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Get Cultured: Eat Bacteria.

Klaenhammer TR.

Annu Rev Food Sci Technol. 2019 Mar 25;10:1-20. doi: 10.1146/annurev-food-032818-121826.


Deletion-based escape of CRISPR-Cas9 targeting in Lactobacillus gasseri.

Stout EA, Sanozky-Dawes R, Goh YJ, Crawley AB, Klaenhammer TR, Barrangou R.

Microbiology. 2018 Sep;164(9):1098-1111. doi: 10.1099/mic.0.000689. Epub 2018 Jul 19.


Phenotypic and genotypic diversity of Lactobacillus buchneri strains isolated from spoiled, fermented cucumber.

Daughtry KV, Johanningsmeier SD, Sanozky-Dawes R, Klaenhammer TR, Barrangou R.

Int J Food Microbiol. 2018 Sep 2;280:46-56. doi: 10.1016/j.ijfoodmicro.2018.04.044. Epub 2018 May 9.


Nod2 is required for antigen-specific humoral responses against antigens orally delivered using a recombinant Lactobacillus vaccine platform.

Bumgardner SA, Zhang L, LaVoy AS, Andre B, Frank CB, Kajikawa A, Klaenhammer TR, Dean GA.

PLoS One. 2018 May 7;13(5):e0196950. doi: 10.1371/journal.pone.0196950. eCollection 2018.


Lactobacillus acidophilus Metabolizes Dietary Plant Glucosides and Externalizes Their Bioactive Phytochemicals.

Theilmann MC, Goh YJ, Nielsen KF, Klaenhammer TR, Barrangou R, Abou Hachem M.

mBio. 2017 Nov 21;8(6). pii: e01421-17. doi: 10.1128/mBio.01421-17.


Shared mechanisms among probiotic taxa: implications for general probiotic claims.

Sanders ME, Benson A, Lebeer S, Merenstein DJ, Klaenhammer TR.

Curr Opin Biotechnol. 2018 Feb;49:207-216. doi: 10.1016/j.copbio.2017.09.007. Epub 2017 Nov 10. Review.


The S-layer Associated Serine Protease Homolog PrtX Impacts Cell Surface-Mediated Microbe-Host Interactions of Lactobacillus acidophilus NCFM.

Johnson BR, O'Flaherty S, Goh YJ, Carroll I, Barrangou R, Klaenhammer TR.

Front Microbiol. 2017 Jun 30;8:1185. doi: 10.3389/fmicb.2017.01185. eCollection 2017.


Deletion of Lipoteichoic Acid Synthase Impacts Expression of Genes Encoding Cell Surface Proteins in Lactobacillus acidophilus.

Selle K, Goh YJ, Johnson BR, O'Flaherty S, Andersen JM, Barrangou R, Klaenhammer TR.

Front Microbiol. 2017 Apr 11;8:553. doi: 10.3389/fmicb.2017.00553. eCollection 2017.


An Extracellular Cell-Attached Pullulanase Confers Branched α-Glucan Utilization in Human Gut Lactobacillus acidophilus.

Møller MS, Goh YJ, Rasmussen KB, Cypryk W, Celebioglu HU, Klaenhammer TR, Svensson B, Abou Hachem M.

Appl Environ Microbiol. 2017 May 31;83(12). pii: e00402-17. doi: 10.1128/AEM.00402-17. Print 2017 Jun 15.


Impact of short-chain galactooligosaccharides on the gut microbiome of lactose-intolerant individuals.

Azcarate-Peril MA, Ritter AJ, Savaiano D, Monteagudo-Mera A, Anderson C, Magness ST, Klaenhammer TR.

Proc Natl Acad Sci U S A. 2017 Jan 17;114(3):E367-E375. doi: 10.1073/pnas.1606722113. Epub 2017 Jan 3.


Stuck in the Middle: Fibronectin-Binding Proteins in Gram-Positive Bacteria.

Hymes JP, Klaenhammer TR.

Front Microbiol. 2016 Sep 22;7:1504. eCollection 2016. Review.


AcmB Is an S-Layer-Associated β-N-Acetylglucosaminidase and Functional Autolysin in Lactobacillus acidophilus NCFM.

