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The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor.

Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Blanca J, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z.

Nat Genet. 2019 Jun;51(6):1044-1051. doi: 10.1038/s41588-019-0410-2. Epub 2019 May 13.


Meta-analysis of genome-wide association studies provides insights into genetic control of tomato flavor.

Zhao J, Sauvage C, Zhao J, Bitton F, Bauchet G, Liu D, Huang S, Tieman DM, Klee HJ, Causse M.

Nat Commun. 2019 Apr 4;10(1):1534. doi: 10.1038/s41467-019-09462-w.


An ETHYLENE RESPONSE FACTOR-MYB Transcription Complex Regulates Furaneol Biosynthesis by Activating QUINONE OXIDOREDUCTASE Expression in Strawberry.

Zhang Y, Yin X, Xiao Y, Zhang Z, Li S, Liu X, Zhang B, Yang X, Grierson D, Jiang G, Klee HJ, Chen K.

Plant Physiol. 2018 Sep;178(1):189-201. doi: 10.1104/pp.18.00598. Epub 2018 Jul 9.


Quantitative Trait Loci Analysis Identifies a Prominent Gene Involved in the Production of Fatty Acid-Derived Flavor Volatiles in Tomato.

Garbowicz K, Liu Z, Alseekh S, Tieman D, Taylor M, Kuhalskaya A, Ofner I, Zamir D, Klee HJ, Fernie AR, Brotman Y.

Mol Plant. 2018 Sep 10;11(9):1147-1165. doi: 10.1016/j.molp.2018.06.003. Epub 2018 Jun 28.


Development and characterization of a high quality plum tomato essence.

Zhu Y, Klee HJ, Sarnoski PJ.

Food Chem. 2018 Nov 30;267:337-343. doi: 10.1016/j.foodchem.2017.07.160. Epub 2017 Aug 4.


A Comparison of the Effects of FATTY ACID DESATURASE 7 and HYDROPEROXIDE LYASE on Plant-Aphid Interactions.

Li J, Avila CA, Tieman DM, Klee HJ, Goggin FL.

Int J Mol Sci. 2018 Apr 4;19(4). pii: E1077. doi: 10.3390/ijms19041077.


The genetics of fruit flavour preferences.

Klee HJ, Tieman DM.

Nat Rev Genet. 2018 Jun;19(6):347-356. doi: 10.1038/s41576-018-0002-5. Review.


Sensory and Flavor Characteristics of Tomato Juice from Garden Gem and Roma Tomatoes with Comparison to Commercial Tomato Juice.

Zhu Y, Sims CA, Klee HJ, Sarnoski PJ.

J Food Sci. 2018 Jan;83(1):153-161. doi: 10.1111/1750-3841.13980. Epub 2017 Nov 14.


Genetic Control of Floral Architecture: Insights into Improving Crop Yield.

Klee HJ.

Cell. 2017 Jun 1;169(6):983-984. doi: 10.1016/j.cell.2017.05.026.


Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL.

Liu Z, Alseekh S, Brotman Y, Zheng Y, Fei Z, Tieman DM, Giovannoni JJ, Fernie AR, Klee HJ.

Front Plant Sci. 2016 Nov 9;7:1671. eCollection 2016.


Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation.

Zhang B, Tieman DM, Jiao C, Xu Y, Chen K, Fei Z, Giovannoni JJ, Klee HJ.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):12580-12585. Epub 2016 Oct 17. Erratum in: Proc Natl Acad Sci U S A. 2016 Nov 21;:.


Sensory sacrifices when we mass-produce mass produce.

Folta KM, Klee HJ.

Hortic Res. 2016 Jul 13;3:16032. doi: 10.1038/hortres.2016.32. eCollection 2016. Review.


Altered metabolite accumulation in tomato fruits by coexpressing a feedback-insensitive AroG and the PhODO1 MYB-type transcription factor.

Xie Q, Liu Z, Meir S, Rogachev I, Aharoni A, Klee HJ, Galili G.

