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Items: 1 to 50 of 113

1.

A Genetically Tractable, Natural Mouse Model of Cryptosporidiosis Offers Insights into Host Protective Immunity.

Sateriale A, Šlapeta J, Baptista R, Engiles JB, Gullicksrud JA, Herbert GT, Brooks CF, Kugler EM, Kissinger JC, Hunter CA, Striepen B.

Cell Host Microbe. 2019 Jul 10;26(1):135-146.e5. doi: 10.1016/j.chom.2019.05.006. Epub 2019 Jun 20.

2.

Distinct amino acid and lipid perturbations characterize acute versus chronic malaria.

Cordy RJ, Patrapuvich R, Lili LN, Cabrera-Mora M, Chien JT, Tharp GK, Khadka M, Meyer EV, Lapp SA, Joyner CJ, Garcia A, Banton S, Tran V, Luvira V, Rungin S, Saeseu T, Rachaphaew N, Pakala SB, DeBarry JD; MaHPIC Consortium, Kissinger JC, Ortlund EA, Bosinger SE, Barnwell JW, Jones DP, Uppal K, Li S, Sattabongkot J, Moreno A, Galinski MR.

JCI Insight. 2019 May 2;4(9). pii: 125156. doi: 10.1172/jci.insight.125156. eCollection 2019 May 2.

3.

Evolution of Cryptosporidium.

Kissinger JC.

Nat Microbiol. 2019 May;4(5):730-731. doi: 10.1038/s41564-019-0438-1. No abstract available.

PMID:
31015741
4.

FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes.

Basenko EY, Pulman JA, Shanmugasundram A, Harb OS, Crouch K, Starns D, Warrenfeltz S, Aurrecoechea C, Stoeckert CJ Jr, Kissinger JC, Roos DS, Hertz-Fowler C.

J Fungi (Basel). 2018 Mar 20;4(1). pii: E39. doi: 10.3390/jof4010039.

5.

EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.

Warrenfeltz S, Basenko EY, Crouch K, Harb OS, Kissinger JC, Roos DS, Shanmugasundram A, Silva-Franco F.

Methods Mol Biol. 2018;1757:69-113. doi: 10.1007/978-1-4939-7737-6_5.

PMID:
29761457
6.

Assembly of highly repetitive genomes using short reads: the genome of discrete typing unit III Trypanosoma cruzi strain 231.

Baptista RP, Reis-Cunha JL, DeBarry JD, Chiari E, Kissinger JC, Bartholomeu DC, Macedo AM.

Microb Genom. 2018 Apr;4(4). doi: 10.1099/mgen.0.000156. Epub 2018 Feb 14.

7.

Enrichment of Cryptosporidium parvum from in vitro culture as measured by total RNA and subsequent sequence analysis.

Kissinger JC, Hermetz KE, Woods KM, Upton SJ.

Mol Biochem Parasitol. 2018 Mar;220:5-9. doi: 10.1016/j.molbiopara.2017.12.004. Epub 2017 Dec 29.

8.

Correction to: Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques.

Tang Y, Joyner CJ, Cabrera-Mora M, Saney CL, Lapp SA, Nural MV, Pakala SB, DeBarry JD, Soderberg S; MaHPIC Consortium, Kissinger JC, Lamb TJ, Galinski MR, Styczynski MP.

Malar J. 2017 Dec 4;16(1):486. doi: 10.1186/s12936-017-2134-z.

9.

Ablation of an Ovarian Tumor Family Deubiquitinase Exposes the Underlying Regulation Governing the Plasticity of Cell Cycle Progression in Toxoplasma gondii.

Dhara A, de Paula Baptista R, Kissinger JC, Snow EC, Sinai AP.

MBio. 2017 Nov 21;8(6). pii: e01846-17. doi: 10.1128/mBio.01846-17.

10.

MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.

Oliveira FS, Brestelli J, Cade S, Zheng J, Iodice J, Fischer S, Aurrecoechea C, Kissinger JC, Brunk BP, Stoeckert CJ Jr, Fernandes GR, Roos DS, Beiting DP.

Nucleic Acids Res. 2018 Jan 4;46(D1):D684-D691. doi: 10.1093/nar/gkx1027.

11.

Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques.

Tang Y, Joyner CJ, Cabrera-Mora M, Saney CL, Lapp SA, Nural MV, Pakala SB, DeBarry JD, Soderberg S; MaHPIC Consortium, Kissinger JC, Lamb TJ, Galinski MR, Styczynski MP.

Malar J. 2017 Sep 22;16(1):384. doi: 10.1186/s12936-017-2029-z. Erratum in: Malar J. 2017 Dec 4;16(1):486.

12.

PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family.

Lapp SA, Geraldo JA, Chien JT, Ay F, Pakala SB, Batugedara G, Humphrey J; MaHPIC consortium, DeBARRY JD, Le Roch KG, Galinski MR, Kissinger JC.