Johnson BR, Klaenhammer TR.

Appl Environ Microbiol. 2016 Aug 30;82(18):5687-97. doi: 10.1128/AEM.02025-16. Print 2016 Sep 15.


Differential proteome and cellular adhesion analyses of the probiotic bacterium Lactobacillus acidophilus NCFM grown on raffinose - an emerging prebiotic.

Celebioglu HU, Ejby M, Majumder A, Købler C, Goh YJ, Thorsen K, Schmidt B, O'Flaherty S, Abou Hachem M, Lahtinen SJ, Jacobsen S, Klaenhammer TR, Brix S, Mølhave K, Svensson B.

Proteomics. 2016 May;16(9):1361-75. doi: 10.1002/pmic.201500212. Epub 2016 Apr 13.


Probiotic nomenclature matters.

Hill C, Scott K, Klaenhammer TR, Quigley E, Sanders ME.

Gut Microbes. 2016;7(1):1-2. doi: 10.1080/19490976.2015.1127484. No abstract available.


Functional Analysis of an S-Layer-Associated Fibronectin-Binding Protein in Lactobacillus acidophilus NCFM.

Hymes JP, Johnson BR, Barrangou R, Klaenhammer TR.

Appl Environ Microbiol. 2016 Apr 18;82(9):2676-2685. doi: 10.1128/AEM.00024-16. Print 2016 May.


Intracellular and Extracellular Expression of Bacillus thuringiensis Crystal Protein Cry5B in Lactococcus lactis for Use as an Anthelminthic.

Durmaz E, Hu Y, Aroian RV, Klaenhammer TR.

Appl Environ Microbiol. 2015 Dec 18;82(4):1286-94. doi: 10.1128/AEM.02365-15. Print 2016 Feb 15.


Mucosal Immunogenicity of Genetically Modified Lactobacillus acidophilus Expressing an HIV-1 Epitope within the Surface Layer Protein.

Kajikawa A, Zhang L, LaVoy A, Bumgardner S, Klaenhammer TR, Dean GA.

PLoS One. 2015 Oct 28;10(10):e0141713. doi: 10.1371/journal.pone.0141713. eCollection 2015.


Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli.

Johnson BR, Hymes J, Sanozky-Dawes R, Henriksen ED, Barrangou R, Klaenhammer TR.

Appl Environ Microbiol. 2015 Oct 16;82(1):134-45. doi: 10.1128/AEM.01968-15. Print 2016 Jan 1.


Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.

Sun Z, Harris HM, McCann A, Guo C, Argimón S, Zhang W, Yang X, Jeffery IB, Cooney JC, Kagawa TF, Liu W, Song Y, Salvetti E, Wrobel A, Rasinkangas P, Parkhill J, Rea MC, O'Sullivan O, Ritari J, Douillard FP, Paul Ross R, Yang R, Briner AE, Felis GE, de Vos WM, Barrangou R, Klaenhammer TR, Caufield PW, Cui Y, Zhang H, O'Toole PW.

Nat Commun. 2015 Sep 29;6:8322. doi: 10.1038/ncomms9322.


CRISPR-based screening of genomic island excision events in bacteria.

Selle K, Klaenhammer TR, Barrangou R.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):8076-81. doi: 10.1073/pnas.1508525112. Epub 2015 Jun 15.


SIGNR3-dependent immune regulation by Lactobacillus acidophilus surface layer protein A in colitis.

Lightfoot YL, Selle K, Yang T, Goh YJ, Sahay B, Zadeh M, Owen JL, Colliou N, Li E, Johannssen T, Lepenies B, Klaenhammer TR, Mohamadzadeh M.

EMBO J. 2015 Apr 1;34(7):881-95. doi: 10.15252/embj.201490296. Epub 2015 Feb 9.


Genetic mechanisms of prebiotic oligosaccharide metabolism in probiotic microbes.

Goh YJ, Klaenhammer TR.

Annu Rev Food Sci Technol. 2015;6:137-56. doi: 10.1146/annurev-food-022814-015706. Epub 2014 Dec 19. Review.


Sortase-deficient lactobacilli: effect on immunomodulation and gut retention.

Call EK, Goh YJ, Selle K, Klaenhammer TR, O'Flaherty S.