Plant Biotechnol J. 2016 Dec;14(12):2300-2309. doi: 10.1111/pbi.12583. Epub 2016 Jun 22.


Analyses of Plant UDP-Dependent Glycosyltransferases to Identify Their Volatile Substrates Using Recombinant Proteins.

Kamiyoshihara Y, Tieman DM, Klee HJ.

Methods Mol Biol. 2016;1363:199-207. doi: 10.1007/978-1-4939-3115-6_16.


Divergence in the enzymatic activities of a tomato and Solanum pennellii alcohol acyltransferase impacts fruit volatile ester composition.

Goulet C, Kamiyoshihara Y, Lam NB, Richard T, Taylor MG, Tieman DM, Klee HJ.

Mol Plant. 2015 Jan;8(1):153-62. doi: 10.1016/j.molp.2014.11.007. Epub 2014 Dec 11.


Divergence in the Enzymatic Activities of a Tomato and Solanum pennellii Alcohol Acyltransferase Impacts Fruit Volatile Ester Composition.

Goulet C, Kamiyoshihara Y, Lam NB, Richard T, Taylor MG, Tieman DM, Klee HJ.

Mol Plant. 2014 Oct 29. pii: ssu124. [Epub ahead of print]


Strawberry flavor: diverse chemical compositions, a seasonal influence, and effects on sensory perception.

Schwieterman ML, Colquhoun TA, Jaworski EA, Bartoshuk LM, Gilbert JL, Tieman DM, Odabasi AZ, Moskowitz HR, Folta KM, Klee HJ, Sims CA, Whitaker VM, Clark DG.

PLoS One. 2014 Feb 11;9(2):e88446. doi: 10.1371/journal.pone.0088446. eCollection 2014.


A 13-lipoxygenase, TomloxC, is essential for synthesis of C5 flavour volatiles in tomato.

Shen J, Tieman D, Jones JB, Taylor MG, Schmelz E, Huffaker A, Bies D, Chen K, Klee HJ.

J Exp Bot. 2014 Feb;65(2):419-28. doi: 10.1093/jxb/ert382. Epub 2014 Jan 22.


Purple tomatoes: longer lasting, less disease, and better for you.

Klee HJ.

Curr Biol. 2013 Jun 17;23(12):R520-1. doi: 10.1016/j.cub.2013.05.010.


Better fruits and vegetables through sensory analysis.

Bartoshuk LM, Klee HJ.

Curr Biol. 2013 May 6;23(9):R374-8. doi: 10.1016/j.cub.2013.03.038. Review.


Genetic challenges of flavor improvement in tomato.

Klee HJ, Tieman DM.

Trends Genet. 2013 Apr;29(4):257-62. doi: 10.1016/j.tig.2012.12.003. Epub 2013 Jan 14. Review.


Role of an esterase in flavor volatile variation within the tomato clade.

Goulet C, Mageroy MH, Lam NB, Floystad A, Tieman DM, Klee HJ.

Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):19009-14. doi: 10.1073/pnas.1216515109. Epub 2012 Oct 29.


Diverse roles of strigolactone signaling in maize architecture and the uncoupling of a branching-specific subnetwork.

Guan JC, Koch KE, Suzuki M, Wu S, Latshaw S, Petruff T, Goulet C, Klee HJ, McCarty DR.

Plant Physiol. 2012 Nov;160(3):1303-17. doi: 10.1104/pp.112.204503. Epub 2012 Sep 6.


Ligand-induced alterations in the phosphorylation state of ethylene receptors in tomato fruit.

Kamiyoshihara Y, Tieman DM, Huber DJ, Klee HJ.

Plant Physiol. 2012 Sep;160(1):488-97. doi: 10.1104/pp.112.202820. Epub 2012 Jul 13.


The chemical interactions underlying tomato flavor preferences.

Tieman D, Bliss P, McIntyre LM, Blandon-Ubeda A, Bies D, Odabasi AZ, Rodríguez GR, van der Knaap E, Taylor MG, Goulet C, Mageroy MH, Snyder DJ, Colquhoun T, Moskowitz H, Clark DG, Sims C, Bartoshuk L, Klee HJ.

