein JA, Knops JM, La Pierre KJ, Li W, McCulley RL, Melbourne BA, Moore JL, O'Halloran LR, Prober SM, Risch AC, Sankaran M, Schuetz M, Hector A.

Nature. 2014 Apr 24;508(7497):521-5. doi: 10.1038/nature13014. Epub 2014 Feb 16.

33.

Control of helicase loading in the coupled DNA replication and recombination systems of bacteriophage T4.

Branagan AM, Klein JA, Jordan CS, Morrical SW.

J Biol Chem. 2014 Jan 31;289(5):3040-54. doi: 10.1074/jbc.M113.505842. Epub 2013 Dec 14.

34.

Intracellular accumulation dynamics and fate of zinc ions in alveolar epithelial cells exposed to airborne ZnO nanoparticles at the air-liquid interface.

Mihai C, Chrisler WB, Xie Y, Hu D, Szymanski CJ, Tolic A, Klein JA, Smith JN, Tarasevich BJ, Orr G.

Nanotoxicology. 2015 Feb;9(1):9-22. doi: 10.3109/17435390.2013.859319. Epub 2013 Dec 2.

35.

Climate change and water use partitioning by different plant functional groups in a grassland on the Tibetan Plateau.

Hu J, Hopping KA, Bump JK, Kang S, Klein JA.

PLoS One. 2013 Sep 17;8(9):e75503. doi: 10.1371/journal.pone.0075503. eCollection 2013.

36.

Predicting invasion in grassland ecosystems: is exotic dominance the real embarrassment of richness?

Seabloom EW, Borer ET, Buckley Y, Cleland EE, Davies K, Firn J, Harpole WS, Hautier Y, Lind E, MacDougall A, Orrock JL, Prober SM, Adler P, Alberti J, Anderson TM, Bakker JD, Biederman LA, Blumenthal D, Brown CS, Brudvig LA, Caldeira M, Chu C, Crawley MJ, Daleo P, Damschen EI, D'Antonio CM, DeCrappeo NM, Dickman CR, Du G, Fay PA, Frater P, Gruner DS, Hagenah N, Hector A, Helm A, Hillebrand H, Hofmockel KS, Humphries HC, Iribarne O, Jin VL, Kay A, Kirkman KP, Klein JA, Knops JM, La Pierre KJ, Ladwig LM, Lambrinos JG, Leakey AD, Li Q, Li W, McCulley R, Melbourne B, Mitchell CE, Moore JL, Morgan J, Mortensen B, O'Halloran LR, Pärtel M, Pascual J, Pyke DA, Risch AC, Salguero-Gómez R, Sankaran M, Schuetz M, Simonsen A, Smith M, Stevens C, Sullivan L, Wardle GM, Wolkovich EM, Wragg PD, Wright J, Yang L.

Glob Chang Biol. 2013 Dec;19(12):3677-87. doi: 10.1111/gcb.12370. Epub 2013 Oct 16.

37.

Phenological response of tundra plants to background climate variation tested using the International Tundra Experiment.

Oberbauer SF, Elmendorf SC, Troxler TG, Hollister RD, Rocha AV, Bret-Harte MS, Dawes MA, Fosaa AM, Henry GH, Høye TT, Jarrad FC, Jónsdóttir IS, Klanderud K, Klein JA, Molau U, Rixen C, Schmidt NM, Shaver GR, Slider RT, Totland Ø, Wahren CH, Welker JM.

Philos Trans R Soc Lond B Biol Sci. 2013 Jul 8;368(1624):20120481. doi: 10.1098/rstb.2012.0481. Print 2013 Aug 19.

38.

Plant functional traits mediate reproductive phenology and success in response to experimental warming and snow addition in Tibet.

Dorji T, Totland O, Moe SR, Hopping KA, Pan J, Klein JA.

Glob Chang Biol. 2013 Feb;19(2):459-72. doi: 10.1111/gcb.12059. Epub 2012 Nov 15.

PMID:
23504784
39.

Comparative lipid profiling of the cnidarian Aiptasia pallida and its dinoflagellate symbiont.

Garrett TA, Schmeitzel JL, Klein JA, Hwang JJ, Schwarz JA.

PLoS One. 2013;8(3):e57975. doi: 10.1371/journal.pone.0057975. Epub 2013 Mar 4.

40.

Vaccination with a UV-irradiated genetically attenuated mutant of Staphylococcus aureus provides protection against subsequent systemic infection.

Burnside K, Lembo A, Harrell MI, Klein JA, Lopez-Guisa J, Siegesmund AM, Torgerson TR, Oukka M, Molina DM, Rajagopal L.

J Infect Dis. 2012 Dec 1;206(11):1734-44. doi: 10.1093/infdis/jis579. Epub 2012 Sep 10.

41.

Global assessment of experimental climate warming on tundra vegetation: heterogeneity over space and time.

Elmendorf SC, Henry GH, Hollister RD, Björk RG, Bjorkman AD, Callaghan TV, Collier LS, Cooper EJ, Cornelissen JH, Day TA, Fosaa AM, Gould WA, Grétarsdóttir J, Harte J, Hermanutz L, Hik DS, Hofgaard A, Jarrad F, Jónsdóttir IS, Keuper F, Klanderud K, Klein JA, Koh S, Kudo G, Lang SI, Loewen V, May JL, Mercado J, Michelsen A, Molau U, Myers-Smith IH, Oberbauer SF, Pieper S, Post E, Rixen C, Robinson CH, Schmidt NM, Shaver GR, Stenström A, Tolvanen A, Totland O, Troxler T, Wahren CH, Webber PJ, Welker JM, Wookey PA.