Microbiology. 2015 Feb;161(Pt 2):311-321. doi: 10.1099/mic.0.000007. Epub 2014 Dec 12.


Microbiology: Bacteria get vaccinated.

Barrangou R, Klaenhammer TR.

Nature. 2014 Sep 11;513(7517):175-6. doi: 10.1038/513175a. No abstract available.


Development of an integration mutagenesis system in Lactobacillus gasseri.

Selle K, Goh YJ, O'Flaherty S, Klaenhammer TR.

Gut Microbes. 2014 May-Jun;5(3):326-32. doi: 10.4161/gmic.29101. Epub 2014 May 16.


Impact of genomics on the field of probiotic research: historical perspectives to modern paradigms.

Johnson BR, Klaenhammer TR.

Antonie Van Leeuwenhoek. 2014 Jul;106(1):141-56. doi: 10.1007/s10482-014-0171-y. Epub 2014 Apr 20. Review.


Spontaneously induced prophages in Lactobacillus gasseri contribute to horizontal gene transfer.

Baugher JL, Durmaz E, Klaenhammer TR.

Appl Environ Microbiol. 2014 Jun;80(11):3508-17. doi: 10.1128/AEM.04092-13. Epub 2014 Mar 28.


Effects of genetic, processing, or product formulation changes on efficacy and safety of probiotics.

Sanders ME, Klaenhammer TR, Ouwehand AC, Pot B, Johansen E, Heimbach JT, Marco ML, Tennilä J, Ross RP, Franz C, Pagé N, Pridmore RD, Leyer G, Salminen S, Charbonneau D, Call E, Lenoir-Wijnkoop I.

Ann N Y Acad Sci. 2014 Feb;1309:1-18. doi: 10.1111/nyas.12363. Review.


Improving lactose digestion and symptoms of lactose intolerance with a novel galacto-oligosaccharide (RP-G28): a randomized, double-blind clinical trial.

Savaiano DA, Ritter AJ, Klaenhammer TR, James GM, Longcore AT, Chandler JR, Walker WA, Foyt HL.

Nutr J. 2013 Dec 13;12:160. doi: 10.1186/1475-2891-12-160.


Probiotics, prebiotics, and the host microbiome: the science of translation.

Petschow B, Doré J, Hibberd P, Dinan T, Reid G, Blaser M, Cani PD, Degnan FH, Foster J, Gibson G, Hutton J, Klaenhammer TR, Ley R, Nieuwdorp M, Pot B, Relman D, Serazin A, Sanders ME.

Ann N Y Acad Sci. 2013 Dec;1306:1-17. doi: 10.1111/nyas.12303. Epub 2013 Nov 22. Review.


A functional glycogen biosynthesis pathway in Lactobacillus acidophilus: expression and analysis of the glg operon.

Goh YJ, Klaenhammer TR.

Mol Microbiol. 2013 Sep;89(6):1187-200. doi: 10.1111/mmi.12338. Epub 2013 Aug 16.


Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactis Bl-04.

Andersen JM, Barrangou R, Abou Hachem M, Lahtinen SJ, Goh YJ, Svensson B, Klaenhammer TR.

BMC Genomics. 2013 May 10;14:312. doi: 10.1186/1471-2164-14-312.


Relevance and application of sortase and sortase-dependent proteins in lactic acid bacteria.

Call EK, Klaenhammer TR.

Front Microbiol. 2013 Apr 8;4:73. doi: 10.3389/fmicb.2013.00073. eCollection 2013.


Genomic and phenotypic evidence for probiotic influences of Lactobacillus gasseri on human health.

Selle K, Klaenhammer TR.

FEMS Microbiol Rev. 2013 Nov;37(6):915-35. doi: 10.1111/1574-6976.12021. Epub 2013 Apr 12. Review.


New insights into probiotic mechanisms: a harvest from functional and metagenomic studies.

Bienenstock J, Gibson G, Klaenhammer TR, Walker WA, Neish AS.

Gut Microbes. 2013 Mar-Apr;4(2):94-100. doi: 10.4161/gmic.23283. Epub 2012 Dec 18. Review.


Characterization of the fecal microbiota using high-throughput sequencing reveals a stable microbial community during storage.

