Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 266

1.

Corrigendum: Sialyllactose and Galactooligosaccharides Promote Epithelial Barrier Functioning and Distinctly Modulate Microbiota Composition and Short Chain Fatty Acid Production In Vitro.

Perdijk O, van Baarlen P, Fernandez-Gutierrez MM, van den Brink E, Schuren FHJ, Brugman S, Savelkoul HFJ, Kleerebezem M, van Neerven RJJ.

Front Immunol. 2019 Apr 10;10:762. doi: 10.3389/fimmu.2019.00762. eCollection 2019.

2.

Sialyllactose and Galactooligosaccharides Promote Epithelial Barrier Functioning and Distinctly Modulate Microbiota Composition and Short Chain Fatty Acid Production In Vitro.

Perdijk O, van Baarlen P, Fernandez-Gutierrez MM, van den Brink E, Schuren FHJ, Brugman S, Savelkoul HFJ, Kleerebezem M, van Neerven RJJ.

Front Immunol. 2019 Feb 12;10:94. doi: 10.3389/fimmu.2019.00094. eCollection 2019. Erratum in: Front Immunol. 2019 Apr 10;10:762.

3.

Evaluating single-particle tracking by photo-activation localization microscopy (sptPALM) in Lactococcus lactis.

van Beljouw SPB, van der Els S, Martens KJA, Kleerebezem M, Bron PA, Hohlbein J.

Phys Biol. 2019 Mar 8;16(3):035001. doi: 10.1088/1478-3975/ab0162.

PMID:
30673632
4.

Renaissance of traditional DNA transfer strategies for improvement of industrial lactic acid bacteria.

Bron PA, Marcelli B, Mulder J, van der Els S, Morawska LP, Kuipers OP, Kok J, Kleerebezem M.

Curr Opin Biotechnol. 2019 Apr;56:61-68. doi: 10.1016/j.copbio.2018.09.004. Epub 2018 Oct 11. Review.

PMID:
30317145
5.

Understanding mode of action can drive the translational pipeline towards more reliable health benefits for probiotics.

Kleerebezem M, Binda S, Bron PA, Gross G, Hill C, van Hylckama Vlieg JE, Lebeer S, Satokari R, Ouwehand AC.

Curr Opin Biotechnol. 2019 Apr;56:55-60. doi: 10.1016/j.copbio.2018.09.007. Epub 2018 Oct 5. Review.

6.

Perspective: Fundamental Limitations of the Randomized Controlled Trial Method in Nutritional Research: The Example of Probiotics.

Zeilstra D, Younes JA, Brummer RJ, Kleerebezem M.

Adv Nutr. 2018 Sep 1;9(5):561-571. doi: 10.1093/advances/nmy046.

7.

Lactic Acid Bacteria for Delivery of Endogenous or Engineered Therapeutic Molecules.

Bron PA, Kleerebezem M.

Front Microbiol. 2018 Aug 3;9:1821. doi: 10.3389/fmicb.2018.01821. eCollection 2018. Review.

8.

KREAP: an automated Galaxy platform to quantify in vitro re-epithelialization kinetics.

Fernandez-Gutierrez MM, van Zessen DBH, van Baarlen P, Kleerebezem M, Stubbs AP.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy078.

9.

Microbial metabolic gatekeeping in the jejunum.

Kleerebezem M.

Nat Microbiol. 2018 Jun;3(6):650-651. doi: 10.1038/s41564-018-0172-0. No abstract available.

PMID:
29784976
10.

Metatranscriptome analysis of the microbial fermentation of dietary milk proteins in the murine gut.

Hugenholtz F, Davids M, Schwarz J, Müller M, Tomé D, Schaap P, Hooiveld GJEJ, Smidt H, Kleerebezem M.

PLoS One. 2018 Apr 17;13(4):e0194066. doi: 10.1371/journal.pone.0194066. eCollection 2018.

11.

Role of cell surface composition and lysis in static biofilm formation by Lactobacillus plantarum WCFS1.

Fernández Ramírez MD, Nierop Groot MN, Smid EJ, Hols P, Kleerebezem M, Abee T.

