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Items: 25

1.

Corrigendum: Long-Term Encapsulated Nitrate Supplementation Modulates Rumen Microbial Diversity and Rumen Fermentation to Reduce Methane Emission in Grazing Steers.

Granja-Salcedo YT, Fernandes RM, de Araujo RC, Kishi LT, Berchielli TT, de Resende FD, Berndt A, Siqueira GR.

Front Microbiol. 2019 Jul 29;10:1732. doi: 10.3389/fmicb.2019.01732. eCollection 2019.

2.

Long-Term Encapsulated Nitrate Supplementation Modulates Rumen Microbial Diversity and Rumen Fermentation to Reduce Methane Emission in Grazing Steers.

Granja-Salcedo YT, Fernandes RM, de Araujo RC, Kishi LT, Berchielli TT, de Resende FD, Berndt A, Siqueira GR.

Front Microbiol. 2019 Mar 29;10:614. doi: 10.3389/fmicb.2019.00614. eCollection 2019. Erratum in: Front Microbiol. 2019 Jul 29;10:1732.

3.

Heterologous expression, purification and biochemical characterization of a new xylanase from Myceliophthora heterothallica F.2.1.4.

de Amo GS, Bezerra-Bussoli C, da Silva RR, Kishi LT, Ferreira H, Mariutti RB, Arni RK, Gomes E, Bonilla-Rodriguez GO.

Int J Biol Macromol. 2019 Jun 15;131:798-805. doi: 10.1016/j.ijbiomac.2019.03.108. Epub 2019 Mar 21.

PMID:
30905755
4.

Draft genome of Thermomonospora sp. CIT 1 (Thermomonosporaceae) and in silico evidence of its functional role in filter cake biomass deconstruction.

Omori WP, Pinheiro DG, Kishi LT, Fernandes CC, Fernandes GC, Gomes-Pepe ES, Pavani CD, Lemos EGM, Souza JAM.

Genet Mol Biol. 2019 Jan-Mar;42(1):145-150. doi: 10.1590/1678-4685-GMB-2017-0376. Epub 2019 Mar 11.

5.

Comparison of two DNA extraction methods widely used in aquatic microbial ecology.

Mateus-Barros E, Meneghine AK, Bagatini IL, Fernandes CC, Kishi LT, Vieira AAH, Sarmento H.

J Microbiol Methods. 2019 Apr;159:12-17. doi: 10.1016/j.mimet.2019.02.005. Epub 2019 Feb 6.

PMID:
30738110
6.

Bacterial communities in mining soils and surrounding areas under regeneration process in a former ore mine.

Fernandes CC, Kishi LT, Lopes EM, Omori WP, Souza JAM, Alves LMC, Lemos EGM.

Braz J Microbiol. 2018 Jul - Sep;49(3):489-502. doi: 10.1016/j.bjm.2017.12.006. Epub 2018 Feb 13.

7.

A snapshot on prokaryotic diversity of the Solimões River basin (Amazon, Brazil).

Toyama D, Santos-Júnior CD, Kishi LT, Oliveira TCS, Garcia JW, Sarmento H, Miranda FP, Henrique-Silva F.

Genet Mol Res. 2017 May 18;16(2). doi: 10.4238/gmr16029567.

PMID:
28525656
8.

A transcriptomic survey of Migdolus fryanus (sugarcane rhizome borer) larvae.

Nakayama DG, Santos Júnior CD, Kishi LT, Pedezzi R, Santiago AC, Soares-Costa A, Henrique-Silva F.

PLoS One. 2017 Mar 1;12(3):e0173059. doi: 10.1371/journal.pone.0173059. eCollection 2017.

9.

Draft Genome Sequence of Bradyrhizobium elkanii TnphoA 33, a Producer of Polyhydroxyalkanoates.

Lopes EM, Kishi LT, Fernandes CC, Paganelli FL, Alves LM, Lemos EG, de Souza JA.

Genome Announc. 2017 Feb 23;5(8). pii: e01502-16. doi: 10.1128/genomeA.01502-16.

10.

Draft Genome Sequence of a Chitinophaga Strain Isolated from a Lignocellulose Biomass-Degrading Consortium.

Kishi LT, Lopes EM, Fernandes CC, Fernandes GC, Sacco LP, Carareto Alves LM, Lemos EG.

Genome Announc. 2017 Jan 19;5(3). pii: e01056-16. doi: 10.1128/genomeA.01056-16.

11.

Metagenome Sequencing of Prokaryotic Microbiota Collected from Rivers in the Upper Amazon Basin.

Santos-Júnior CD, Kishi LT, Toyama D, Soares-Costa A, Oliveira TC, de Miranda FP, Henrique-Silva F.

Genome Announc. 2017 Jan 12;5(2). pii: e01450-16. doi: 10.1128/genomeA.01450-16.

12.

Metagenomics Analysis of Microorganisms in Freshwater Lakes of the Amazon Basin.

Toyama D, Kishi LT, Santos-Júnior CD, Soares-Costa A, de Oliveira TC, de Miranda FP, Henrique-Silva F.

Genome Announc. 2016 Dec 22;4(6). pii: e01440-16. doi: 10.1128/genomeA.01440-16.

13.
14.

