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Items: 1 to 50 of 269

1.

Influence of Labeling on the Glycan Affinities and Specificities of Glycan-Binding Proteins. A Case Study Involving a C-terminal Fragment of Human Galectin 3.

Kitova EN, Han L, Vinals DF, Kitov PI, Derda R, Klassen JS.

Glycobiology. 2019 Sep 16. pii: cwz076. doi: 10.1093/glycob/cwz076. [Epub ahead of print]

PMID:
31529034
2.

Efomycins K and L From a Termite-Associated Streptomyces sp. M56 and Their Putative Biosynthetic Origin.

Klassen JL, Lee SR, Poulsen M, Beemelmanns C, Kim KH.

Front Microbiol. 2019 Aug 6;10:1739. doi: 10.3389/fmicb.2019.01739. eCollection 2019.

3.

A quantitative, high-throughput method identifies protein-glycan interactions via mass spectrometry.

Kitov PI, Kitova EN, Han L, Li Z, Jung J, Rodrigues E, Hunter CD, Cairo CW, Macauley MS, Klassen JS.

Commun Biol. 2019 Jul 22;2:268. doi: 10.1038/s42003-019-0507-2. eCollection 2019.

4.

Protein hydrolysate versus standard formula for preterm infants.

Ng DHC, Klassen JR, Embleton ND, McGuire W.

Cochrane Database Syst Rev. 2019 Jul 24;7:CD012412. doi: 10.1002/14651858.CD012412.pub3.

PMID:
31339557
5.

Keeping it fresh.

Klassen JL.

Elife. 2019 Jun 12;8. pii: e48268. doi: 10.7554/eLife.48268.

6.

Functional connectivity across social inclusion and exclusion is related to peer victimization and depressive symptoms in young adults.

McIver TA, Bosma RL, Goegan S, Sandre A, Klassen J, Chiarella J, Booij L, Craig W.

J Affect Disord. 2019 Jun 15;253:366-375. doi: 10.1016/j.jad.2019.04.085. Epub 2019 Apr 22.

PMID:
31078837
7.

Sliding Window Adduct Removal Method (SWARM) for Enhanced Electrospray Ionization Mass Spectrometry Binding Data.

Kitov PI, Han L, Kitova EN, Klassen JS.

J Am Soc Mass Spectrom. 2019 Aug;30(8):1446-1454. doi: 10.1007/s13361-019-02204-8. Epub 2019 Apr 25.

PMID:
31025293
8.

Evaluation of DESS as a storage medium for microbial community analysis.

Lee KM, Adams M, Klassen JL.

PeerJ. 2019 Feb 5;7:e6414. doi: 10.7717/peerj.6414. eCollection 2019.

9.

Crystal structures of human lysosomal EPDR1 reveal homology with the superfamily of bacterial lipoprotein transporters.

Wei Y, Xiong ZJ, Li J, Zou C, Cairo CW, Klassen JS, Privé GG.

Commun Biol. 2019 Feb 5;2:52. doi: 10.1038/s42003-018-0262-9. eCollection 2019.

10.

The antimicrobial potential of Streptomyces from insect microbiomes.

Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J, Carlos C, Flanigan W, Grubbs KJ, Horn HA, Hoffmann FM, Klassen JL, Knack JJ, Lewin GR, McDonald BR, Muller L, Melo WGP, Pinto-Tomás AA, Schmitz A, Wendt-Pienkowski E, Wildman S, Zhao M, Zhang F, Bugni TS, Andes DR, Pupo MT, Currie CR.

Nat Commun. 2019 Jan 31;10(1):516. doi: 10.1038/s41467-019-08438-0.

11.

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.

Goldstein S, Beka L, Graf J, Klassen JL.

BMC Genomics. 2019 Jan 9;20(1):23. doi: 10.1186/s12864-018-5381-7.

12.

Multipronged ESI-MS Approach for Studying Glycan-Binding Protein Interactions with Glycoproteins.

Wang Y, Park H, Lin H, Kitova EN, Klassen JS.

Anal Chem. 2019 Feb 5;91(3):2140-2147. doi: 10.1021/acs.analchem.8b04673. Epub 2019 Jan 25.

PMID:
30624066
13.

The small RbcS-like domains of the β-carboxysome structural protein CcmM bind RubisCO at a site distinct from that binding the RbcS subunit.

Ryan P, Forrester TJB, Wroblewski C, Kenney TMG, Kitova EN, Klassen JS, Kimber MS.

J Biol Chem. 2019 Feb 22;294(8):2593-2603. doi: 10.1074/jbc.RA118.006330. Epub 2018 Dec 27.

14.

High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants.

Kopac S, Beatty H, Gialopsos P, Huntemann M, Clum A, Spunde A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Ng V, Ivanova N, Kyrpides N, Woyke T, Klassen JL.