Int J Food Microbiol. 2018 Apr 20;271:15-23. doi: 10.1016/j.ijfoodmicro.2018.02.013. Epub 2018 Feb 21.

PMID:
29477805
12.

Versatile Cas9-Driven Subpopulation Selection Toolbox for Lactococcus lactis.

van der Els S, James JK, Kleerebezem M, Bron PA.

Appl Environ Microbiol. 2018 Apr 2;84(8). pii: e02752-17. doi: 10.1128/AEM.02752-17. Print 2018 Apr 15.

13.

Streptococcus salivarius MS-oral-D6 promotes gingival re-epithelialization in vitro through a secreted serine protease.

Fernandez-Gutierrez MM, Roosjen PPJ, Ultee E, Agelink M, Vervoort JJM, Keijser B, Wells JM, Kleerebezem M.

Sci Rep. 2017 Sep 11;7(1):11100. doi: 10.1038/s41598-017-11446-z.

14.

Editorial: Lactic acid bacteria-a continuing journey in science and application.

Kleerebezem M, Kuipers OP, Smid EJ.

FEMS Microbiol Rev. 2017 Aug 1;41(Supp_1):S1-S2. doi: 10.1093/femsre/fux036. No abstract available.

PMID:
28830097
15.

Intestinal colonisation patterns in breastfed and formula-fed infants during the first 12 weeks of life reveal sequential microbiota signatures.

Timmerman HM, Rutten NBMM, Boekhorst J, Saulnier DM, Kortman GAM, Contractor N, Kullen M, Floris E, Harmsen HJM, Vlieger AM, Kleerebezem M, Rijkers GT.

Sci Rep. 2017 Aug 21;7(1):8327. doi: 10.1038/s41598-017-08268-4.

16.

Unleashing Natural Competence in Lactococcus lactis by Induction of the Competence Regulator ComX.

Mulder J, Wels M, Kuipers OP, Kleerebezem M, Bron PA.

Appl Environ Microbiol. 2017 Sep 29;83(20). pii: e01320-17. doi: 10.1128/AEM.01320-17. Print 2017 Oct 15.

17.

Draft Genome Sequence of a Porcine Commensal, Rothia nasimurium, Encoding a Nonribosomal Peptide Synthetase Predicted To Produce the Ionophore Antibiotic Valinomycin.

Gaiser RA, Medema MH, Kleerebezem M, van Baarlen P, Wells JM.

Genome Announc. 2017 Jun 1;5(22). pii: e00453-17. doi: 10.1128/genomeA.00453-17.

18.

High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice.

Xiao L, Sonne SB, Feng Q, Chen N, Xia Z, Li X, Fang Z, Zhang D, Fjære E, Midtbø LK, Derrien M, Hugenholtz F, Tang L, Li J, Zhang J, Liu C, Hao Q, Vogel UB, Mortensen A, Kleerebezem M, Licht TR, Yang H, Wang J, Li Y, Arumugam M, Wang J, Madsen L, Kristiansen K.

Microbiome. 2017 Apr 8;5(1):43. doi: 10.1186/s40168-017-0258-6.

19.

Can probiotics modulate human disease by impacting intestinal barrier function?

Bron PA, Kleerebezem M, Brummer RJ, Cani PD, Mercenier A, MacDonald TT, Garcia-Ródenas CL, Wells JM.

Br J Nutr. 2017 Jan;117(1):93-107. doi: 10.1017/S0007114516004037. Review.

20.

On the ecosystemic network of saliva in healthy young adults.

Zaura E, Brandt BW, Prodan A, Teixeira de Mattos MJ, Imangaliyev S, Kool J, Buijs MJ, Jagers FL, Hennequin-Hoenderdos NL, Slot DE, Nicu EA, Lagerweij MD, Janus MM, Fernandez-Gutierrez MM, Levin E, Krom BP, Brand HS, Veerman EC, Kleerebezem M, Loos BG, van der Weijden GA, Crielaard W, Keijser BJ.

ISME J. 2017 May;11(5):1218-1231. doi: 10.1038/ismej.2016.199. Epub 2017 Jan 10.

21.

Reply to Meisel et al.