Liming in the sugarcane burnt system and the green harvest practice affect soil bacterial community in northeastern São Paulo, Brazil.

Val-Moraes SP, de Macedo HS, Kishi LT, Pereira RM, Navarrete AA, Mendes LW, de Figueiredo EB, La Scala N Jr, Tsai SM, de Macedo Lemos EG, Alves LM.

Antonie Van Leeuwenhoek. 2016 Dec;109(12):1643-1654. Epub 2016 Sep 14.

PMID:
27629424
15.

Characterization of a Recombinant Cathepsin B-Like Cysteine Peptidase from Diaphorina citri Kuwayama (Hemiptera: Liviidae): A Putative Target for Control of Citrus Huanglongbing.

Ferrara TF, Schneider VK, Kishi LT, Carmona AK, Alves MF, Belasque-Júnior J, Rosa JC, Hunter WB, Henrique-Silva F, Soares-Costa A.

PLoS One. 2015 Dec 30;10(12):e0145132. doi: 10.1371/journal.pone.0145132. eCollection 2015.

16.

Phylogenetic Profiling and Diversity of Bacterial Communities in the Death Valley, an Extreme Habitat in the Atacama Desert.

Piubeli F, de Lourdes Moreno M, Kishi LT, Henrique-Silva F, García MT, Mellado E.

Indian J Microbiol. 2015 Dec;55(4):392-9. doi: 10.1007/s12088-015-0539-3. Epub 2015 Jun 23.

17.

Metagenomic Assembly and Draft Genome Sequence of an Uncharacterized Prevotella sp. from Nelore Rumen.

Kishi LT, de Jesus RB, Pavani CD, Lemos EG, de Souza JA.

Genome Announc. 2015 Jul 9;3(4). pii: e00723-15. doi: 10.1128/genomeA.00723-15.

18.

Transcriptional profile of sweet orange in response to chitosan and salicylic acid.

Coqueiro DS, de Souza AA, Takita MA, Rodrigues CM, Kishi LT, Machado MA.

BMC Genomics. 2015 Apr 12;16:288. doi: 10.1186/s12864-015-1440-5.

19.

A novel β-fructofuranosidase in Coleoptera: Characterization of a β-fructofuranosidase from the sugarcane weevil, Sphenophorus levis.

Pedezzi R, Fonseca FP, Santos Júnior CD, Kishi LT, Terra WR, Henrique-Silva F.

Insect Biochem Mol Biol. 2014 Dec;55:31-8. doi: 10.1016/j.ibmb.2014.10.005. Epub 2014 Nov 1.

PMID:
25447033
20.

RNA-Seq analysis of Citrus reticulata in the early stages of Xylella fastidiosa infection reveals auxin-related genes as a defense response.

Rodrigues CM, de Souza AA, Takita MA, Kishi LT, Machado MA.

BMC Genomics. 2013 Oct 3;14:676. doi: 10.1186/1471-2164-14-676.

21.

Global expression profile of biofilm resistance to antimicrobial compounds in the plant-pathogenic bacterium Xylella fastidiosa reveals evidence of persister cells.

Muranaka LS, Takita MA, Olivato JC, Kishi LT, de Souza AA.

J Bacteriol. 2012 Sep;194(17):4561-9. doi: 10.1128/JB.00436-12. Epub 2012 Jun 22.

22.

Genetic diversity and population differentiation of Guignardia mangiferae from "Tahiti" acid lime.

Wickert E, de Macedo Lemos EG, Kishi LT, de Souza A, de Goes A.

ScientificWorldJournal. 2012;2012:125654. doi: 10.1100/2012/125654. Epub 2012 Apr 19.

23.

Global gene expression of Poncirus trifoliata, Citrus sunki and their hybrids under infection of Phytophthora parasitica.

Boava LP, Cristofani-Yaly M, Mafra VS, Kubo K, Kishi LT, Takita MA, Ribeiro-Alves M, Machado MA.

BMC Genomics. 2011 Jan 17;12:39. doi: 10.1186/1471-2164-12-39.

24.

Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa.

Van Sluys MA, de Oliveira MC, Monteiro-Vitorello CB, Miyaki CY, Furlan LR, Camargo LE, da Silva AC, Moon DH, Takita MA, Lemos EG, Machado MA, Ferro MI, da Silva FR, Goldman MH, Goldman GH, Lemos MV, El-Dorry H, Tsai SM, Carrer H, Carraro DM, de Oliveira RC, Nunes LR, Siqueira WJ, Coutinho LL, Kimura ET, Ferro ES, Harakava R, Kuramae EE, Marino CL, Giglioti E, Abreu IL, Alves LM, do Amaral AM, Baia GS, Blanco SR, Brito MS, Cannavan FS, Celestino AV, da Cunha AF, Fenille RC, Ferro JA, Formighieri EF, Kishi LT, Leoni SG, Oliveira AR, Rosa VE Jr, Sassaki FT, Sena JA, de Souza AA, Truffi D, Tsukumo F, Yanai GM, Zaros LG, Civerolo EL, Simpson AJ, Almeida NF Jr, Setubal JC, Kitajima JP.

J Bacteriol. 2003 Feb;185(3):1018-26.

25.

Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.

da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP.

Nature. 2002 May 23;417(6887):459-63.

PMID:
12024217

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