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Items: 30

1.

Genomic selection of juvenile height across a single-generational gap in Douglas-fir.

Thistlethwaite FR, Ratcliffe B, Klápště J, Porth I, Chen C, Stoehr MU, El-Kassaby YA.

Heredity (Edinb). 2019 Jan 10. doi: 10.1038/s41437-018-0172-0. [Epub ahead of print]

PMID:
30631145
2.

Author Correction: Sexual homomorphism in dioecious trees: extensive tests fail to detect sexual dimorphism in Populus.

McKown AD, Klápště J, Guy RD, Soolanayakanahally RY, La Mantia J, Porth I, Skyba O, Unda F, Douglas CJ, El-Kassaby YA, Hamelin RC, Mansfield SD, Cronk QCB.

Sci Rep. 2018 Nov 22;8(1):17410. doi: 10.1038/s41598-018-35443-y.

3.

Correction to: Efficiency of genomic prediction across two Eucalyptus nitens seed orchards with different selection histories.

Suontama M, Klápště J, Telfer E, Graham N, Stovold T, Low C, McKinley R, Dungey H.

Heredity (Edinb). 2019 Mar;122(3):380. doi: 10.1038/s41437-018-0159-x.

PMID:
30349144
4.

Effect of Hidden Relatedness on Single-Step Genetic Evaluation in an Advanced Open-Pollinated Breeding Program.

Klápšte J, Suontama M, Dungey HS, Telfer EJ, Graham NJ, Low CB, Stovold GT.

J Hered. 2018 Oct 31;109(7):802-810. doi: 10.1093/jhered/esy051.

5.

Efficiency of genomic prediction across two Eucalyptus nitens seed orchards with different selection histories.

Suontama M, Klápště J, Telfer E, Graham N, Stovold T, Low C, McKinley R, Dungey H.

Heredity (Edinb). 2019 Mar;122(3):370-379. doi: 10.1038/s41437-018-0119-5. Epub 2018 Jul 6. Erratum in: Heredity (Edinb). 2018 Oct 22;:.

PMID:
29980794
6.

Ecological genomics of variation in bud-break phenology and mechanisms of response to climate warming in Populus trichocarpa.

McKown AD, Klápště J, Guy RD, El-Kassaby YA, Mansfield SD.

New Phytol. 2018 Oct;220(1):300-316. doi: 10.1111/nph.15273. Epub 2018 Jul 2.

PMID:
29963703
7.

Genomic-based multiple-trait evaluation in Eucalyptus grandis using dominant DArT markers.

Cappa EP, El-Kassaby YA, Muñoz F, Garcia MN, Villalba PV, Klápště J, Marcucci Poltri SN.

Plant Sci. 2018 Jun;271:27-33. doi: 10.1016/j.plantsci.2018.03.014. Epub 2018 Mar 14.

PMID:
29650154
8.

Adaptive differentiation of Festuca rubra along a climate gradient revealed by molecular markers and quantitative traits.

Stojanova B, Šurinová M, Klápště J, Koláříková V, Hadincová V, Münzbergová Z.

PLoS One. 2018 Apr 4;13(4):e0194670. doi: 10.1371/journal.pone.0194670. eCollection 2018.

9.

Multienvironment genomic variance decomposition analysis of open-pollinated Interior spruce (Picea glauca x engelmannii).

El-Dien OG, Ratcliffe B, Klápště J, Porth I, Chen C, El-Kassaby YA.

Mol Breed. 2018;38(3):26. doi: 10.1007/s11032-018-0784-3. Epub 2018 Feb 15.

10.

Genomic prediction accuracies in space and time for height and wood density of Douglas-fir using exome capture as the genotyping platform.

Thistlethwaite FR, Ratcliffe B, Klápště J, Porth I, Chen C, Stoehr MU, El-Kassaby YA.

BMC Genomics. 2017 Dec 2;18(1):930. doi: 10.1186/s12864-017-4258-5.

11.

Exploration of genetic architecture through sib-ship reconstruction in advanced breeding population of Eucalyptus nitens.

Klápště J, Suontama M, Telfer E, Graham N, Low C, Stovold T, McKinley R, Dungey H.

