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Chest Radiographs in Congestive Heart Failure: Visualizing Neural Network Learning.

Seah JCY, Tang JSN, Kitchen A, Gaillard F, Dixon AF.

Radiology. 2019 Feb;290(2):514-522. doi: 10.1148/radiol.2018180887. Epub 2018 Nov 6.


Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation.

Brynildsrud OB, Pepperell CS, Suffys P, Grandjean L, Monteserin J, Debech N, Bohlin J, Alfsnes K, Pettersson JO, Kirkeleite I, Fandinho F, da Silva MA, Perdigao J, Portugal I, Viveiros M, Clark T, Caws M, Dunstan S, Thai PVK, Lopez B, Ritacco V, Kitchen A, Brown TS, van Soolingen D, O'Neill MB, Holt KE, Feil EJ, Mathema B, Balloux F, Eldholm V.

Sci Adv. 2018 Oct 17;4(10):eaat5869. doi: 10.1126/sciadv.aat5869. eCollection 2018 Oct.


Unlocking pandemic potential: prevalence and spatial patterns of key substitutions in avian influenza H5N1 in Egyptian isolates.

Young SG, Kitchen A, Kayali G, Carrel M.

BMC Infect Dis. 2018 Jul 6;18(1):314. doi: 10.1186/s12879-018-3222-6.


The evolutionary history of dogs in the Americas.

Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, Eldridge M, Enk J, Gopalakrishnan S, Gori K, Grimes V, Guiry E, Hansen AJ, Hulme-Beaman A, Johnson J, Kitchen A, Kasparov AK, Kwon YM, Nikolskiy PA, Lope CP, Manin A, Martin T, Meyer M, Myers KN, Omura M, Rouillard JM, Pavlova EY, Sciulli P, Sinding MS, Strakova A, Ivanova VV, Widga C, Willerslev E, Pitulko VV, Barnes I, Gilbert MTP, Dobney KM, Malhi RS, Murchison EP, Larson G, Frantz LAF.

Science. 2018 Jul 6;361(6397):81-85. doi: 10.1126/science.aao4776.


Complete Anopheles funestus mitogenomes reveal an ancient history of mitochondrial lineages and their distribution in southern and central Africa.

Jones CM, Lee Y, Kitchen A, Collier T, Pringle JC, Muleba M, Irish S, Stevenson JC, Coetzee M, Cornel AJ, Norris DE, Carpi G.

Sci Rep. 2018 Jun 13;8(1):9054. doi: 10.1038/s41598-018-27092-y.


Dissecting the decline of hepatitis C in first-time donors in England and Wales.

Reynolds CA, Davison KL, Andrews N, Patel P, Kitchen A, Brailsford SR.

Vox Sang. 2018 May;113(4):329-338. doi: 10.1111/vox.12638. Epub 2018 Feb 14.


Induced defences in plants reduce herbivory by increasing cannibalism.

Orrock J, Connolly B, Kitchen A.

Nat Ecol Evol. 2017 Aug;1(8):1205-1207. doi: 10.1038/s41559-017-0231-6. Epub 2017 Jul 10.


Genetic Discontinuity between the Maritime Archaic and Beothuk Populations in Newfoundland, Canada.

Duggan AT, Harris AJT, Marciniak S, Marshall I, Kuch M, Kitchen A, Renaud G, Southon J, Fuller B, Young J, Fiedel S, Golding GB, Grimes V, Poinar H.

Curr Biol. 2017 Oct 23;27(20):3149-3156.e11. doi: 10.1016/j.cub.2017.08.053. Epub 2017 Oct 12.


Acute malaria in a repeat blood donor.

Kitchen AD, Hewitt PE, Chiodini PL.

Transfus Med. 2017 Oct;27 Suppl 5:387-389. doi: 10.1111/tme.12441. Epub 2017 Jul 10. No abstract available.


Comparative analyses of whole genome sequences of Leishmania infantum isolates from humans and dogs in northeastern Brazil.

Teixeira DG, Monteiro GRG, Martins DRA, Fernandes MZ, Macedo-Silva V, Ansaldi M, Nascimento PRP, Kurtz MA, Streit JA, Ximenes MFFM, Pearson RD, Miles A, Blackwell JM, Wilson ME, Kitchen A, Donelson JE, Lima JPMS, Jeronimo SMB.

Int J Parasitol. 2017 Sep;47(10-11):655-665. doi: 10.1016/j.ijpara.2017.04.004. Epub 2017 Jun 10.


Hepatitis E risks: pigs or blood-that is the question.

Tedder RS, Ijaz S, Kitchen A, Ushiro-Lumb I, Tettmar KI, Hewitt P, Andrews N.

