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Items: 33

1.

Efomycins K and L From a Termite-Associated Streptomyces sp. M56 and Their Putative Biosynthetic Origin.

Klassen JL, Lee SR, Poulsen M, Beemelmanns C, Kim KH.

Front Microbiol. 2019 Aug 6;10:1739. doi: 10.3389/fmicb.2019.01739. eCollection 2019.

2.

Keeping it fresh.

Klassen JL.

Elife. 2019 Jun 12;8. pii: e48268. doi: 10.7554/eLife.48268.

3.

Evaluation of DESS as a storage medium for microbial community analysis.

Lee KM, Adams M, Klassen JL.

PeerJ. 2019 Feb 5;7:e6414. doi: 10.7717/peerj.6414. eCollection 2019.

4.

The antimicrobial potential of Streptomyces from insect microbiomes.

Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J, Carlos C, Flanigan W, Grubbs KJ, Horn HA, Hoffmann FM, Klassen JL, Knack JJ, Lewin GR, McDonald BR, Muller L, Melo WGP, Pinto-Tomás AA, Schmitz A, Wendt-Pienkowski E, Wildman S, Zhao M, Zhang F, Bugni TS, Andes DR, Pupo MT, Currie CR.

Nat Commun. 2019 Jan 31;10(1):516. doi: 10.1038/s41467-019-08438-0.

5.

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.

Goldstein S, Beka L, Graf J, Klassen JL.

BMC Genomics. 2019 Jan 9;20(1):23. doi: 10.1186/s12864-018-5381-7.

6.

High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants.

Kopac S, Beatty H, Gialopsos P, Huntemann M, Clum A, Spunde A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Ng V, Ivanova N, Kyrpides N, Woyke T, Klassen JL.

Microbiol Resour Announc. 2018 Jul 19;7(2). pii: e00871-18. doi: 10.1128/MRA.00871-18. eCollection 2018 Jul.

7.

Defining microbiome function.

Klassen JL.

Nat Microbiol. 2018 Aug;3(8):864-869. doi: 10.1038/s41564-018-0189-4. Epub 2018 Jul 25. Review.

PMID:
30046174
8.

Propagating annotations of molecular networks using in silico fragmentation.

da Silva RR, Wang M, Nothias LF, van der Hooft JJJ, Caraballo-Rodríguez AM, Fox E, Balunas MJ, Klassen JL, Lopes NP, Dorrestein PC.

PLoS Comput Biol. 2018 Apr 18;14(4):e1006089. doi: 10.1371/journal.pcbi.1006089. eCollection 2018 Apr.

9.

Isolation, Biosynthesis and Chemical Modifications of Rubterolones A-F: Rare Tropolone Alkaloids from Actinomadura sp. 5-2.

Guo H, Benndorf R, Leichnitz D, Klassen JL, Vollmers J, Görls H, Steinacker M, Weigel C, Dahse HM, Kaster AK, de Beer ZW, Poulsen M, Beemelmanns C.

Chemistry. 2017 Jul 12;23(39):9338-9345. doi: 10.1002/chem.201701005. Epub 2017 Jun 21.

PMID:
28463423
10.

Linear Peptides Are the Major Products of a Biosynthetic Pathway That Encodes for Cyclic Depsipeptides.

Wyche TP, Ruzzini AC, Beemelmanns C, Kim KH, Klassen JL, Cao S, Poulsen M, Bugni TS, Currie CR, Clardy J.

Org Lett. 2017 Apr 7;19(7):1772-1775. doi: 10.1021/acs.orglett.7b00545. Epub 2017 Mar 22.

11.

Macrotermycins A-D, Glycosylated Macrolactams from a Termite-Associated Amycolatopsis sp. M39.

Beemelmanns C, Ramadhar TR, Kim KH, Klassen JL, Cao S, Wyche TP, Hou Y, Poulsen M, Bugni TS, Currie CR, Clardy J.

Org Lett. 2017 Mar 3;19(5):1000-1003. doi: 10.1021/acs.orglett.6b03831. Epub 2017 Feb 16.

12.

Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes.

Theis KR, Dheilly NM, Klassen JL, Brucker RM, Baines JF, Bosch TC, Cryan JF, Gilbert SF, Goodnight CJ, Lloyd EA, Sapp J, Vandenkoornhuyse P, Zilber-Rosenberg I, Rosenberg E, Bordenstein SR.

mSystems. 2016 Mar 29;1(2). pii: e00028-16. eCollection 2016 Mar-Apr.