Parasitology. 2018 Jan;145(1):71-84. doi: 10.1017/S0031182017001329. Epub 2017 Jul 19.

13.

Evolution of the Apicomplexan Sugar Transporter Gene Family Repertoire.

Mahmud O, Kissinger JC.

Int J Genomics. 2017;2017:1707231. doi: 10.1155/2017/1707231. Epub 2017 May 7.

14.

A Glycosylphosphatidylinositol-Anchored Carbonic Anhydrase-Related Protein of Toxoplasma gondii Is Important for Rhoptry Biogenesis and Virulence.

Chasen NM, Asady B, Lemgruber L, Vommaro RC, Kissinger JC, Coppens I, Moreno SNJ.

mSphere. 2017 May 17;2(3). pii: e00027-17. doi: 10.1128/mSphere.00027-17. eCollection 2017 May-Jun.

15.

Cryptosporidium hominis gene catalog: a resource for the selection of novel Cryptosporidium vaccine candidates.

Ifeonu OO, Simon R, Tennant SM, Sheoran AS, Daly MC, Felix V, Kissinger JC, Widmer G, Levine MM, Tzipori S, Silva JC.

Database (Oxford). 2016 Oct 19;2016. pii: baw137. doi: 10.1093/database/baw137. Print 2016.

16.

EuPathDB: the eukaryotic pathogen genomics database resource.

Aurrecoechea C, Barreto A, Basenko EY, Brestelli J, Brunk BP, Cade S, Crouch K, Doherty R, Falke D, Fischer S, Gajria B, Harb OS, Heiges M, Hertz-Fowler C, Hu S, Iodice J, Kissinger JC, Lawrence C, Li W, Pinney DF, Pulman JA, Roos DS, Shanmugasundram A, Silva-Franco F, Steinbiss S, Stoeckert CJ Jr, Spruill D, Wang H, Warrenfeltz S, Zheng J.

Nucleic Acids Res. 2017 Jan 4;45(D1):D581-D591. doi: 10.1093/nar/gkw1105. Epub 2016 Nov 29.

17.

Plasmodium cynomolgi infections in rhesus macaques display clinical and parasitological features pertinent to modelling vivax malaria pathology and relapse infections.

Joyner C, Moreno A, Meyer EV, Cabrera-Mora M; MaHPIC Consortium, Kissinger JC, Barnwell JW, Galinski MR.

Malar J. 2016 Sep 2;15(1):451. doi: 10.1186/s12936-016-1480-6.

18.

High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology.

Chien JT, Pakala SB, Geraldo JA, Lapp SA, Humphrey JC, Barnwell JW, Kissinger JC, Galinski MR.

Genome Announc. 2016 Sep 1;4(5). pii: e00883-16. doi: 10.1128/genomeA.00883-16.

19.

Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1.

Ifeonu OO, Chibucos MC, Orvis J, Su Q, Elwin K, Guo F, Zhang H, Xiao L, Sun M, Chalmers RM, Fraser CM, Zhu G, Kissinger JC, Widmer G, Silva JC.

Pathog Dis. 2016 Oct;74(7). pii: ftw080. Epub 2016 Aug 12.

20.

An unsettling picture emerges from population genomic studies of Plasmodium vivax.

Kissinger JC.

Nat Genet. 2016 Jul 27;48(8):825-6. doi: 10.1038/ng.3630.

PMID:
27463397
21.
22.

The Genome of Haemoproteus tartakovskyi and Its Relationship to Human Malaria Parasites.

Bensch S, Canbäck B, DeBarry JD, Johansson T, Hellgren O, Kissinger JC, Palinauskas V, Videvall E, Valkiūnas G.

Genome Biol Evol. 2016 May 12;8(5):1361-73. doi: 10.1093/gbe/evw081.

23.

Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes.

Lorenzi H, Khan A, Behnke MS, Namasivayam S, Swapna LS, Hadjithomas M, Karamycheva S, Pinney D, Brunk BP, Ajioka JW, Ajzenberg D, Boothroyd JC, Boyle JP, Dardé ML, Diaz-Miranda MA, Dubey JP, Fritz HM, Gennari SM, Gregory BD, Kim K, Saeij JP, Su C, White MW, Zhu XQ, Howe DK, Rosenthal BM, Grigg ME, Parkinson J, Liu L, Kissinger JC, Roos DS, Sibley LD.

Nat Commun. 2016 Jan 7;7:10147. doi: 10.1038/ncomms10147.

24.

Neglected Tropical Diseases in the Post-Genomic Era.

Buscaglia CA, Kissinger JC, Agüero F.

Trends Genet. 2015 Oct;31(10):539-555. doi: 10.1016/j.tig.2015.06.002. Review.

PMID:
26450337
25.