Curr Biol. 2012 Jun 5;22(11):1035-9. doi: 10.1016/j.cub.2012.04.016. Epub 2012 May 24.


Molecular identification of a further branched-chain aminotransferase 7 (BCAT7) in tomato plants.

Kochevenko A, Klee HJ, Fernie AR, Araújo WL.

J Plant Physiol. 2012 Mar 15;169(5):437-43. doi: 10.1016/j.jplph.2011.12.002. Epub 2012 Jan 5.


Catabolism of branched chain amino acids supports respiration but not volatile synthesis in tomato fruits.

Kochevenko A, Araújo WL, Maloney GS, Tieman DM, Do PT, Taylor MG, Klee HJ, Fernie AR.

Mol Plant. 2012 Mar;5(2):366-75. doi: 10.1093/mp/ssr108. Epub 2011 Dec 22.


A Solanum lycopersicum catechol-O-methyltransferase involved in synthesis of the flavor molecule guaiacol.

Mageroy MH, Tieman DM, Floystad A, Taylor MG, Klee HJ.

Plant J. 2012 Mar;69(6):1043-51. doi: 10.1111/j.1365-313X.2011.04854.x. Epub 2011 Dec 28.


Genetics and control of tomato fruit ripening and quality attributes.

Klee HJ, Giovannoni JJ.

Annu Rev Genet. 2011;45:41-59. doi: 10.1146/annurev-genet-110410-132507. Review.


Identification of genes in the phenylalanine metabolic pathway by ectopic expression of a MYB transcription factor in tomato fruit.

Dal Cin V, Tieman DM, Tohge T, McQuinn R, de Vos RC, Osorio S, Schmelz EA, Taylor MG, Smits-Kroon MT, Schuurink RC, Haring MA, Giovannoni J, Fernie AR, Klee HJ.

Plant Cell. 2011 Jul;23(7):2738-53. doi: 10.1105/tpc.111.086975. Epub 2011 Jul 12.


The use of natural genetic diversity in the understanding of metabolic organization and regulation.

Fernie AR, Klee HJ.

Front Plant Sci. 2011 Sep 30;2:59. doi: 10.3389/fpls.2011.00059. eCollection 2011.


Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics.

Fei Z, Joung JG, Tang X, Zheng Y, Huang M, Lee JM, McQuinn R, Tieman DM, Alba R, Klee HJ, Giovannoni JJ.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1156-63. doi: 10.1093/nar/gkq991. Epub 2010 Oct 21.


Climbing the branches of the strigolactones pathway one discovery at a time.

Goulet C, Klee HJ.

Plant Physiol. 2010 Oct;154(2):493-6. doi: 10.1104/pp.110.161026. No abstract available.


Structural insights into maize viviparous14, a key enzyme in the biosynthesis of the phytohormone abscisic acid.

Messing SA, Gabelli SB, Echeverria I, Vogel JT, Guan JC, Tan BC, Klee HJ, McCarty DR, Amzel LM.

Plant Cell. 2010 Sep;22(9):2970-80. doi: 10.1105/tpc.110.074815. Epub 2010 Sep 30.


Carotenoid content impacts flavor acceptability in tomato (Solanum lycopersicum).

Vogel JT, Tieman DM, Sims CA, Odabasi AZ, Clark DG, Klee HJ.

J Sci Food Agric. 2010 Oct;90(13):2233-40. doi: 10.1002/jsfa.4076.


Improving the flavor of fresh fruits: genomics, biochemistry, and biotechnology.

Klee HJ.

New Phytol. 2010 Jul;187(1):44-56. doi: 10.1111/j.1469-8137.2010.03281.x. Epub 2010 Apr 28. Review.


Characterization of the branched-chain amino acid aminotransferase enzyme family in tomato.

Maloney GS, Kochevenko A, Tieman DM, Tohge T, Krieger U, Zamir D, Taylor MG, Fernie AR, Klee HJ.