PLoS One. 2017 Sep 22;12(9):e0185137. doi: 10.1371/journal.pone.0185137. eCollection 2017.

12.

Practical application of genomic selection in a doubled-haploid winter wheat breeding program.

Song J, Carver BF, Powers C, Yan L, Klápště J, El-Kassaby YA, Chen C.

Mol Breed. 2017;37(10):117. doi: 10.1007/s11032-017-0715-8. Epub 2017 Sep 3.

13.

Sexual homomorphism in dioecious trees: extensive tests fail to detect sexual dimorphism in Populus .

McKown AD, Klápště J, Guy RD, Soolanayakanahally RY, La Mantia J, Porth I, Skyba O, Unda F, Douglas CJ, El-Kassaby YA, Hamelin RC, Mansfield SD, Cronk QCB.

Sci Rep. 2017 May 12;7(1):1831. doi: 10.1038/s41598-017-01893-z. Erratum in: Sci Rep. 2018 Nov 22;8(1):17410.

14.

Single-Step BLUP with Varying Genotyping Effort in Open-Pollinated Picea glauca.

Ratcliffe B, El-Dien OG, Cappa EP, Porth I, Klápště J, Chen C, El-Kassaby YA.

G3 (Bethesda). 2017 Mar 10;7(3):935-942. doi: 10.1534/g3.116.037895.

15.

Evolutionary potential in the Alpine: trait heritabilities and performance variation of the dwarf willow Salix herbacea from different elevations and microhabitats.

Sedlacek J, Cortés AJ, Wheeler J, Bossdorf O, Hoch G, Klápště J, Lexer C, Rixen C, Wipf S, Karrenberg S, van Kleunen M.

Ecol Evol. 2016 May 12;6(12):3940-52. doi: 10.1002/ece3.2171. eCollection 2016 Jun.

16.

Implementation of the Realized Genomic Relationship Matrix to Open-Pollinated White Spruce Family Testing for Disentangling Additive from Nonadditive Genetic Effects.

Gamal El-Dien O, Ratcliffe B, Klápště J, Porth I, Chen C, El-Kassaby YA.

G3 (Bethesda). 2016 Jan 22;6(3):743-53. doi: 10.1534/g3.115.025957.

17.

Evolutionary Quantitative Genomics of Populus trichocarpa.

Porth I, Klápště J, McKown AD, La Mantia J, Guy RD, Ingvarsson PK, Hamelin R, Mansfield SD, Ehlting J, Douglas CJ, El-Kassaby YA.

PLoS One. 2015 Nov 23;10(11):e0142864. doi: 10.1371/journal.pone.0142864. eCollection 2015.

18.

A comparison of genomic selection models across time in interior spruce (Picea engelmannii × glauca) using unordered SNP imputation methods.

Ratcliffe B, El-Dien OG, Klápště J, Porth I, Chen C, Jaquish B, El-Kassaby YA.

Heredity (Edinb). 2015 Dec;115(6):547-55. doi: 10.1038/hdy.2015.57. Epub 2015 Jul 1.

19.

Prediction accuracies for growth and wood attributes of interior spruce in space using genotyping-by-sequencing.

Gamal El-Dien O, Ratcliffe B, Klápště J, Chen C, Porth I, El-Kassaby YA.

BMC Genomics. 2015 May 9;16:370. doi: 10.1186/s12864-015-1597-y.

20.

High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus.

Muchero W, Guo J, DiFazio SP, Chen JG, Ranjan P, Slavov GT, Gunter LE, Jawdy S, Bryan AC, Sykes R, Ziebell A, Klápště J, Porth I, Skyba O, Unda F, El-Kassaby YA, Douglas CJ, Mansfield SD, Martin J, Schackwitz W, Evans LM, Czarnecki O, Tuskan GA.

BMC Genomics. 2015 Jan 23;16:24. doi: 10.1186/s12864-015-1215-z.

21.

Association genetics, geography and ecophysiology link stomatal patterning in Populus trichocarpa with carbon gain and disease resistance trade-offs.

McKown AD, Guy RD, Quamme L, Klápště J, La Mantia J, Constabel CP, El-Kassaby YA, Hamelin RC, Zifkin M, Azam MS.