From genome-scale data to models of infectious disease: A Bayesian network-based strategy to drive model development.

Yin W, Kissinger JC, Moreno A, Galinski MR, Styczynski MP.

Math Biosci. 2015 Dec;270(Pt B):156-68. doi: 10.1016/j.mbs.2015.06.006. Epub 2015 Jun 17.

26.

Systems-based analysis of the Sarcocystis neurona genome identifies pathways that contribute to a heteroxenous life cycle.

Blazejewski T, Nursimulu N, Pszenny V, Dangoudoubiyam S, Namasivayam S, Chiasson MA, Chessman K, Tonkin M, Swapna LS, Hung SS, Bridgers J, Ricklefs SM, Boulanger MJ, Dubey JP, Porcella SF, Kissinger JC, Howe DK, Grigg ME, Parkinson J.

MBio. 2015 Feb 10;6(1). pii: e02445-14. doi: 10.1128/mBio.02445-14.

27.

Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study.

Lee KJ, Yin W, Arafat D, Tang Y, Uppal K, Tran V, Cabrera-Mora M, Lapp S, Moreno A, Meyer E, DeBarry JD, Pakala S, Nayak V, Kissinger JC, Jones DP, Galinski M, Styczynski MP, Gibson G.

Front Cell Dev Biol. 2014 Oct 8;2:54. doi: 10.3389/fcell.2014.00054. eCollection 2014.

28.

Metabolomics in the fight against malaria.

Salinas JL, Kissinger JC, Jones DP, Galinski MR.

Mem Inst Oswaldo Cruz. 2014 Aug;109(5):589-97. Review.

29.

The Cryptosporidium parvum ApiAP2 gene family: insights into the evolution of apicomplexan AP2 regulatory systems.

Oberstaller J, Pumpalova Y, Schieler A, Llinás M, Kissinger JC.

Nucleic Acids Res. 2014 Jul;42(13):8271-84. doi: 10.1093/nar/gku500. Epub 2014 Jun 23.

30.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

31.

A survey of innovation through duplication in the reduced genomes of twelve parasites.

DeBarry JD, Kissinger JC.

PLoS One. 2014 Jun 11;9(6):e99213. doi: 10.1371/journal.pone.0099213. eCollection 2014.

32.

Genome-wide upstream motif analysis of Cryptosporidium parvum genes clustered by expression profile.

Oberstaller J, Joseph SJ, Kissinger JC.

BMC Genomics. 2013 Jul 29;14:516. doi: 10.1186/1471-2164-14-516.

33.

Malaria diagnostics and surveillance in the post-genomic era.

Lucchi NW, Oberstaller J, Kissinger JC, Udhayakumar V.

Public Health Genomics. 2013;16(1-2):37-43. doi: 10.1159/000345607. Epub 2013 Mar 18.

34.

Real-time loop-mediated isothermal amplification (RealAmp) for the species-specific identification of Plasmodium vivax.

Patel JC, Oberstaller J, Xayavong M, Narayanan J, DeBarry JD, Srinivasamoorthy G, Villegas L, Escalante AA, DaSilva A, Peterson DS, Barnwell JW, Kissinger JC, Udhayakumar V, Lucchi NW.

PLoS One. 2013;8(1):e54986. doi: 10.1371/journal.pone.0054986. Epub 2013 Jan 22.

35.

EuPathDB: the eukaryotic pathogen database.

Aurrecoechea C, Barreto A, Brestelli J, Brunk BP, Cade S, Doherty R, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Hu S, Iodice J, Kissinger JC, Kraemer ET, Li W, Pinney DF, Pitts B, Roos DS, Srinivasamoorthy G, Stoeckert CJ Jr, Wang H, Warrenfeltz S.

Nucleic Acids Res. 2013 Jan;41(Database issue):D684-91. doi: 10.1093/nar/gks1113. Epub 2012 Nov 21.

36.

SchistoDB: an updated genome resource for the three key schistosomes of humans.

Zerlotini A, Aguiar ER, Yu F, Xu H, Li Y, Young ND, Gasser RB, Protasio AV, Berriman M, Roos DS, Kissinger JC, Oliveira G.

Nucleic Acids Res. 2013 Jan;41(Database issue):D728-31. doi: 10.1093/nar/gks1087. Epub 2012 Nov 17.

37.

A 43-nucleotide U-rich element in 3'-untranslated region of large number of Trypanosoma cruzi transcripts is important for mRNA abundance in intracellular amastigotes.

Li ZH, De Gaudenzi JG, Alvarez VE, Mendiondo N, Wang H, Kissinger JC, Frasch AC, Docampo R.

J Biol Chem. 2012 Jun 1;287(23):19058-69. doi: 10.1074/jbc.M111.338699. Epub 2012 Apr 12.

38.

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.

Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Guo H, Kissinger JC, Paterson AH.