Ecol Lett. 2012 Feb;15(2):164-75. doi: 10.1111/j.1461-0248.2011.01716.x. Epub 2011 Dec 5.

PMID:
22136670
42.

Productivity is a poor predictor of plant species richness.

Adler PB, Seabloom EW, Borer ET, Hillebrand H, Hautier Y, Hector A, Harpole WS, O'Halloran LR, Grace JB, Anderson TM, Bakker JD, Biederman LA, Brown CS, Buckley YM, Calabrese LB, Chu CJ, Cleland EE, Collins SL, Cottingham KL, Crawley MJ, Damschen EI, Davies KF, DeCrappeo NM, Fay PA, Firn J, Frater P, Gasarch EI, Gruner DS, Hagenah N, Hille Ris Lambers J, Humphries H, Jin VL, Kay AD, Kirkman KP, Klein JA, Knops JM, La Pierre KJ, Lambrinos JG, Li W, MacDougall AS, McCulley RL, Melbourne BA, Mitchell CE, Moore JL, Morgan JW, Mortensen B, Orrock JL, Prober SM, Pyke DA, Risch AC, Schuetz M, Smith MD, Stevens CJ, Sullivan LL, Wang G, Wragg PD, Wright JP, Yang LH.

Science. 2011 Sep 23;333(6050):1750-3. doi: 10.1126/science.1204498. Erratum in: Science. 2011 Nov 18;334(6058):905.

43.

Abundance of introduced species at home predicts abundance away in herbaceous communities.

Firn J, Moore JL, MacDougall AS, Borer ET, Seabloom EW, HilleRisLambers J, Harpole WS, Cleland EE, Brown CS, Knops JM, Prober SM, Pyke DA, Farrell KA, Bakker JD, O'Halloran LR, Adler PB, Collins SL, D'Antonio CM, Crawley MJ, Wolkovich EM, La Pierre KJ, Melbourne BA, Hautier Y, Morgan JW, Leakey AD, Kay A, McCulley R, Davies KF, Stevens CJ, Chu CJ, Holl KD, Klein JA, Fay PA, Hagenah N, Kirkman KP, Buckley YM.

Ecol Lett. 2011 Mar;14(3):274-81. doi: 10.1111/j.1461-0248.2010.01584.x. Epub 2011 Feb 1.

PMID:
21281419
44.

Nonsurgical management of cardiac missiles.

Klein JA, Nowak JE, Sutherell JS, Wheeler DS.

Pediatr Emerg Care. 2010 Jan;26(1):36-8. doi: 10.1097/PEC.0b013e3181c39a39.

PMID:
20065828
45.

Cortical activation during finger tracking vs. ankle tracking in healthy subjects.

LaPointe KE, Klein JA, Konkol ML, Kveno SM, Bhatt E, DiFabio RP, Carey JR.

Restor Neurol Neurosci. 2009;27(4):253-264.

PMID:
19813287
46.

Elbow extension test to rule out elbow fracture: multicentre, prospective validation and observational study of diagnostic accuracy in adults and children.

Appelboam A, Reuben AD, Benger JR, Beech F, Dutson J, Haig S, Higginson I, Klein JA, Le Roux S, Saranga SS, Taylor R, Vickery J, Powell RJ, Lloyd G.

BMJ. 2008 Dec 9;337:a2428. doi: 10.1136/bmj.a2428.

47.

Plant species traits are the predominant control on litter decomposition rates within biomes worldwide.

Cornwell WK, Cornelissen JH, Amatangelo K, Dorrepaal E, Eviner VT, Godoy O, Hobbie SE, Hoorens B, Kurokawa H, Pérez-Harguindeguy N, Quested HM, Santiago LS, Wardle DA, Wright IJ, Aerts R, Allison SD, van Bodegom P, Brovkin V, Chatain A, Callaghan TV, Díaz S, Garnier E, Gurvich DE, Kazakou E, Klein JA, Read J, Reich PB, Soudzilovskaia NA, Vaieretti MV, Westoby M.

Ecol Lett. 2008 Oct;11(10):1065-71. doi: 10.1111/j.1461-0248.2008.01219.x. Epub 2008 Jul 8.

PMID:
18627410
48.

Global negative vegetation feedback to climate warming responses of leaf litter decomposition rates in cold biomes.

Cornelissen JH, van Bodegom PM, Aerts R, Callaghan TV, van Logtestijn RS, Alatalo J, Chapin FS, Gerdol R, Gudmundsson J, Gwynn-Jones D, Hartley AE, Hik DS, Hofgaard A, Jónsdóttir IS, Karlsson S, Klein JA, Laundre J, Magnusson B, Michelsen A, Molau U, Onipchenko VG, Quested HM, Sandvik SM, Schmidt IK, Shaver GR, Solheim B, Soudzilovskaia NA, Stenström A, Tolvanen A, Totland Ø, Wada N, Welker JM, Zhao X; M.O.L. Team.

Ecol Lett. 2007 Jul;10(7):619-27.

PMID:
17542940
49.

Experimental warming, not grazing, decreases rangeland quality on the Tibetan Plateau.

Klein JA, Harte J, Zhao XQ.

Ecol Appl. 2007 Mar;17(2):541-57.

PMID:
17489258
50.

A liquid chromatographic-mass spectrometric method to evaluate the distribution kinetics of 1,2-diethylbenzene and its metabolite 1,2-diacetylbenzene in the F344 male rat.

Thrall KD, Gies RA, Cartmell AM, Wu H, Soelberg JJ, Klein JA.

J Toxicol Environ Health A. 2007 Jan;70(1):67-72.

PMID:
17162499

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