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Items: 32

1.

Niche partitioning of a pathogenic microbiome driven by chemical gradients.

Quinn RA, Comstock W, Zhang T, Morton JT, da Silva R, Tran A, Aksenov A, Nothias LF, Wangpraseurt D, Melnik AV, Ackermann G, Conrad D, Klapper I, Knight R, Dorrestein PC.

Sci Adv. 2018 Sep 26;4(9):eaau1908. doi: 10.1126/sciadv.aau1908. eCollection 2018 Sep.

2.

Mathematical modeling of dispersal phenomenon in biofilms.

D'Acunto B, Frunzo L, Klapper I, Mattei MR, Stoodley P.

Math Biosci. 2019 Jan;307:70-87. doi: 10.1016/j.mbs.2018.07.009. Epub 2018 Aug 1.

PMID:
30076852
3.

Hypoxia arising from concerted oxygen consumption by neutrophils and microorganisms in biofilms.

Wu Y, Klapper I, Stewart PS.

Pathog Dis. 2018 Jun 1;76(4). doi: 10.1093/femspd/fty043.

PMID:
29688319
4.

Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H; Isaac Newton Institute Fellows, Soyer OS.

ISME J. 2016 Nov;10(11):2557-2568. doi: 10.1038/ismej.2016.45. Epub 2016 Mar 29. Review.

5.

Diffusive transport through a model host-biofilm system.

Aristotelous AC, Klapper I, Grabovsky Y, Pabst B, Pitts B, Stewart PS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022703. Epub 2015 Aug 10.

6.

Estimation of a biofilm-specific reaction rate: kinetics of bacterial urea hydrolysis in a biofilm.

Connolly JM, Jackson B, Rothman AP, Klapper I, Gerlach R.

NPJ Biofilms Microbiomes. 2015 Sep 16;1:15014. doi: 10.1038/npjbiofilms.2015.14. eCollection 2015.

7.

The molecular dimension of microbial species: 2. Synechococcus strains representative of putative ecotypes inhabiting different depths in the Mushroom Spring microbial mat exhibit different adaptive and acclimative responses to light.

Nowack S, Olsen MT, Schaible GA, Becraft ED, Shen G, Klapper I, Bryant DA, Ward DM.

Front Microbiol. 2015 Jun 29;6:626. doi: 10.3389/fmicb.2015.00626. eCollection 2015.

8.

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms.

Kim YM, Nowack S, Olsen MT, Becraft ED, Wood JM, Thiel V, Klapper I, Kühl M, Fredrickson JK, Bryant DA, Ward DM, Metz TO.

Front Microbiol. 2015 Apr 17;6:209. doi: 10.3389/fmicb.2015.00209. eCollection 2015.

9.

Modeling multispecies biofilms including new bacterial species invasion.

D'Acunto B, Frunzo L, Klapper I, Mattei MR.

Math Biosci. 2015 Jan;259:20-6. doi: 10.1016/j.mbs.2014.10.009. Epub 2014 Nov 20.

PMID:
25447810
10.

General theory for integrated analysis of growth, gene, and protein expression in biofilms.

Zhang T, Pabst B, Klapper I, Stewart PS.

PLoS One. 2013 Dec 23;8(12):e83626. doi: 10.1371/journal.pone.0083626. eCollection 2013.

11.

Mighty small: Observing and modeling individual microbes becomes big science.

Kreft JU, Plugge CM, Grimm V, Prats C, Leveau JH, Banitz T, Baines S, Clark J, Ros A, Klapper I, Topping CJ, Field AJ, Schuler A, Litchman E, Hellweger FL.

Proc Natl Acad Sci U S A. 2013 Nov 5;110(45):18027-8. doi: 10.1073/pnas.1317472110. No abstract available.

12.

Productivity and equilibrium in simple biofilm models.

Klapper I.

Bull Math Biol. 2012 Dec;74(12):2917-34. doi: 10.1007/s11538-012-9791-4. Epub 2012 Nov 16.

PMID:
23161128
13.

An exclusion principle and the importance of mobility for a class of biofilm models.