13.

Can They Make It on Their Own? Hosts, Microbes, and the Holobiont Niche.

Kopac SM, Klassen JL.

Front Microbiol. 2016 Oct 21;7:1647. eCollection 2016.

14.

Draft Genome Sequence of Streptomyces sp. AVP053U2 Isolated from Styela clava, a Tunicate Collected in Long Island Sound.

deMayo JA, Maas KR, Klassen JL, Balunas MJ.

Genome Announc. 2016 Oct 13;4(5). pii: e00874-16. doi: 10.1128/genomeA.00874-16.

15.

Draft Genome Sequence of Streptomyces sp. Strain PTY087I2, Isolated from Styela canopus, a Panamanian Tunicate.

Gromek SM, Sung AA, Klassen JL, Balunas MJ.

Genome Announc. 2016 Sep 15;4(5). pii: e00856-16. doi: 10.1128/genomeA.00856-16.

16.

Draft Genome Sequence of Shewanella sp. Strain P1-14-1, a Bacterial Inducer of Settlement and Morphogenesis in Larvae of the Marine Hydroid Hydractinia echinata.

Rischer M, Klassen JL, Wolf T, Guo H, Shelest E, Clardy J, Beemelmanns C.

Genome Announc. 2016 Feb 18;4(1). pii: e00003-16. doi: 10.1128/genomeA.00003-16.

17.

Draft Genome Sequences of Six Pseudoalteromonas Strains, P1-7a, P1-9, P1-13-1a, P1-16-1b, P1-25, and P1-26, Which Induce Larval Settlement and Metamorphosis in Hydractinia echinata.

Klassen JL, Wolf T, Rischer M, Guo H, Shelest E, Clardy J, Beemelmanns C.

Genome Announc. 2015 Dec 17;3(6). pii: e01477-15. doi: 10.1128/genomeA.01477-15.

18.

Genome Sequences of Three Pseudoalteromonas Strains (P1-8, P1-11, and P1-30), Isolated from the Marine Hydroid Hydractinia echinata.

Klassen JL, Rischer M, Wolf T, Guo H, Shelest E, Clardy J, Beemelmanns C.

Genome Announc. 2015 Dec 10;3(6). pii: e01380-15. doi: 10.1128/genomeA.01380-15.

19.

Comparison of Xenorhabdus bovienii bacterial strain genomes reveals diversity in symbiotic functions.

Murfin KE, Whooley AC, Klassen JL, Goodrich-Blair H.

BMC Genomics. 2015 Nov 2;16:889. doi: 10.1186/s12864-015-2000-8.

20.

Minimum Information about a Biosynthetic Gene cluster.

Medema MH, Kottmann R, Yilmaz P, Cummings M, Biggins JB, Blin K, de Bruijn I, Chooi YH, Claesen J, Coates RC, Cruz-Morales P, Duddela S, Düsterhus S, Edwards DJ, Fewer DP, Garg N, Geiger C, Gomez-Escribano JP, Greule A, Hadjithomas M, Haines AS, Helfrich EJ, Hillwig ML, Ishida K, Jones AC, Jones CS, Jungmann K, Kegler C, Kim HU, Kötter P, Krug D, Masschelein J, Melnik AV, Mantovani SM, Monroe EA, Moore M, Moss N, Nützmann HW, Pan G, Pati A, Petras D, Reen FJ, Rosconi F, Rui Z, Tian Z, Tobias NJ, Tsunematsu Y, Wiemann P, Wyckoff E, Yan X, Yim G, Yu F, Xie Y, Aigle B, Apel AK, Balibar CJ, Balskus EP, Barona-Gómez F, Bechthold A, Bode HB, Borriss R, Brady SF, Brakhage AA, Caffrey P, Cheng YQ, Clardy J, Cox RJ, De Mot R, Donadio S, Donia MS, van der Donk WA, Dorrestein PC, Doyle S, Driessen AJ, Ehling-Schulz M, Entian KD, Fischbach MA, Gerwick L, Gerwick WH, Gross H, Gust B, Hertweck C, Höfte M, Jensen SE, Ju J, Katz L, Kaysser L, Klassen JL, Keller NP, Kormanec J, Kuipers OP, Kuzuyama T, Kyrpides NC, Kwon HJ, Lautru S, Lavigne R, Lee CY, Linquan B, Liu X, Liu W, Luzhetskyy A, Mahmud T, Mast Y, Méndez C, Metsä-Ketelä M, Micklefield J, Mitchell DA, Moore BS, Moreira LM, Müller R, Neilan BA, Nett M, Nielsen J, O'Gara F, Oikawa H, Osbourn A, Osburne MS, Ostash B, Payne SM, Pernodet JL, Petricek M, Piel J, Ploux O, Raaijmakers JM, Salas JA, Schmitt EK, Scott B, Seipke RF, Shen B, Sherman DH, Sivonen K, Smanski MJ, Sosio M, Stegmann E, Süssmuth RD, Tahlan K, Thomas CM, Tang Y, Truman AW, Viaud M, Walton JD, Walsh CT, Weber T, van Wezel GP, Wilkinson B, Willey JM, Wohlleben W, Wright GD, Ziemert N, Zhang C, Zotchev SB, Breitling R, Takano E, Glöckner FO.

