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Items: 1 to 50 of 69

1.

Monoallelic, antisense and total RNA transcription in an in vitro neural differentiation system based on F1 hybrid mice.

Kondo S, Kato H, Suzuki Y, Takada T, Eitoku M, Shiroishi T, Suganuma N, Sugano S, Kiyosawa H.

J Cell Sci. 2019 Sep 9;132(17). pii: jcs228973. doi: 10.1242/jcs.228973.

PMID:
31409693
2.

Occupation exposed to road-traffic emissions and respiratory health among Congolese transit workers, particularly bus conductors, in Kinshasa: a cross-sectional study.

Mbelambela EP, Hirota R, Eitoku M, Muchanga SMJ, Kiyosawa H, Yasumitsu-Lovell K, Lawanga OL, Suganuma N.

Environ Health Prev Med. 2017 Mar 20;22(1):11. doi: 10.1186/s12199-017-0608-9.

3.

Markers associated with neuron-specific Ube3a imprinting during neuronal differentiation of mouse embryonic stem cells.

Eitoku M, Kato H, Suganuma N, Kiyosawa H.

Cytotechnology. 2018 Feb;70(1):45-53. doi: 10.1007/s10616-017-0126-z. Epub 2017 Aug 5.

4.

Fibrotic gene expression coexists with alveolar proteinosis in early indium lung.

Noguchi S, Eitoku M, Kiyosawa H, Suganuma N.

Inhal Toxicol. 2016 Aug;28(9):421-8. doi: 10.1080/08958378.2016.1193573.

PMID:
27308969
5.

Comparison of two types of non-adherent plate for neuronal differentiation of mouse embryonic stem cells.

Eitoku M, Suganuma N, Kiyosawa H.

Cytotechnology. 2016 Dec;68(6):2761-2768. Epub 2016 Apr 8.

6.

Sequence and structure analysis of a mirror tRNA located upstream of the cytochrome oxidase I mRNA in mouse mitochondria.

Okui S, Ushida C, Kiyosawa H, Kawai G.

J Biochem. 2016 Mar;159(3):341-50. doi: 10.1093/jb/mvv106. Epub 2015 Oct 31.

PMID:
26519737
7.

Regulation of Gene Expression by Sodium Valproate in Epithelial-to-Mesenchymal Transition.

Noguchi S, Eitoku M, Moriya S, Kondo S, Kiyosawa H, Watanabe T, Suganuma N.

Lung. 2015 Oct;193(5):691-700. doi: 10.1007/s00408-015-9776-9. Epub 2015 Aug 19.

PMID:
26286207
8.

Secondary structure-based analysis of mouse brain small RNA sequences obtained by using next-generation sequencing.

Kiyosawa H, Okumura A, Okui S, Ushida C, Kawai G.

Genomics. 2015 Aug;106(2):122-8. doi: 10.1016/j.ygeno.2015.05.003. Epub 2015 May 20.

9.

Fundamental study of detection of muscle hypertrophy-oriented gene doping by myostatin knock down using RNA interference.

Takemasa T, Yakushiji N, Kikuchi DM, Deocaris C, Widodo, Machida M, Kiyosawa H.

J Sports Sci Med. 2012 Jun 1;11(2):294-303. eCollection 2012.

10.

Genome-wide impact of endogenous antisense transcripts in eukaryotes.

Numata K, Kiyosawa H.

Front Biosci (Landmark Ed). 2012 Jan 1;17:300-15. Review.

PMID:
22201745
11.

ES cell differentiation system recapitulates the establishment of imprinted gene expression in a cell-type-specific manner.

Kohama C, Kato H, Numata K, Hirose M, Takemasa T, Ogura A, Kiyosawa H.

Hum Mol Genet. 2012 Mar 15;21(6):1391-401. doi: 10.1093/hmg/ddr577. Epub 2011 Dec 9.

PMID:
22156770
12.

Reduction of ribosome biogenesis with activation of the mTOR pathway in denervated atrophic muscle.

Machida M, Takeda K, Yokono H, Ikemune S, Taniguchi Y, Kiyosawa H, Takemasa T.

J Cell Physiol. 2012 Apr;227(4):1569-76. doi: 10.1002/jcp.22871.

PMID:
21678406
13.

Comprehensive expressional analyses of antisense transcripts in colon cancer tissues using artificial antisense probes.