Zeeuwen PLJM, Boekhorst J, Ederveen THA, Kleerebezem M, Schalkwijk J, van Hijum SAFT, Timmerman HM.

J Invest Dermatol. 2017 Apr;137(4):961-962. doi: 10.1016/j.jid.2016.11.013. Epub 2016 Nov 22. No abstract available.

22.

Gram-positive anaerobe cocci are underrepresented in the microbiome of filaggrin-deficient human skin.

Zeeuwen PL, Ederveen TH, van der Krieken DA, Niehues H, Boekhorst J, Kezic S, Hanssen DA, Otero ME, van Vlijmen-Willems IM, Rodijk-Olthuis D, Falcone D, van den Bogaard EH, Kamsteeg M, de Koning HD, Zeeuwen-Franssen ME, van Steensel MA, Kleerebezem M, Timmerman HM, van Hijum SA, Schalkwijk J.

J Allergy Clin Immunol. 2017 Apr;139(4):1368-1371. doi: 10.1016/j.jaci.2016.09.017. Epub 2016 Oct 8. No abstract available.

23.

Stress Physiology of Lactic Acid Bacteria.

Papadimitriou K, Alegría Á, Bron PA, de Angelis M, Gobbetti M, Kleerebezem M, Lemos JA, Linares DM, Ross P, Stanton C, Turroni F, van Sinderen D, Varmanen P, Ventura M, Zúñiga M, Tsakalidou E, Kok J.

Microbiol Mol Biol Rev. 2016 Jul 27;80(3):837-90. doi: 10.1128/MMBR.00076-15. Print 2016 Sep. Review.

24.

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats.

Martino ME, Bayjanov JR, Caffrey BE, Wels M, Joncour P, Hughes S, Gillet B, Kleerebezem M, van Hijum SA, Leulier F.

Environ Microbiol. 2016 Dec;18(12):4974-4989. doi: 10.1111/1462-2920.13455. Epub 2016 Aug 4.

PMID:
27422487
25.

The Variable Regions of Lactobacillus rhamnosus Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires.

Ceapa C, Davids M, Ritari J, Lambert J, Wels M, Douillard FP, Smokvina T, de Vos WM, Knol J, Kleerebezem M.

Genome Biol Evol. 2016 Jul 2;8(6):1889-905. doi: 10.1093/gbe/evw123.

26.

Strain-Specific Features of Extracellular Polysaccharides and Their Impact on Lactobacillus plantarum-Host Interactions.

Lee IC, Caggianiello G, van Swam II, Taverne N, Meijerink M, Bron PA, Spano G, Kleerebezem M.

Appl Environ Microbiol. 2016 Jun 13;82(13):3959-3970. doi: 10.1128/AEM.00306-16. Print 2016 Jul 1.

27.

Use of propidium monoazide for selective profiling of viable microbial cells during Gouda cheese ripening.

Erkus O, de Jager VC, Geene RT, van Alen-Boerrigter I, Hazelwood L, van Hijum SA, Kleerebezem M, Smid EJ.

Int J Food Microbiol. 2016 Jul 2;228:1-9. doi: 10.1016/j.ijfoodmicro.2016.03.027. Epub 2016 Mar 25.

PMID:
27077825
28.

Effect of a long-term high-protein diet on survival, obesity development, and gut microbiota in mice.

Kiilerich P, Myrmel LS, Fjære E, Hao Q, Hugenholtz F, Sonne SB, Derrien M, Pedersen LM, Petersen RK, Mortensen A, Licht TR, Rømer MU, Vogel UB, Waagbø LJ, Giallourou N, Feng Q, Xiao L, Liu C, Liaset B, Kleerebezem M, Wang J, Madsen L, Kristiansen K.

Am J Physiol Endocrinol Metab. 2016 Jun 1;310(11):E886-99. doi: 10.1152/ajpendo.00363.2015. Epub 2016 Mar 29.

29.

Exopolysaccharides produced by lactic acid bacteria: from health-promoting benefits to stress tolerance mechanisms.

Caggianiello G, Kleerebezem M, Spano G.

Appl Microbiol Biotechnol. 2016 May;100(9):3877-86. doi: 10.1007/s00253-016-7471-2. Epub 2016 Mar 28. Review.