Microbiol Resour Announc. 2018 Jul 19;7(2). pii: e00871-18. doi: 10.1128/MRA.00871-18. eCollection 2018 Jul.

15.

Bioengineered Norovirus S60 Nanoparticles as a Multifunctional Vaccine Platform.

Xia M, Huang P, Sun C, Han L, Vago FS, Li K, Zhong W, Jiang W, Klassen JS, Jiang X, Tan M.

ACS Nano. 2018 Nov 27;12(11):10665-10682. doi: 10.1021/acsnano.8b02776. Epub 2018 Sep 25.

16.

Early intraoperative iron-binding proteins are associated with acute kidney injury after cardiac surgery.

Choi N, Whitlock R, Klassen J, Zappitelli M, Arora RC, Rigatto C, Ho J.

J Thorac Cardiovasc Surg. 2019 Jan;157(1):287-297.e2. doi: 10.1016/j.jtcvs.2018.06.091. Epub 2018 Jul 27.

17.

Cannabinoid Hyperemesis Syndrome Masquerading as Uremia: An Educational Case Report.

Klassen J, Wilson G.

Can J Kidney Health Dis. 2018 Aug 24;5:2054358118791146. doi: 10.1177/2054358118791146. eCollection 2018.

18.

The Peptidisc, a simple method for stabilizing membrane proteins in detergent-free solution.

Carlson ML, Young JW, Zhao Z, Fabre L, Jun D, Li J, Li J, Dhupar HS, Wason I, Mills AT, Beatty JT, Klassen JS, Rouiller I, Duong F.

Elife. 2018 Aug 15;7. pii: e34085. doi: 10.7554/eLife.34085.

19.

Defining microbiome function.

Klassen JL.

Nat Microbiol. 2018 Aug;3(8):864-869. doi: 10.1038/s41564-018-0189-4. Epub 2018 Jul 25. Review.

PMID:
30046174
20.

Propagating annotations of molecular networks using in silico fragmentation.

da Silva RR, Wang M, Nothias LF, van der Hooft JJJ, Caraballo-Rodríguez AM, Fox E, Balunas MJ, Klassen JL, Lopes NP, Dorrestein PC.

PLoS Comput Biol. 2018 Apr 18;14(4):e1006089. doi: 10.1371/journal.pcbi.1006089. eCollection 2018 Apr.

21.

Detecting Protein-Glycolipid Interactions Using CaR-ESI-MS and Model Membranes: Comparison of Pre-loaded and Passively Loaded Picodiscs.

Li J, Han L, Li J, Kitova EN, Xiong ZJ, Privé GG, Klassen JS.

J Am Soc Mass Spectrom. 2018 Jul;29(7):1493-1504. doi: 10.1007/s13361-018-1936-8. Epub 2018 Apr 13.

PMID:
29654535
22.

Quantifying the binding stoichiometry and affinity of histo-blood group antigen oligosaccharides for human noroviruses.

Han L, Zheng R, Richards MR, Tan M, Kitova EN, Jiang X, Klassen JS.

Glycobiology. 2018 Jul 1;28(7):488-498. doi: 10.1093/glycob/cwy028.

23.

Synthetic polyprenol-pyrophosphate linked oligosaccharides are efficient substrates for mycobacterial galactan biosynthetic enzymes.

Xue X, Zheng RB, Koizumi A, Han L, Klassen JS, Lowary TL.

Org Biomol Chem. 2018 Mar 14;16(11):1939-1957. doi: 10.1039/c8ob00316e.

PMID:
29492483
24.

Self-efficacy beliefs of medical students: a critical review.

Klassen RM, Klassen JRL.

Perspect Med Educ. 2018 Apr;7(2):76-82. doi: 10.1007/s40037-018-0411-3. Review.

25.

Human Neuraminidase Isoenzymes Show Variable Activities for 9- O-Acetyl-sialoside Substrates.

Hunter CD, Khanna N, Richards MR, Rezaei Darestani R, Zou C, Klassen JS, Cairo CW.

ACS Chem Biol. 2018 Apr 20;13(4):922-932. doi: 10.1021/acschembio.7b00952. Epub 2018 Feb 13.

PMID:
29341588
26.

Genetically-encoded fragment-based discovery (GE-FBD) of glycopeptide ligands with differential selectivity for antibodies related to mycobacterial infections.

Chou Y, Kitova EN, Joe M, Brunton R, Lowary TL, Klassen JS, Derda R.

Org Biomol Chem. 2018 Jan 3;16(2):223-227. doi: 10.1039/c7ob02783d.

PMID:
29255817
27.

Screening natural libraries of human milk oligosaccharides against lectins using CaR-ESI-MS.

El-Hawiet A, Chen Y, Shams-Ud-Doha K, Kitova EN, Kitov PI, Bode L, Hage N, Falcone FH, Klassen JS.