Saito R, Kohno K, Okada Y, Osada Y, Numata K, Kohama C, Watanabe K, Nakaoka H, Yamamoto N, Kanai A, Yasue H, Murata S, Abe K, Tomita M, Ohkohchi N, Kiyosawa H.

BMC Med Genomics. 2011 May 16;4:42. doi: 10.1186/1755-8794-4-42.

14.

Highly parallel SNP genotyping reveals high-resolution landscape of mono-allelic Ube3a expression associated with locus-wide antisense transcription.

Numata K, Kohama C, Abe K, Kiyosawa H.

Nucleic Acids Res. 2011 Apr;39(7):2649-57. doi: 10.1093/nar/gkq1201. Epub 2010 Dec 3.

15.

Genome-wide analysis of expression modes and DNA methylation status at sense-antisense transcript loci in mouse.

Watanabe Y, Numata K, Murata S, Osada Y, Saito R, Nakaoka H, Yamamoto N, Watanabe K, Kato H, Abe K, Kiyosawa H.

Genomics. 2010 Dec;96(6):333-41. doi: 10.1016/j.ygeno.2010.08.007. Epub 2010 Aug 22.

16.

Existence of Pink1 antisense RNAs in mouse and their localization.

Chiba M, Kiyosawa H, Hiraiwa N, Ohkohchi N, Yasue H.

Cytogenet Genome Res. 2009;126(3):259-70. doi: 10.1159/000251963. Epub 2010 Jan 6.

PMID:
20068297
17.

Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes.

Numata K, Osada Y, Okada Y, Saito R, Hiraiwa N, Nakaoka H, Yamamoto N, Watanabe K, Okubo K, Kohama C, Kanai A, Abe K, Kiyosawa H.

BMC Genomics. 2009 Aug 22;10:392. doi: 10.1186/1471-2164-10-392.

18.

Localization of sense and antisense transcripts of Prdx2 gene in mouse tissues.

Chiba M, Kubo M, Miura T, Sato T, Rezaeian AH, Kiyosawa H, Ohkohchi N, Yasue H.

Cytogenet Genome Res. 2008;121(3-4):222-31. doi: 10.1159/000138889. Epub 2008 Aug 28.

PMID:
18758163
19.

Comparative expression analysis uncovers novel features of endogenous antisense transcription.

Okada Y, Tashiro C, Numata K, Watanabe K, Nakaoka H, Yamamoto N, Okubo K, Ikeda R, Saito R, Kanai A, Abe K, Tomita M, Kiyosawa H.

Hum Mol Genet. 2008 Jun 1;17(11):1631-40. doi: 10.1093/hmg/ddn051. Epub 2008 Feb 18.

PMID:
18283053
20.

[Mouse natural antisense RNA].

Kiyosawa H.

Tanpakushitsu Kakusan Koso. 2007 May;52(5):441-8. Review. Japanese. No abstract available.

PMID:
17491325
21.

Comparative analysis of cis-encoded antisense RNAs in eukaryotes.

Numata K, Okada Y, Saito R, Kiyosawa H, Kanai A, Tomita M.

Gene. 2007 May 1;392(1-2):134-41. Epub 2006 Dec 13.

PMID:
17250976
22.

Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized.

Kiyosawa H, Mise N, Iwase S, Hayashizaki Y, Abe K.

Genome Res. 2005 Apr;15(4):463-74. Epub 2005 Mar 21.

23.

The decline and fate of an iron-induced subarctic phytoplankton bloom.

Boyd PW, Law CS, Wong CS, Nojiri Y, Tsuda A, Levasseur M, Takeda S, Rivkin R, Harrison PJ, Strzepek R, Gower J, McKay M, Abraham E, Arychuk M, Barwell-Clarke J, Crawford W, Crawford D, Hale M, Harada K, Johnson K, Kiyosawa H, Kudo I, Marchetti A, Miller W, Needoba J, Nishioka J, Ogawa H, Page J, Robert M, Saito H, Sastri A, Sherry N, Soutar T, Sutherland N, Taira Y, Whitney F, Wong SK, Yoshimura T.

Nature. 2004 Apr 1;428(6982):549-53.

PMID:
15058302
24.

Systematic genome-wide approach to positional candidate cloning for identification of novel human disease genes.

Kiyosawa H, Kawashima T, Silva D, Petrovsky N, Hasegawa Y, Sakai K, Hayashizaki Y.

Intern Med J. 2004 Mar;34(3):79-90.