PMID:
27020288
30.

Draft Genome Sequence of Lactobacillus plantarum SF2A35B.

Bron PA, Lee IC, Backus L, van Hijum SA, Wels M, Kleerebezem M.

Genome Announc. 2016 Feb 25;4(1). pii: e01638-15. doi: 10.1128/genomeA.01638-15.

31.

Identification of Commensal Species Positively Correlated with Early Stress Responses to a Compromised Mucus Barrier.

Sovran B, Lu P, Loonen LM, Hugenholtz F, Belzer C, Stolte EH, Boekschoten MV, van Baarlen P, Smidt H, Kleerebezem M, de Vos P, Renes IB, Wells JM, Dekker J.

Inflamm Bowel Dis. 2016 Apr;22(4):826-40. doi: 10.1097/MIB.0000000000000688.

PMID:
26926038
32.

Complete Genome Sequence of Streptococcus salivarius HSISS4, a Human Commensal Bacterium Highly Prevalent in the Digestive Tract.

Mignolet J, Fontaine L, Kleerebezem M, Hols P.

Genome Announc. 2016 Feb 4;4(1). pii: e01637-15. doi: 10.1128/genomeA.01637-15.

33.

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline.

Davids M, Hugenholtz F, Martins dos Santos V, Smidt H, Kleerebezem M, Schaap PJ.

PLoS One. 2016 Jan 12;11(1):e0146423. doi: 10.1371/journal.pone.0146423. eCollection 2016.

34.

Characterization of the transcriptional regulation of the tarIJKL locus involved in ribitol-containing wall teichoic acid biosynthesis in Lactobacillus plantarum.

Tomita S, Lee IC, van Swam II, Boeren S, Vervoort J, Bron PA, Kleerebezem M.

Microbiology. 2016 Feb;162(2):420-32. doi: 10.1099/mic.0.000229. Epub 2015 Dec 17.

PMID:
26678992
35.

Resequencing of the Lactobacillus plantarum Strain WJL Genome.

Martino ME, Bayjanov JR, Joncour P, Hughes S, Gillet B, Kleerebezem M, Siezen R, van Hijum SA, Leulier F.

Genome Announc. 2015 Nov 25;3(6). pii: e01382-15. doi: 10.1128/genomeA.01382-15.

36.

Nearly Complete Genome Sequence of Lactobacillus plantarum Strain NIZO2877.

Martino ME, Bayjanov JR, Joncour P, Hughes S, Gillet B, Kleerebezem M, Siezen R, van Hijum SA, Leulier F.

Genome Announc. 2015 Nov 25;3(6). pii: e01370-15. doi: 10.1128/genomeA.01370-15.

37.

Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon.

Ijssennagger N, Belzer C, Hooiveld GJ, Dekker J, van Mil SW, Müller M, Kleerebezem M, van der Meer R.

Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):10038-43. doi: 10.1073/pnas.1507645112. Epub 2015 Jul 27.

38.

Towards microbial fermentation metabolites as markers for health benefits of prebiotics.

Verbeke KA, Boobis AR, Chiodini A, Edwards CA, Franck A, Kleerebezem M, Nauta A, Raes J, van Tol EA, Tuohy KM.

Nutr Res Rev. 2015 Jun;28(1):42-66. doi: 10.1017/S0954422415000037. Review.

39.

Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions.

Versluis D, D'Andrea MM, Ramiro Garcia J, Leimena MM, Hugenholtz F, Zhang J, Öztürk B, Nylund L, Sipkema D, van Schaik W, de Vos WM, Kleerebezem M, Smidt H, van Passel MW.

Sci Rep. 2015 Jul 8;5:11981. doi: 10.1038/srep11981.

40.

Correlation of Lactobacillus rhamnosus Genotypes and Carbohydrate Utilization Signatures Determined by Phenotype Profiling.

Ceapa C, Lambert J, van Limpt K, Wels M, Smokvina T, Knol J, Kleerebezem M.

Appl Environ Microbiol. 2015 Aug 15;81(16):5458-70. doi: 10.1128/AEM.00851-15. Epub 2015 Jun 5.