Mol Ecol. 2014 Dec;23(23):5771-90. doi: 10.1111/mec.12969. Epub 2014 Nov 8.

PMID:
25319679
22.

Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa.

McKown AD, Klápště J, Guy RD, Geraldes A, Porth I, Hannemann J, Friedmann M, Muchero W, Tuskan GA, Ehlting J, Cronk QC, El-Kassaby YA, Mansfield SD, Douglas CJ.

New Phytol. 2014 Jul;203(2):535-53. doi: 10.1111/nph.12815. Epub 2014 Apr 22.

23.

Geographical and environmental gradients shape phenotypic trait variation and genetic structure in Populus trichocarpa.

McKown AD, Guy RD, Klápště J, Geraldes A, Friedmann M, Cronk QC, El-Kassaby YA, Mansfield SD, Douglas CJ.

New Phytol. 2014 Mar;201(4):1263-76. doi: 10.1111/nph.12601. Epub 2013 Nov 25.

24.

Extensive functional pleiotropy of REVOLUTA substantiated through forward genetics.

Porth I, Klápste J, McKown AD, La Mantia J, Hamelin RC, Skyba O, Unda F, Friedmann MC, Cronk QC, Ehlting J, Guy RD, Mansfield SD, El-Kassaby YA, Douglas CJ.

Plant Physiol. 2014 Feb;164(2):548-54. doi: 10.1104/pp.113.228783. Epub 2013 Dec 5.

25.

Association analysis identifies Melampsora ×columbiana poplar leaf rust resistance SNPs.

La Mantia J, Klápště J, El-Kassaby YA, Azam S, Guy RD, Douglas CJ, Mansfield SD, Hamelin R.

PLoS One. 2013 Nov 13;8(11):e78423. doi: 10.1371/journal.pone.0078423. eCollection 2013.

26.

Genome-wide association mapping for wood characteristics in Populus identifies an array of candidate single nucleotide polymorphisms.

Porth I, Klapšte J, Skyba O, Hannemann J, McKown AD, Guy RD, DiFazio SP, Muchero W, Ranjan P, Tuskan GA, Friedmann MC, Ehlting J, Cronk QC, El-Kassaby YA, Douglas CJ, Mansfield SD.

New Phytol. 2013 Nov;200(3):710-26. doi: 10.1111/nph.12422. Epub 2013 Jul 26.

27.

Network analysis reveals the relationship among wood properties, gene expression levels and genotypes of natural Populus trichocarpa accessions.

Porth I, Klápště J, Skyba O, Friedmann MC, Hannemann J, Ehlting J, El-Kassaby YA, Mansfield SD, Douglas CJ.

New Phytol. 2013 Nov;200(3):727-42. doi: 10.1111/nph.12419. Epub 2013 Jul 29.

28.

A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species.

Geraldes A, Difazio SP, Slavov GT, Ranjan P, Muchero W, Hannemann J, Gunter LE, Wymore AM, Grassa CJ, Farzaneh N, Porth I, McKown AD, Skyba O, Li E, Fujita M, Klápště J, Martin J, Schackwitz W, Pennacchio C, Rokhsar D, Friedmann MC, Wasteneys GO, Guy RD, El-Kassaby YA, Mansfield SD, Cronk QC, Ehlting J, Douglas CJ, Tuskan GA.

Mol Ecol Resour. 2013 Mar;13(2):306-23. doi: 10.1111/1755-0998.12056. Epub 2013 Jan 11.

PMID:
23311503
29.

Populus trichocarpa cell wall chemistry and ultrastructure trait variation, genetic control and genetic correlations.

Porth I, Klápště J, Skyba O, Lai BS, Geraldes A, Muchero W, Tuskan GA, Douglas CJ, El-Kassaby YA, Mansfield SD.

New Phytol. 2013 Feb;197(3):777-90. doi: 10.1111/nph.12014. Epub 2012 Dec 20.

30.

Breeding without breeding: is a complete pedigree necessary for efficient breeding?

El-Kassaby YA, Cappa EP, Liewlaksaneeyanawin C, Klápště J, Lstibůrek M.

PLoS One. 2011;6(10):e25737. doi: 10.1371/journal.pone.0025737. Epub 2011 Oct 3.

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