Plant Physiol. 2010 Jul;153(3):925-36. doi: 10.1104/pp.110.154922. Epub 2010 Apr 30.


Functional analysis of a tomato salicylic acid methyl transferase and its role in synthesis of the flavor volatile methyl salicylate.

Tieman D, Zeigler M, Schmelz E, Taylor MG, Rushing S, Jones JB, Klee HJ.

Plant J. 2010 Apr 1;62(1):113-23. doi: 10.1111/j.1365-313X.2010.04128.x. Epub 2010 Jan 7.


SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato.

Vogel JT, Walter MH, Giavalisco P, Lytovchenko A, Kohlen W, Charnikhova T, Simkin AJ, Goulet C, Strack D, Bouwmeester HJ, Fernie AR, Klee HJ.

Plant J. 2010 Jan;61(2):300-11. doi: 10.1111/j.1365-313X.2009.04056.x. Epub 2009 Oct 20.


Plant MetGenMAP: an integrative analysis system for plant systems biology.

Joung JG, Corbett AM, Fellman SM, Tieman DM, Klee HJ, Giovannoni JJ, Fei Z.

Plant Physiol. 2009 Dec;151(4):1758-68. doi: 10.1104/pp.109.145169. Epub 2009 Oct 9.


Identification of Solanum habrochaites loci that quantitatively influence tomato fruit ripening-associated ethylene emissions.

Dal Cin V, Kevany B, Fei Z, Klee HJ.

Theor Appl Genet. 2009 Nov;119(7):1183-92. doi: 10.1007/s00122-009-1119-x. Epub 2009 Aug 13.


Flavour compounds in tomato fruits: identification of loci and potential pathways affecting volatile composition.

Mathieu S, Cin VD, Fei Z, Li H, Bliss P, Taylor MG, Klee HJ, Tieman DM.

J Exp Bot. 2009;60(1):325-37. doi: 10.1093/jxb/ern294. Epub 2008 Dec 16.


The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificity, cleaving multiple carotenoids at two different bond positions.

Vogel JT, Tan BC, McCarty DR, Klee HJ.

J Biol Chem. 2008 Apr 25;283(17):11364-73. doi: 10.1074/jbc.M710106200. Epub 2008 Feb 19.


Fruit-specific suppression of the ethylene receptor LeETR4 results in early-ripening tomato fruit.

Kevany BM, Taylor MG, Klee HJ.

Plant Biotechnol J. 2008 Apr;6(3):295-300. Epub 2007 Dec 11.


Ethylene receptor degradation controls the timing of ripening in tomato fruit.

Kevany BM, Tieman DM, Taylor MG, Cin VD, Klee HJ.

Plant J. 2007 Aug;51(3):458-67.


Tomato phenylacetaldehyde reductases catalyze the last step in the synthesis of the aroma volatile 2-phenylethanol.

Tieman DM, Loucas HM, Kim JY, Clark DG, Klee HJ.

Phytochemistry. 2007 Nov;68(21):2660-9. Epub 2007 Jul 17.


Pod shatter-resistant Brassica fruit produced by ectopic expression of the FRUITFULL gene.

Østergaard L, Kempin SA, Bies D, Klee HJ, Yanofsky MF.

Plant Biotechnol J. 2006 Jan;4(1):45-51.


Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde.

Tieman D, Taylor M, Schauer N, Fernie AR, Hanson AD, Klee HJ.

Proc Natl Acad Sci U S A. 2006 May 23;103(21):8287-92. Epub 2006 May 12.


Plant carotenoid cleavage oxygenases and their apocarotenoid products.

Auldridge ME, McCarty DR, Klee HJ.

Curr Opin Plant Biol. 2006 Jun;9(3):315-21. Epub 2006 Apr 17. Review.


Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates the divergent roles of this multifunctional enzyme family.

Auldridge ME, Block A, Vogel JT, Dabney-Smith C, Mila I, Bouzayen M, Magallanes-Lundback M, DellaPenna D, McCarty DR, Klee HJ.

Plant J. 2006 Mar;45(6):982-93.

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