Klapper I, Szomolay B.

Bull Math Biol. 2011 Sep;73(9):2213-30. doi: 10.1007/s11538-010-9621-5. Epub 2011 Jan 15.

PMID:
21240563
14.

Mathematical model of biofilm induced calcite precipitation.

Zhang T, Klapper I.

Water Sci Technol. 2010;61(11):2957-64. doi: 10.2166/wst.2010.064.

PMID:
20489270
15.

Measurements of accumulation and displacement at the single cell cluster level in Pseudomonas aeruginosa biofilms.

Klayman BJ, Klapper I, Stewart PS, Camper AK.

Environ Microbiol. 2008 Sep;10(9):2344-54. doi: 10.1111/j.1462-2920.2008.01660.x. Epub 2008 Jun 28.

PMID:
18557771
16.

Senescence can explain microbial persistence.

Klapper I, Gilbert P, Ayati BP, Dockery J, Stewart PS.

Microbiology. 2007 Nov;153(Pt 11):3623-30.

PMID:
17975070
17.
18.

Interaction between arthropod filiform hairs in a fluid environment.

Cummins B, Gedeon T, Klapper I, Cortez R.

J Theor Biol. 2007 Jul 21;247(2):266-80. Epub 2007 Feb 20.

19.

A multidimensional multispecies continuum model for heterogeneous biofilm development.

Alpkvist E, Klapper I.

Bull Math Biol. 2007 Feb;69(2):765-89. Epub 2007 Jan 9. Erratum in: Bull Math Biol. 2007 Oct;69(7):2445. Alpkvista, Erik [corrected to Alpkvist, Erik].

PMID:
17211734
20.

Role of cohesion in the material description of biofilms.

Klapper I, Dockery J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Sep;74(3 Pt 1):031902. Epub 2006 Sep 5.

PMID:
17025662
21.

Adaptive responses to antimicrobial agents in biofilms.

Szomolay B, Klapper I, Dockery J, Stewart PS.

Environ Microbiol. 2005 Aug;7(8):1186-91.

PMID:
16011755
22.

Commonality of elastic relaxation times in biofilms.

Shaw T, Winston M, Rupp CJ, Klapper I, Stoodley P.

Phys Rev Lett. 2004 Aug 27;93(9):098102. Epub 2004 Aug 24.

PMID:
15447143
23.
24.

Biofilm material properties as related to shear-induced deformation and detachment phenomena.

Stoodley P, Cargo R, Rupp CJ, Wilson S, Klapper I.

J Ind Microbiol Biotechnol. 2002 Dec;29(6):361-7.

PMID:
12483479
25.

Viscoelastic fluid description of bacterial biofilm material properties.

Klapper I, Rupp CJ, Cargo R, Purvedorj B, Stoodley P.

Biotechnol Bioeng. 2002 Nov 5;80(3):289-96.

PMID:
12226861
26.
27.

Generalized entropies in a turbulent dynamo simulation.

Brandenburg A, Klapper I I, Kurths J.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Nov;52(5):R4602-R4605. No abstract available.

PMID:
9964084
28.
29.

The 'knotting' problem in proteins. Loop penetration.

Klapper MH, Klapper IZ.

Biochim Biophys Acta. 1980 Nov 20;626(1):97-105.

PMID:
6906234
30.

Loop penetration in proteins: a not so knotty problem.

Klapper MH, Klapper IZ.

Biophys J. 1980 Oct;32(1):216-8. No abstract available.

31.

[Drug permeation through synthetic lipoid membranes. 8. Mathematical description of substance transport with constant concentration in compartment A].

Fürst W, Falk M, Neubert R, Wiessner U, Klapper I.

Pharmazie. 1976 Aug;31(8):557-9. German. No abstract available.

PMID:
11511
32.

[Drug permeation through synthetic lipoid membranes. 6. The influence of volume on the permeation equation].

Fürst W, Falk M, Neubert R, Klapper I.

Pharmazie. 1975 Sep;30(9):614-5. German. No abstract available.

PMID:
1187747

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