Transfusion. 2017 Feb;57(2):267-272. doi: 10.1111/trf.13976.


How's the Flu Getting Through? Landscape genetics suggests both humans and birds spread H5N1 in Egypt.

Young SG, Carrel M, Kitchen A, Malanson GP, Tamerius J, Ali M, Kayali G.

Infect Genet Evol. 2017 Apr;49:293-299. doi: 10.1016/j.meegid.2017.02.005. Epub 2017 Feb 4.


A molecular portrait of maternal sepsis from Byzantine Troy.

Devault AM, Mortimer TD, Kitchen A, Kiesewetter H, Enk JM, Golding GB, Southon J, Kuch M, Duggan AT, Aylward W, Gardner SN, Allen JE, King AM, Wright G, Kuroda M, Kato K, Briggs DE, Fornaciari G, Holmes EC, Poinar HN, Pepperell CS.

Elife. 2017 Jan 10;6. pii: e20983. doi: 10.7554/eLife.20983.


Armed conflict and population displacement as drivers of the evolution and dispersal of Mycobacterium tuberculosis.

Eldholm V, Pettersson JH, Brynildsrud OB, Kitchen A, Rasmussen EM, Lillebaek T, Rønning JO, Crudu V, Mengshoel AT, Debech N, Alfsnes K, Bohlin J, Pepperell CS, Balloux F.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13881-13886. Epub 2016 Nov 21.


Babesia microti from humans and ticks hold a genomic signature of strong population structure in the United States.

Carpi G, Walter KS, Mamoun CB, Krause PJ, Kitchen A, Lepore TJ, Dwivedi A, Cornillot E, Caccone A, Diuk-Wasser MA.

BMC Genomics. 2016 Nov 7;17(1):888.


Targeting of blood safety measures to affected areas with ongoing local transmission of malaria.

Domanović D, Kitchen A, Politis C, Panagiotopoulos T, Bluemel J, Van Bortel W, Overbosch D, Lieshout-Krikke R, Fabra C, Facco G, Zeller H.

Transfus Med. 2016 Jun;26(3):161-5. doi: 10.1111/tme.12318. Epub 2016 May 30.


Mitogenomes reveal diversity of the European Lyme borreliosis vector Ixodes ricinus in Italy.

Carpi G, Kitchen A, Kim HL, Ratan A, Drautz-Moses DI, McGraw JJ, Kazimirova M, Rizzoli A, Schuster SC.

Mol Phylogenet Evol. 2016 Aug;101:194-202. doi: 10.1016/j.ympev.2016.05.009. Epub 2016 May 7.


Virology, serology, and demography of hepatitis E viremic blood donors in South East England.

Tedder RS, Tettmar KI, Brailsford SR, Said B, Ushiro-Lumb I, Kitchen A, Morgan D, Lattimore S, Tossell J, Ijaz S, Hewitt PE.

Transfusion. 2016 Jun;56(6 Pt 2):1529-36. doi: 10.1111/trf.13498. Epub 2016 Feb 3.


Bayesian analyses of Yemeni mitochondrial genomes suggest multiple migration events with Africa and Western Eurasia.

Vyas DN, Kitchen A, Miró-Herrans AT, Pearson LN, Al-Meeri A, Mulligan CJ.

Am J Phys Anthropol. 2016 Mar;159(3):382-93. doi: 10.1002/ajpa.22890. Epub 2015 Nov 14.


The Epidemiology of Imported Malaria and Transfusion Policy in 5 Nonendemic Countries.

O'Brien SF, Delage G, Seed CR, Pillonel J, Fabra CC, Davison K, Kitchen A, Steele WR, Leiby DA.

Transfus Med Rev. 2015 Jul;29(3):162-71. doi: 10.1016/j.tmrv.2015.03.004. Epub 2015 Mar 26. Review.


Metrics of quality care in veterans: correlation between primary-care performance measures and inappropriate myocardial perfusion imaging.

Winchester DE, Kitchen A, Brandt JC, Dusaj RS, Virani SS, Bradley SM, Shaw LJ, Beyth RJ.

Clin Cardiol. 2015 Apr;38(4):195-9. doi: 10.1002/clc.22388. Epub 2015 Apr 13.


DNA analysis of ancient dogs of the Americas: identifying possible founding haplotypes and reconstructing population histories.

Witt KE, Judd K, Kitchen A, Grier C, Kohler TA, Ortman SG, Kemp BM, Malhi RS.

J Hum Evol. 2015 Feb;79:105-18. doi: 10.1016/j.jhevol.2014.10.012. Epub 2014 Dec 18.