Analyst. 2018 Jan 15;143(2):536-548. doi: 10.1039/c7an01397c.

PMID:
29239412
28.

Protein hydrolysate versus standard formula for preterm infants.

Ng DHC, Klassen J, Embleton ND, McGuire W.

Cochrane Database Syst Rev. 2017 Oct 2;10:CD012412. doi: 10.1002/14651858.CD012412.pub2. Review. Update in: Cochrane Database Syst Rev. 2019 Jul 24;7:CD012412.

29.

Investigating the Influence of Membrane Composition on Protein-Glycolipid Binding Using Nanodiscs and Proxy Ligand Electrospray Ionization Mass Spectrometry.

Han L, Morales LC, Richards MR, Kitova EN, Sipione S, Klassen JS.

Anal Chem. 2017 Sep 5;89(17):9330-9338. doi: 10.1021/acs.analchem.7b02094. Epub 2017 Aug 17.

PMID:
28768095
30.

An Examination of Correlates for Adolescent Engagement in Nonsuicidal Self-Injury, Suicidal Self-Injury, and Substance Use.

Klassen JA, Hamza CA, Stewart SL.

J Res Adolesc. 2018 Jun;28(2):342-353. doi: 10.1111/jora.12333. Epub 2017 Jul 31.

PMID:
28758354
31.

High-Throughput Label- and Immobilization-Free Screening of Human Milk Oligosaccharides Against Lectins.

El-Hawiet A, Chen Y, Shams-Ud-Doha K, Kitova EN, St-Pierre Y, Klassen JS.

Anal Chem. 2017 Sep 5;89(17):8713-8722. doi: 10.1021/acs.analchem.7b00542. Epub 2017 Aug 16.

PMID:
28749685
32.

Refractory Longitudinally Extensive Transverse Myelitis Responsive to Cyclophosphamide.

Baxter LJ, Chen S, Couillard P, Scott JN, Doig CJ, Costello F, Girard LP, Klassen J, Burton JM.

Can J Neurol Sci. 2017 Nov;44(6):736-739. doi: 10.1017/cjn.2017.201. Epub 2017 Jul 20.

PMID:
28724464
33.

Venous Diversion Surgery Revisited: A Baffling Situation.

Klassen JR, Jassal DS, Memauri B, Kass M, Tam JW, Windram J, Ross D, Shaikh N.

Cureus. 2017 Jun 6;9(6):e1320. doi: 10.7759/cureus.1320.

34.

Delivering Transmembrane Peptide Complexes to the Gas Phase Using Nanodiscs and Electrospray Ionization.

Li J, Richards MR, Kitova EN, Klassen JS.

J Am Soc Mass Spectrom. 2017 Oct;28(10):2054-2065. doi: 10.1007/s13361-017-1735-7. Epub 2017 Jul 5.

PMID:
28681358
35.

Lentivector Iterations and Pre-Clinical Scale-Up/Toxicity Testing: Targeting Mobilized CD34+ Cells for Correction of Fabry Disease.

Huang J, Khan A, Au BC, Barber DL, López-Vásquez L, Prokopishyn NL, Boutin M, Rothe M, Rip JW, Abaoui M, Nagree MS, Dworski S, Schambach A, Keating A, West ML, Klassen J, Turner PV, Sirrs S, Rupar CA, Auray-Blais C, Foley R, Medin JA.

Mol Ther Methods Clin Dev. 2017 May 12;5:241-258. doi: 10.1016/j.omtm.2017.05.003. eCollection 2017 Jun 16.

36.

Isolation, Biosynthesis and Chemical Modifications of Rubterolones A-F: Rare Tropolone Alkaloids from Actinomadura sp. 5-2.

Guo H, Benndorf R, Leichnitz D, Klassen JL, Vollmers J, Görls H, Steinacker M, Weigel C, Dahse HM, Kaster AK, de Beer ZW, Poulsen M, Beemelmanns C.

Chemistry. 2017 Jul 12;23(39):9338-9345. doi: 10.1002/chem.201701005. Epub 2017 Jun 21.

PMID:
28463423
37.

Human Milk Oligosaccharide Specificities of Human Galectins. Comparison of Electrospray Ionization Mass Spectrometry and Glycan Microarray Screening Results.

Shams-Ud-Doha K, Kitova EN, Kitov PI, St-Pierre Y, Klassen JS.

Anal Chem. 2017 May 2;89(9):4914-4921. doi: 10.1021/acs.analchem.6b05169. Epub 2017 Apr 10.

PMID:
28345865
38.

Linear Peptides Are the Major Products of a Biosynthetic Pathway That Encodes for Cyclic Depsipeptides.

Wyche TP, Ruzzini AC, Beemelmanns C, Kim KH, Klassen JL, Cao S, Poulsen M, Bugni TS, Currie CR, Clardy J.