PMID:
15030454
25.

Speculations on the role of natural antisense transcripts in mammalian X chromosome evolution.

Kiyosawa H, Abe K.

Cytogenet Genome Res. 2002;99(1-4):151-6.

PMID:
12900558
26.

Mapping of 19032 mouse cDNAs on mouse chromosomes.

Yamanaka I, Kiyosawa H, Kondo S, Saito T, Carninci P, Shinagawa A, Aizawa K, Fukuda S, Hara A, Itoh M, Kawai J, Shibata K, Arakawa T, Ishii Y, Hayashizaki Y.

J Struct Funct Genomics. 2002;2(1):23-8.

PMID:
12836671
27.

Antisense transcripts with FANTOM2 clone set and their implications for gene regulation.

Kiyosawa H, Yamanaka I, Osato N, Kondo S, Hayashizaki Y; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1324-34.

28.

Expression of the GLI2 oncogene and its isoforms in human basal cell carcinoma.

Tojo M, Kiyosawa H, Iwatsuki K, Nakamura K, Kaneko F.

Br J Dermatol. 2003 May;148(5):892-7.

PMID:
12786818
29.

A mesoscale iron enrichment in the western subarctic Pacific induces a large centric diatom bloom.

Tsuda A, Takeda S, Saito H, Nishioka J, Nojiri Y, Kudo I, Kiyosawa H, Shiomoto A, Imai K, Ono T, Shimamoto A, Tsumune D, Yoshimura T, Aono T, Hinuma A, Kinugasa M, Suzuki K, Sohrin Y, Noiri Y, Tani H, Deguchi Y, Tsurushima N, Ogawa H, Fukami K, Kuma K, Saino T.

Science. 2003 May 9;300(5621):958-61.

30.

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.

Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schönbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y; FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I & II Team.

Nature. 2002 Dec 5;420(6915):563-73.

PMID:
12466851
31.

Identification of seven loci for static glucokinesis and dynamic glucokinesis in mice.

Komatsu S, Kiyosawa H, Yoshiki A, Okazaki Y, Yoshino M, Tomaru Y, Watanabe S, Muramatsu M, Kusakabe M, Hayashizaki Y.

Mamm Genome. 2002 Jun;13(6):293-8.

PMID:
12115031
32.

Expression of a sonic hedgehog signal transducer, hedgehog-interacting protein, by human basal cell carcinoma.

Tojo M, Kiyosawa H, Iwatsuki K, Kaneko F.

Br J Dermatol. 2002 Jan;146(1):69-73.

PMID:
11841368
33.

Asb4, Ata3, and Dcn are novel imprinted genes identified by high-throughput screening using RIKEN cDNA microarray.

Mizuno Y, Sotomaru Y, Katsuzawa Y, Kono T, Meguro M, Oshimura M, Kawai J, Tomaru Y, Kiyosawa H, Nikaido I, Amanuma H, Hayashizaki Y, Okazaki Y.

Biochem Biophys Res Commun. 2002 Feb 8;290(5):1499-505.

PMID:
11820791
34.

[Mouse gene encyclopedia project: identification of the genes responsible for diseases].

Kiyosawa H, Hayashizaki Y.

Tanpakushitsu Kakusan Koso. 2001 Dec;46(16 Suppl):2365-70. Review. Japanese. No abstract available.

PMID:
11802395
35.

Computational analysis of full-length mouse cDNAs compared with human genome sequences.

Kondo S, Shinagawa A, Saito T, Kiyosawa H, Yamanaka I, Aizawa K, Fukuda S, Hara A, Itoh M, Kawai J, Shibata K, Hayashizaki Y.

Mamm Genome. 2001 Sep;12(9):673-7.

PMID:
11641714
36.

Functional annotation of a full-length mouse cDNA collection.

Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schönbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y; RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium.

Nature. 2001 Feb 8;409(6821):685-90.

PMID:
11217851
37.

Anti-tumor immunity against CT26 colon tumor in mice immunized with plasmid DNA encoding beta-galactosidase fused to an envelope protein of endogenous retrovirus.

Takeda J, Sato Y, Kiyosawa H, Mori T, Yokoya S, Irisawa A, Miyata M, Obara K, Fujita T, Suzuki T, Kasukawa R, Wanaka A.

Cell Immunol. 2000 Aug 25;204(1):11-8.

PMID:
11006013
38.