Hepatitis E virus in blood components: a prevalence and transmission study in southeast England.

Hewitt PE, Ijaz S, Brailsford SR, Brett R, Dicks S, Haywood B, Kennedy IT, Kitchen A, Patel P, Poh J, Russell K, Tettmar KI, Tossell J, Ushiro-Lumb I, Tedder RS.

Lancet. 2014 Nov 15;384(9956):1766-73. doi: 10.1016/S0140-6736(14)61034-5. Epub 2014 Jul 28.


Scombroid fishes provide novel insights into the trait/rate associations of molecular evolution.

Qiu F, Kitchen A, Burleigh JG, Miyamoto MM.

J Mol Evol. 2014 Jun;78(6):338-48. doi: 10.1007/s00239-014-9621-4. Epub 2014 May 9.


Detection of malarial DNA in blood donors--evidence of persistent infection.

Kitchen AD, Chiodini PL, Tossell J.

Vox Sang. 2014 Aug;107(2):123-31. doi: 10.1111/vox.12142. Epub 2014 Mar 21.


Acute hepatitis B in blood donors over a 5-year period in England and North Wales: who is getting infected?

Rosenberg GK, Lattimore S, Brailsford SR, Hewitt PE, Tettmar KI, Kitchen AD, Ijaz S, Tedder RS.

Transfusion. 2014 Jun;54(6):1660-5. doi: 10.1111/trf.12497. Epub 2013 Nov 26.


The role of selection in shaping diversity of natural M. tuberculosis populations.

Pepperell CS, Casto AM, Kitchen A, Granka JM, Cornejo OE, Holmes EC, Birren B, Galagan J, Feldman MW.

PLoS Pathog. 2013 Aug;9(8):e1003543. doi: 10.1371/journal.ppat.1003543. Epub 2013 Aug 15. Erratum in: PLoS Pathog. 2013 Aug;9(8). doi:10.1371/annotation/cff22061-44d5-4301-b853-41702d160203. Holmes, Eddie C [corrected to Holmes, Edward C].


Effective serological and molecular screening of deceased tissue donors.

Kitchen AD, Newham JA, Gillan HL.

Cell Tissue Bank. 2013 Dec;14(4):633-44. doi: 10.1007/s10561-012-9358-5. Epub 2013 Jan 29.


The diversity of chronic hepatitis B virus infections within blood donors in England and North Wales 2005 through 2010.

Rosenberg GK, Lattimore S, Brailsford SR, Hewitt PE, Tettmar KI, Kitchen AD, Ijaz S, Tedder RS.

Transfusion. 2013 Oct;53(10 Pt 2):2467-76. doi: 10.1111/trf.12003. Epub 2012 Dec 7.


Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.

Holt KE, Baker S, Weill FX, Holmes EC, Kitchen A, Yu J, Sangal V, Brown DJ, Coia JE, Kim DW, Choi SY, Kim SH, da Silveira WD, Pickard DJ, Farrar JJ, Parkhill J, Dougan G, Thomson NR.

Nat Genet. 2012 Sep;44(9):1056-9. doi: 10.1038/ng.2369. Epub 2012 Aug 5.


A possible explanation for the population size discrepancy in tuna (genus Thunnus) estimated from mitochondrial DNA and microsatellite data.

Qiu F, Kitchen A, Beerli P, Miyamoto MM.

Mol Phylogenet Evol. 2013 Feb;66(2):463-8. doi: 10.1016/j.ympev.2012.05.002. Epub 2012 May 9.


The early implementation of Trypanosoma cruzi antibody screening of donors and donations within England: preempting a problem.

Kitchen AD, Hewitt PE, Chiodini PL.

Transfusion. 2012 Sep;52(9):1931-9. doi: 10.1111/j.1537-2995.2012.03599.x. Epub 2012 Mar 13.


Molecular evolution of the insect-specific flaviviruses.

Cook S, Moureau G, Kitchen A, Gould EA, de Lamballerie X, Holmes EC, Harbach RE.

J Gen Virol. 2012 Feb;93(Pt 2):223-34. doi: 10.1099/vir.0.036525-0. Epub 2011 Oct 19. Review.


Detection of hepatitis E virus RNA in plasma mini-pools from blood donors in England.

Ijaz S, Szypulska R, Tettmar KI, Kitchen A, Tedder RS.

Vox Sang. 2012 Apr;102(3):272. doi: 10.1111/j.1423-0410.2011.01554.x. Epub 2011 Sep 30. No abstract available.


Risk-adjusted scoring systems can predict surgeons' performance in colorectal surgery.

Leung E, Ferjani AM, Kitchen A, Griffin D, Stellard N, Wong LS.