Org Lett. 2017 Apr 7;19(7):1772-1775. doi: 10.1021/acs.orglett.7b00545. Epub 2017 Mar 22.

39.

Optogenetic control with a photocleavable protein, PhoCl.

Zhang W, Lohman AW, Zhuravlova Y, Lu X, Wiens MD, Hoi H, Yaganoglu S, Mohr MA, Kitova EN, Klassen JS, Pantazis P, Thompson RJ, Campbell RE.

Nat Methods. 2017 Apr;14(4):391-394. doi: 10.1038/nmeth.4222. Epub 2017 Mar 13.

PMID:
28288123
40.

Macrotermycins A-D, Glycosylated Macrolactams from a Termite-Associated Amycolatopsis sp. M39.

Beemelmanns C, Ramadhar TR, Kim KH, Klassen JL, Cao S, Wyche TP, Hou Y, Poulsen M, Bugni TS, Currie CR, Clardy J.

Org Lett. 2017 Mar 3;19(5):1000-1003. doi: 10.1021/acs.orglett.6b03831. Epub 2017 Feb 16.

41.

TTP: One of the TMA's-How to sort it out.

Rock G, Clark W, Foley R, Huang S, Laroche V, Klassen J, Patriquin C, Pavenski K; CAG TTP Working Group Members.

Transfus Apher Sci. 2017 Feb;56(1):57-58. doi: 10.1016/j.transci.2016.12.020. Epub 2017 Jan 4. Review. No abstract available.

PMID:
28185827
42.

Quantum State Tomography via Reduced Density Matrices.

Xin T, Lu D, Klassen J, Yu N, Ji Z, Chen J, Ma X, Long G, Zeng B, Laflamme R.

Phys Rev Lett. 2017 Jan 13;118(2):020401. doi: 10.1103/PhysRevLett.118.020401. Epub 2017 Jan 9.

PMID:
28128623
43.

Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes.

Theis KR, Dheilly NM, Klassen JL, Brucker RM, Baines JF, Bosch TC, Cryan JF, Gilbert SF, Goodnight CJ, Lloyd EA, Sapp J, Vandenkoornhuyse P, Zilber-Rosenberg I, Rosenberg E, Bordenstein SR.

mSystems. 2016 Mar 29;1(2). pii: e00028-16. eCollection 2016 Mar-Apr.

44.

Can They Make It on Their Own? Hosts, Microbes, and the Holobiont Niche.

Kopac SM, Klassen JL.

Front Microbiol. 2016 Oct 21;7:1647. eCollection 2016.

45.

Draft Genome Sequence of Streptomyces sp. AVP053U2 Isolated from Styela clava, a Tunicate Collected in Long Island Sound.

deMayo JA, Maas KR, Klassen JL, Balunas MJ.

Genome Announc. 2016 Oct 13;4(5). pii: e00874-16. doi: 10.1128/genomeA.00874-16.

46.

Draft Genome Sequence of Streptomyces sp. Strain PTY087I2, Isolated from Styela canopus, a Panamanian Tunicate.

Gromek SM, Sung AA, Klassen JL, Balunas MJ.

Genome Announc. 2016 Sep 15;4(5). pii: e00856-16. doi: 10.1128/genomeA.00856-16.

47.

Detecting Protein-Glycolipid Interactions Using Glycomicelles and CaR-ESI-MS.

Han L, Kitova EN, Klassen JS.

J Am Soc Mass Spectrom. 2016 Nov;27(11):1878-1886. Epub 2016 Aug 22.

PMID:
27549393
48.

Characterizing the Size and Composition of Saposin A Lipoprotein Picodiscs.

Li J, Richards MR, Bagal D, Campuzano ID, Kitova EN, Xiong ZJ, Privé GG, Klassen JS.

Anal Chem. 2016 Oct 4;88(19):9524-9531. Epub 2016 Sep 13.

PMID:
27532319
49.

Screening Oligosaccharide Libraries against Lectins Using the Proxy Protein Electrospray Ionization Mass Spectrometry Assay.

Han L, Shams-Ud-Doha K, Kitova EN, Klassen JS.

Anal Chem. 2016 Aug 16;88(16):8224-31. doi: 10.1021/acs.analchem.6b02044. Epub 2016 Jul 29.

PMID:
27366913
50.

Structure and Stability of Carbohydrate-Lipid Interactions. Methylmannose Polysaccharide-Fatty Acid Complexes.

Liu L, Siuda I, Richards MR, Renaud J, Kitova EN, Mayer PM, Tieleman DP, Lowary TL, Klassen JS.

Chembiochem. 2016 Aug 17;17(16):1571-8. doi: 10.1002/cbic.201600123. Epub 2016 Jul 13.

PMID:
27253157

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