YAC/BAC-based physical and transcript mapping around the gracile axonal dystrophy (gad) locus identifies Uchl1, Pmx2b, Atp3a2, and Hip2 genes.

Wang Y, Saigoh K, Osaka H, Yamanishi T, Suh J, Kiyosawa H, Sakai Y, Wakana S, Wada K.

Genomics. 2000 Jun 15;66(3):333-6.

PMID:
10873389
39.

X-Linked syndrome of polyendocrinopathy, immune dysfunction, and diarrhea maps to Xp11.23-Xq13.3.

Bennett CL, Yoshioka R, Kiyosawa H, Barker DF, Fain PR, Shigeoka AO, Chance PF.

Am J Hum Genet. 2000 Feb;66(2):461-8.

40.

Expression of sonic hedgehog signal transducers, patched and smoothened, in human basal cell carcinoma.

Tojo M, Mori T, Kiyosawa H, Honma Y, Tanno Y, Kanazawa KY, Yokoya S, Kaneko F, Wanaka A.

Pathol Int. 1999 Aug;49(8):687-94.

PMID:
10504535
41.

Intragenic deletion in the gene encoding ubiquitin carboxy-terminal hydrolase in gad mice.

Saigoh K, Wang YL, Suh JG, Yamanishi T, Sakai Y, Kiyosawa H, Harada T, Ichihara N, Wakana S, Kikuchi T, Wada K.

Nat Genet. 1999 Sep;23(1):47-51.

PMID:
10471497
42.

Identification of a novel gene, OASIS, which encodes for a putative CREB/ATF family transcription factor in the long-term cultured astrocytes and gliotic tissue.

Honma Y, Kanazawa K, Mori T, Tanno Y, Tojo M, Kiyosawa H, Takeda J, Nikaido T, Tsukamoto T, Yokoya S, Wanaka A.

Brain Res Mol Brain Res. 1999 May 21;69(1):93-103.

PMID:
10350641
43.

Eos: a novel member of the Ikaros gene family expressed predominantly in the developing nervous system.

Honma Y, Kiyosawa H, Mori T, Oguri A, Nikaido T, Kanazawa K, Tojo M, Takeda J, Tanno Y, Yokoya S, Kawabata I, Ikeda H, Wanaka A.

FEBS Lett. 1999 Mar 19;447(1):76-80.

44.

Dictyostelium discoideum nuclear plasmid Ddp5 is a chimera related to the Ddp1 and Ddp2 plasmid families.

Rieben WK Jr, Gonzales CM, Gonzales ST, Pilkington KJ, Kiyosawa H, Hughes JE, Welker DL.

Genetics. 1998 Mar;148(3):1117-25.

45.

Ornithine decarboxylase overexpression in mouse 10T1/2 fibroblasts: cellular transformation and invasion.

Kubota S, Kiyosawa H, Nomura Y, Yamada T, Seyama Y.

J Natl Cancer Inst. 1997 Apr 16;89(8):567-71.

PMID:
9106645
46.

Locations of crossover breakpoints within the CMT1A-REP repeat in Japanese patients with CMT1A and HNPP.

Yamamoto M, Yasuda T, Hayasaka K, Ohnishi A, Yoshikawa H, Yanagihara T, Ikegami T, Yamamoto T, Ohashi H, Nishimura T, Mitsuma T, Kiyosawa H, Chance PF, Sobue G.

Hum Genet. 1997 Feb;99(2):151-4.

PMID:
9048912
47.

Facilitated diagnosis of CMT1A duplication in chromosome 17p11.2-12: analysis with a CMT1A-REP repeat probe and photostimulated luminescence imaging.

Ikegami T, Ikeda H, Chance PF, Kiyosawa H, Yamamoto M, Sobue G, Ohnishi A, Tachi N, Hayasaka K.

Hum Mutat. 1997;9(6):563-6.

PMID:
9195231
48.

Bucillamine induced pulmonary injury occurs with immunoglobulin decrease.

Inokuma S, Sakata M, Yoshida A, Shiratori K, Kiyosawa H.

J Rheumatol. 1996 Jul;23(7):1282-5.

PMID:
8823707
49.
50.

Analysis of the CMT1A-REP repeat: mapping crossover breakpoints in CMT1A and HNPP.

Kiyosawa H, Lensch MW, Chance PF.

Hum Mol Genet. 1995 Dec;4(12):2327-34.

PMID:
8634706

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