Nat Chem Biol. 2015 Sep;11(9):625-31. doi: 10.1038/nchembio.1890. No abstract available.

21.

Xenorhabdus bovienii Strain Diversity Impacts Coevolution and Symbiotic Maintenance with Steinernema spp. Nematode Hosts.

Murfin KE, Lee MM, Klassen JL, McDonald BR, Larget B, Forst S, Stock SP, Currie CR, Goodrich-Blair H.

MBio. 2015 Jun 4;6(3):e00076. doi: 10.1128/mBio.00076-15.

22.

Microbial secondary metabolites and their impacts on insect symbioses.

Klassen JL.

Curr Opin Insect Sci. 2014 Oct;4:15-22. doi: 10.1016/j.cois.2014.08.004. Epub 2014 Aug 19. Review.

PMID:
28043403
23.

ORFcor: identifying and accommodating ORF prediction inconsistencies for phylogenetic analysis.

Klassen JL, Currie CR.

PLoS One. 2013;8(3):e58387. doi: 10.1371/journal.pone.0058387. Epub 2013 Mar 6.

24.

Microtermolides A and B from termite-associated Streptomyces sp. and structural revision of vinylamycin.

Carr G, Poulsen M, Klassen JL, Hou Y, Wyche TP, Bugni TS, Currie CR, Clardy J.

Org Lett. 2012 Jun 1;14(11):2822-5. doi: 10.1021/ol301043p. Epub 2012 May 16.

25.

Microbial strain prioritization using metabolomics tools for the discovery of natural products.

Hou Y, Braun DR, Michel CR, Klassen JL, Adnani N, Wyche TP, Bugni TS.

Anal Chem. 2012 May 15;84(10):4277-83. doi: 10.1021/ac202623g. Epub 2012 May 3.

26.

Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation.

Klassen JL, Currie CR.

BMC Genomics. 2012 Jan 10;13:14. doi: 10.1186/1471-2164-13-14.

27.

Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb.

Klassen JL, Adams SM, Bramhacharya S, Giles SS, Goodwin LA, Woyke T, Currie CR.

J Bacteriol. 2011 Dec;193(24):6999-7000. doi: 10.1128/JB.06257-11.

28.

Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete.

Grubbs KJ, Biedermann PH, Suen G, Adams SM, Moeller JA, Klassen JL, Goodwin LA, Woyke T, Munk AC, Bruce D, Detter C, Tapia R, Han CS, Currie CR.

J Bacteriol. 2011 Jun;193(11):2890-1. doi: 10.1128/JB.00330-11. Epub 2011 Apr 1.

29.

Characterization of Hymenobacter isolates from Victoria Upper Glacier, Antarctica reveals five new species and substantial non-vertical evolution within this genus.

Klassen JL, Foght JM.

Extremophiles. 2011 Jan;15(1):45-57. doi: 10.1007/s00792-010-0336-1. Epub 2010 Nov 21.

PMID:
21104190
30.
32.

Bacterial diversity associated with ornithogenic soil of the Ross Sea region, Antarctica.

Aislabie J, Jordan S, Ayton J, Klassen JL, Barker GM, Turner S.

Can J Microbiol. 2009 Jan;55(1):21-36. doi: 10.1139/W08-126.

PMID:
19190698
33.

Differences in carotenoid composition among hymenobacter and related strains support a tree-like model of carotenoid evolution.

Klassen JL, Foght JM.

Appl Environ Microbiol. 2008 Apr;74(7):2016-22. doi: 10.1128/AEM.02306-07. Epub 2008 Feb 8.

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