Carroll IM, Ringel-Kulka T, Siddle JP, Klaenhammer TR, Ringel Y.

PLoS One. 2012;7(10):e46953. doi: 10.1371/journal.pone.0046953. Epub 2012 Oct 5.


Transcriptional analysis of prebiotic uptake and catabolism by Lactobacillus acidophilus NCFM.

Andersen JM, Barrangou R, Hachem MA, Lahtinen SJ, Goh YJ, Svensson B, Klaenhammer TR.

PLoS One. 2012;7(9):e44409. doi: 10.1371/journal.pone.0044409. Epub 2012 Sep 19.


The impact of probiotics and prebiotics on the immune system.

Klaenhammer TR, Kleerebezem M, Kopp MV, Rescigno M.

Nat Rev Immunol. 2012 Oct;12(10):728-34. doi: 10.1038/nri3312. Review.


Lactic acid production by Streptococcus thermophilus alters Clostridium difficile infection and in vitro Toxin A production.

Kolling GL, Wu M, Warren CA, Durmaz E, Klaenhammer TR, Timko MP, Guerrant RL.

Gut Microbes. 2012 Nov-Dec;3(6):523-9. doi: 10.4161/gmic.21757. Epub 2012 Aug 16. Erratum in: Gut Microbes. 2013 Mar-Apr;4(2):175. Timko, Michael P [added].


Abating colon cancer polyposis by Lactobacillus acidophilus deficient in lipoteichoic acid.

Khazaie K, Zadeh M, Khan MW, Bere P, Gounari F, Dennis K, Blatner NR, Owen JL, Klaenhammer TR, Mohamadzadeh M.

Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):10462-7. doi: 10.1073/pnas.1207230109. Epub 2012 Jun 11.


Influence of exposure time on gene expression by human intestinal epithelial cells exposed to Lactobacillus acidophilus.

O'Flaherty S, Klaenhammer TR.

Appl Environ Microbiol. 2012 Jul;78(14):5028-32. doi: 10.1128/AEM.00504-12. Epub 2012 May 4.


The impact of omic technologies on the study of food microbes.

O'Flaherty S, Klaenhammer TR.

Annu Rev Food Sci Technol. 2011;2:353-71. doi: 10.1146/annurev-food-030810-110338. Review.


Transcriptional and functional analysis of galactooligosaccharide uptake by lacS in Lactobacillus acidophilus.

Andersen JM, Barrangou R, Abou Hachem M, Lahtinen S, Goh YJ, Svensson B, Klaenhammer TR.

Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):17785-90. doi: 10.1073/pnas.1114152108. Epub 2011 Oct 17.


Invited review: Application of omics tools to understanding probiotic functionality.

Baugher JL, Klaenhammer TR.

J Dairy Sci. 2011 Oct;94(10):4753-65. doi: 10.3168/jds.2011-4384. Review.


Assessment of Lactobacillus gasseri as a candidate oral vaccine vector.

Stoeker L, Nordone S, Gunderson S, Zhang L, Kajikawa A, LaVoy A, Miller M, Klaenhammer TR, Dean GA.

Clin Vaccine Immunol. 2011 Nov;18(11):1834-44. doi: 10.1128/CVI.05277-11. Epub 2011 Sep 7.


Directed chromosomal integration and expression of the reporter gene gusA3 in Lactobacillus acidophilus NCFM.

Douglas GL, Klaenhammer TR.

Appl Environ Microbiol. 2011 Oct;77(20):7365-71. doi: 10.1128/AEM.06028-11. Epub 2011 Aug 26.


Integrative food grade expression system for lactic acid bacteria.

Douglas GL, Goh YJ, Klaenhammer TR.

Methods Mol Biol. 2011;765:373-87. doi: 10.1007/978-1-61779-197-0_22.


Dissimilar properties of two recombinant Lactobacillus acidophilus strains displaying Salmonella FliC with different anchoring motifs.

Kajikawa A, Nordone SK, Zhang L, Stoeker LL, LaVoy AS, Klaenhammer TR, Dean GA.

Appl Environ Microbiol. 2011 Sep;77(18):6587-96. doi: 10.1128/AEM.05153-11. Epub 2011 Jul 22.

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