Surgeon. 2011 Feb;9(1):3-7. doi: 10.1016/j.surge.2010.07.008. Epub 2010 Aug 21.


Family level phylogenies reveal modes of macroevolution in RNA viruses.

Kitchen A, Shackelton LA, Holmes EC.

Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):238-43. doi: 10.1073/pnas.1011090108. Epub 2010 Dec 20.


Origin of clothing lice indicates early clothing use by anatomically modern humans in Africa.

Toups MA, Kitchen A, Light JE, Reed DL.

Mol Biol Evol. 2011 Jan;28(1):29-32. doi: 10.1093/molbev/msq234. Epub 2010 Sep 7.


The evolutionary dynamics of bluetongue virus.

Carpi G, Holmes EC, Kitchen A.

J Mol Evol. 2010 Jun;70(6):583-92. doi: 10.1007/s00239-010-9354-y. Epub 2010 Jun 5.


Qualification of serological infectious disease assays for the screening of samples from deceased tissue donors.

Kitchen AD, Newham JA.

Cell Tissue Bank. 2011 May;12(2):117-24. doi: 10.1007/s10561-010-9175-7. Epub 2010 Apr 18.


Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses.

Firth C, Kitchen A, Shapiro B, Suchard MA, Holmes EC, Rambaut A.

Mol Biol Evol. 2010 Sep;27(9):2038-51. doi: 10.1093/molbev/msq088. Epub 2010 Apr 2.


The use of malaria antibody tests in the prevention of transfusion-transmitted malaria.

Reesink HW, Panzer S, Wendel S, Levi JE, Ullum H, Ekblom-Kullberg S, Seifried E, Schmidt M, Shinar E, Prati D, Berzuini A, Ghosh S, Flesland Ø, Jeansson S, Zhiburt E, Piron M, Sauleda S, Ekermo B, Eglin R, Kitchen A, Dodd RY, Leiby DA, Katz LM, Kleinman S.

Vox Sang. 2010 Apr;98(3 Pt 2):468-78. doi: 10.1111/j.1423-0410.2009.01301.x. Epub 2010 Jan 28. No abstract available.


Lot release testing of serological infectious disease assays used for donor and donation screening.

Kitchen AD, Newham JA.

Vox Sang. 2010 May;98(4):508-16. doi: 10.1111/j.1423-0410.2009.01305.x. Epub 2010 Jan 11.


The serological screening of deceased tissue donors within the English Blood Service for infectious agents--a review of current outcomes and a more effective strategy for the future.

Kitchen AD, Gillan HL.

Vox Sang. 2010 Apr;98(3 Pt 1):e193-200. doi: 10.1111/j.1423-0410.2009.01284.x. Epub 2009 Nov 18.


Yellow fever virus exhibits slower evolutionary dynamics than dengue virus.

Sall AA, Faye O, Diallo M, Firth C, Kitchen A, Holmes EC.

J Virol. 2010 Jan;84(2):765-72. doi: 10.1128/JVI.01738-09. Epub 2009 Nov 4.


Molecular evolutionary dynamics of Ross River virus and implications for vaccine efficacy.

Jones A, Lowry K, Aaskov J, Holmes EC, Kitchen A.

J Gen Virol. 2010 Jan;91(Pt 1):182-8. doi: 10.1099/vir.0.014209-0. Epub 2009 Sep 16.


Origin and phylodynamics of rabbit hemorrhagic disease virus.

Kerr PJ, Kitchen A, Holmes EC.

J Virol. 2009 Dec;83(23):12129-38. doi: 10.1128/JVI.01523-09. Epub 2009 Sep 16.


HIV screening reactivity due to donor participation in HIV vaccine trials.

Kitchen AD, Hewitt PE.

Vox Sang. 2009 Aug;97(2):169-71. doi: 10.1111/j.1423-0410.2009.01195.x. Epub 2009 May 11.


Bayesian phylogenetic analysis of Semitic languages identifies an Early Bronze Age origin of Semitic in the Near East.

Kitchen A, Ehret C, Assefa S, Mulligan CJ.

Proc Biol Sci. 2009 Aug 7;276(1668):2703-10. doi: 10.1098/rspb.2009.0408. Epub 2009 Apr 29.


Updated three-stage model for the peopling of the Americas.

Mulligan CJ, Kitchen A, Miyamoto MM.

PLoS One. 2008 Sep 17;3(9):e3199. doi: 10.1371/journal.pone.0003199.


A three-stage colonization model for the peopling of the Americas.

Kitchen A, Miyamoto MM, Mulligan CJ.

PLoS One. 2008 Feb 13;3(2):e1596. doi: 10.1371/journal.pone.0001596.

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