41.

Physiological and Transcriptional Responses of Different Industrial Microbes at Near-Zero Specific Growth Rates.

Ercan O, Bisschops MM, Overkamp W, Jørgensen TR, Ram AF, Smid EJ, Pronk JT, Kuipers OP, Daran-Lapujade P, Kleerebezem M.

Appl Environ Microbiol. 2015 Sep 1;81(17):5662-70. doi: 10.1128/AEM.00944-15. Epub 2015 Jun 5. Review.

42.

Comparison of the effects of five dietary fibers on mucosal transcriptional profiles, and luminal microbiota composition and SCFA concentrations in murine colon.

Lange K, Hugenholtz F, Jonathan MC, Schols HA, Kleerebezem M, Smidt H, Müller M, Hooiveld GJ.

Mol Nutr Food Res. 2015 Aug;59(8):1590-602. doi: 10.1002/mnfr.201400597. Epub 2015 Jun 17.

PMID:
25914036
43.

Editorial overview: Food biotechnology: microbial ecosystem management: strategies to adapt ecosystems to improve performance and health impact.

Kleerebezem M, Lacroix C.

Curr Opin Biotechnol. 2015 Apr;32:v-viii. doi: 10.1016/j.copbio.2015.02.009. Epub 2015 Feb 27. No abstract available.

PMID:
25736703
44.

TLR signaling-induced CD103-expressing cells protect against intestinal inflammation.

Wittmann A, Bron PA, van Swam II, Kleerebezem M, Adam P, Gronbach K, Menz S, Flade I, Bender A, Schäfer A, Korkmaz AG, Parusel R, Autenrieth IB, Frick JS.

Inflamm Bowel Dis. 2015 Mar;21(3):507-19. doi: 10.1097/MIB.0000000000000292.

PMID:
25647153
45.

Genome-wide transcriptional responses to carbon starvation in nongrowing Lactococcus lactis.

Ercan O, Wels M, Smid EJ, Kleerebezem M.

Appl Environ Microbiol. 2015 Apr;81(7):2554-61. doi: 10.1128/AEM.03748-14. Epub 2015 Jan 30.

46.

IL-22-STAT3 pathway plays a key role in the maintenance of ileal homeostasis in mice lacking secreted mucus barrier.

Sovran B, Loonen LM, Lu P, Hugenholtz F, Belzer C, Stolte EH, Boekschoten MV, van Baarlen P, Kleerebezem M, de Vos P, Dekker J, Renes IB, Wells JM.

Inflamm Bowel Dis. 2015 Mar;21(3):531-42. doi: 10.1097/MIB.0000000000000319.

PMID:
25636123
47.

T lymphocytes control microbial composition by regulating the abundance of Vibrio in the zebrafish gut.

Brugman S, Schneeberger K, Witte M, Klein MR, van den Bogert B, Boekhorst J, Timmerman HM, Boes ML, Kleerebezem M, Nieuwenhuis EE.

Gut Microbes. 2014;5(6):737-47. doi: 10.4161/19490976.2014.972228.

48.

Immunomodulatory properties of Streptococcus and Veillonella isolates from the human small intestine microbiota.

van den Bogert B, Meijerink M, Zoetendal EG, Wells JM, Kleerebezem M.

PLoS One. 2014 Dec 5;9(12):e114277. doi: 10.1371/journal.pone.0114277. eCollection 2014.

49.

Physiological and cell morphology adaptation of Bacillus subtilis at near-zero specific growth rates: a transcriptome analysis.

Overkamp W, Ercan O, Herber M, van Maris AJ, Kleerebezem M, Kuipers OP.

Environ Microbiol. 2015 Feb;17(2):346-63. doi: 10.1111/1462-2920.12676. Epub 2014 Dec 17.

PMID:
25367190
50.

Molecular and metabolic adaptations of Lactococcus lactis at near-zero growth rates.

Ercan O, Wels M, Smid EJ, Kleerebezem M.

Appl Environ Microbiol. 2015 Jan;81(1):320-31. doi: 10.1128/AEM.02484-14. Epub 2014 Oct 24.

Supplemental Content

Loading ...
Support Center