Nucleic Acids Res. 2012 Apr;40(7):e49. doi: 10.1093/nar/gkr1293. Epub 2012 Jan 4.

39.

FungiDB: an integrated functional genomics database for fungi.

Stajich JE, Harris T, Brunk BP, Brestelli J, Fischer S, Harb OS, Kissinger JC, Li W, Nayak V, Pinney DF, Stoeckert CJ Jr, Roos DS.

Nucleic Acids Res. 2012 Jan;40(Database issue):D675-81. doi: 10.1093/nar/gkr918. Epub 2011 Nov 7.

40.

Recombination in avian gamma-coronavirus infectious bronchitis virus.

Thor SW, Hilt DA, Kissinger JC, Paterson AH, Jackwood MW.

Viruses. 2011 Sep;3(9):1777-99. doi: 10.3390/v3091777. Epub 2011 Sep 23.

41.

Changes in nonstructural protein 3 are associated with attenuation in avian coronavirus infectious bronchitis virus.

Phillips JE, Jackwood MW, McKinley ET, Thor SW, Hilt DA, Acevedol ND, Williams SM, Kissinger JC, Paterson AH, Robertson JS, Lemke C.

Virus Genes. 2012 Feb;44(1):63-74. doi: 10.1007/s11262-011-0668-7. Epub 2011 Sep 10.

PMID:
21909766
42.

Genome cartography: charting the apicomplexan genome.

Kissinger JC, DeBarry J.

Trends Parasitol. 2011 Aug;27(8):345-54. doi: 10.1016/j.pt.2011.03.006. Epub 2011 Jul 19. Review.

43.

The Strategies WDK: a graphical search interface and web development kit for functional genomics databases.

Fischer S, Aurrecoechea C, Brunk BP, Gao X, Harb OS, Kraemer ET, Pennington C, Treatman C, Kissinger JC, Roos DS, Stoeckert CJ.

Database (Oxford). 2011 Jun 23;2011:bar027. doi: 10.1093/database/bar027. Print 2011.

44.

Attenuated live vaccine usage affects accurate measures of virus diversity and mutation rates in avian coronavirus infectious bronchitis virus.

McKinley ET, Jackwood MW, Hilt DA, Kissinger JC, Robertson JS, Lemke C, Paterson AH.

Virus Res. 2011 Jun;158(1-2):225-34. doi: 10.1016/j.virusres.2011.04.006. Epub 2011 Apr 22.

PMID:
21539870
45.

Applied genomics: data mining reveals species-specific malaria diagnostic targets more sensitive than 18S rRNA.

Demas A, Oberstaller J, DeBarry J, Lucchi NW, Srinivasamoorthy G, Sumari D, Kabanywanyi AM, Villegas L, Escalante AA, Kachur SP, Barnwell JW, Peterson DS, Udhayakumar V, Kissinger JC.

J Clin Microbiol. 2011 Jul;49(7):2411-8. doi: 10.1128/JCM.02603-10. Epub 2011 Apr 27.

46.

Jumbled genomes: missing Apicomplexan synteny.

DeBarry JD, Kissinger JC.

Mol Biol Evol. 2011 Oct;28(10):2855-71. doi: 10.1093/molbev/msr103. Epub 2011 Apr 19.

47.

AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.

Aurrecoechea C, Barreto A, Brestelli J, Brunk BP, Caler EV, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Iodice J, Kissinger JC, Kraemer ET, Li W, Nayak V, Pennington C, Pinney DF, Pitts B, Roos DS, Srinivasamoorthy G, Stoeckert CJ Jr, Treatman C, Wang H.

Nucleic Acids Res. 2011 Jan;39(Database issue):D612-9. doi: 10.1093/nar/gkq1006. Epub 2010 Oct 24.

48.

The Alveolate Perkinsus marinus: biological insights from EST gene discovery.

Joseph SJ, Fernández-Robledo JA, Gardner MJ, El-Sayed NM, Kuo CH, Schott EJ, Wang H, Kissinger JC, Vasta GR.

BMC Genomics. 2010 Apr 7;11:228. doi: 10.1186/1471-2164-11-228.

49.

Emergence of a group 3 coronavirus through recombination.

Jackwood MW, Boynton TO, Hilt DA, McKinley ET, Kissinger JC, Paterson AH, Robertson J, Lemke C, McCall AW, Williams SM, Jackwood JW, Byrd LA.

Virology. 2010 Mar 1;398(1):98-108. doi: 10.1016/j.virol.2009.11.044.

50.

EuPathDB: a portal to eukaryotic pathogen databases.

Aurrecoechea C, Brestelli J, Brunk BP, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer ET, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Srinivasamoorthy G, Stoeckert CJ Jr, Thibodeau R, Treatman C, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D415-9. doi: 10.1093/nar/gkp941. Epub 2009 Nov 13.

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