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Items: 38

1.

Endophytic bacterial communities in peels and pulp of five root vegetables.

Kõiv V, Arbo K, Maiväli Ü, Kisand V, Roosaare M, Remm M, Tenson T.

PLoS One. 2019 Jan 11;14(1):e0210542. doi: 10.1371/journal.pone.0210542. eCollection 2019.

2.

Highly Continuous Genome Assembly of Eurasian Perch (Perca fluviatilis) Using Linked-Read Sequencing.

Ozerov MY, Ahmad F, Gross R, Pukk L, Kahar S, Kisand V, Vasemägi A.

G3 (Bethesda). 2018 Dec 10;8(12):3737-3743. doi: 10.1534/g3.118.200768.

3.

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria.

Aun E, Brauer A, Kisand V, Tenson T, Remm M.

PLoS Comput Biol. 2018 Oct 22;14(10):e1006434. doi: 10.1371/journal.pcbi.1006434. eCollection 2018 Oct.

4.

Multidrug resistant Pseudomonas aeruginosa in Estonian hospitals.

Telling K, Laht M, Brauer A, Remm M, Kisand V, Maimets M, Tenson T, Lutsar I.

BMC Infect Dis. 2018 Oct 11;18(1):513. doi: 10.1186/s12879-018-3421-1.

5.

Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change.

Markussen T, Happel EM, Teikari JE, Huchaiah V, Alneberg J, Andersson AF, Sivonen K, Riemann L, Middelboe M, Kisand V.

Environ Microbiol. 2018 Aug;20(8):3083-3099. doi: 10.1111/1462-2920.14371. Epub 2018 Sep 19.

PMID:
30084235
6.

BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea.

Alneberg J, Sundh J, Bennke C, Beier S, Lundin D, Hugerth LW, Pinhassi J, Kisand V, Riemann L, Jürgens K, Labrenz M, Andersson AF.

Sci Data. 2018 Jul 31;5:180146. doi: 10.1038/sdata.2018.146.

7.

From microbial eukaryotes to metazoan vertebrates: Wide spectrum paleo-diversity in sedimentary ancient DNA over the last ~14,500 years.

Kisand V, Talas L, Kisand A, Stivrins N, Reitalu T, Alliksaar T, Vassiljev J, Liiv M, Heinsalu A, Seppä H, Veski S.

Geobiology. 2018 Nov;16(6):628-639. doi: 10.1111/gbi.12307. Epub 2018 Jul 23.

PMID:
30035382
8.

UVA-induced antimicrobial activity of ZnO/Ag nanocomposite covered surfaces.

Visnapuu M, Rosenberg M, Truska E, Nõmmiste E, Šutka A, Kahru A, Rähn M, Vija H, Orupõld K, Kisand V, Ivask A.

Colloids Surf B Biointerfaces. 2018 May 4;169:222-232. doi: 10.1016/j.colsurfb.2018.05.009. [Epub ahead of print]

PMID:
29778961
9.

Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish.

Vasemägi A, Visse M, Kisand V.

mSphere. 2017 Dec 20;2(6). pii: e00418-17. doi: 10.1128/mSphere.00418-17. eCollection 2017 Nov-Dec.

10.

Rainwater harvesting in American Samoa: current practices and indicative health risks.

Kirs M, Moravcik P, Gyawali P, Hamilton K, Kisand V, Gurr I, Shuler C, Ahmed W.

Environ Sci Pollut Res Int. 2017 May;24(13):12384-12392. doi: 10.1007/s11356-017-8858-z. Epub 2017 Mar 30.

PMID:
28357803
11.

Multiple lines of evidence to identify sewage as the cause of water quality impairment in an urbanized tropical watershed.

Kirs M, Kisand V, Wong M, Caffaro-Filho RA, Moravcik P, Harwood VJ, Yoneyama B, Fujioka RS.

Water Res. 2017 Jun 1;116:23-33. doi: 10.1016/j.watres.2017.03.024. Epub 2017 Mar 10.

PMID:
28292677
12.

Colorimetric gas detection by the varying thickness of a thin film of ultrasmall PTSA-coated TiO2 nanoparticles on a Si substrate.

Joost U, Šutka A, Visnapuu M, Tamm A, Lembinen M, Antsov M, Utt K, Smits K, Nõmmiste E, Kisand V.

Beilstein J Nanotechnol. 2017 Jan 24;8:229-236. doi: 10.3762/bjnano.8.25. eCollection 2017.

13.

Plasmid with Colistin Resistance Gene mcr-1 in Extended-Spectrum-β-Lactamase-Producing Escherichia coli Strains Isolated from Pig Slurry in Estonia.

Brauer A, Telling K, Laht M, Kalmus P, Lutsar I, Remm M, Kisand V, Tenson T.

Antimicrob Agents Chemother. 2016 Oct 21;60(11):6933-6936. doi: 10.1128/AAC.00443-16. Print 2016 Nov.

14.

Near-Bottom Hypoxia Impacts Dynamics of Bacterioplankton Assemblage throughout Water Column of the Gulf of Finland (Baltic Sea).

Laas P, Šatova E, Lips I, Lips U, Simm J, Kisand V, Metsis M.

PLoS One. 2016 May 23;11(5):e0156147. doi: 10.1371/journal.pone.0156147. eCollection 2016.

15.

Toxicity of 11 Metal Oxide Nanoparticles to Three Mammalian Cell Types In Vitro.

Ivask A, Titma T, Visnapuu M, Vija H, Kakinen A, Sihtmae M, Pokhrel S, Madler L, Heinlaan M, Kisand V, Shimmo R, Kahru A.

Curr Top Med Chem. 2015;15(18):1914-29.

PMID:
25961521
16.

Pharmaceutically active compounds: Their removal during slow sand filtration and their impact on slow sand filtration bacterial removal.

D'Alessio M, Yoneyama B, Kirs M, Kisand V, Ray C.

Sci Total Environ. 2015 Aug 15;524-525:124-35. doi: 10.1016/j.scitotenv.2015.04.014. Epub 2015 Apr 15.

PMID:
25889551
17.

Redox-specialized bacterioplankton metacommunity in a temperate estuary.

Laas P, Simm J, Lips I, Lips U, Kisand V, Metsis M.

PLoS One. 2015 Apr 10;10(4):e0122304. doi: 10.1371/journal.pone.0122304. eCollection 2015.

18.

Tackling antibiotic resistance: the environmental framework.

Berendonk TU, Manaia CM, Merlin C, Fatta-Kassinos D, Cytryn E, Walsh F, Bürgmann H, Sørum H, Norström M, Pons MN, Kreuzinger N, Huovinen P, Stefani S, Schwartz T, Kisand V, Baquero F, Martinez JL.

Nat Rev Microbiol. 2015 May;13(5):310-7. doi: 10.1038/nrmicro3439. Epub 2015 Mar 30. Review.

PMID:
25817583
19.

Less is more: extreme genome complexity reduction with ddRAD using Ion Torrent semiconductor technology.

Pukk L, Ahmad F, Hasan S, Kisand V, Gross R, Vasemägi A.

Mol Ecol Resour. 2015 Sep;15(5):1145-52. doi: 10.1111/1755-0998.12392. Epub 2015 Mar 10.

PMID:
25703535
20.

Manipulation of parental effort affects plumage bacterial load in a wild passerine.

Alt G, Saag P, Mägi M, Kisand V, Mänd R.

Oecologia. 2015 Jun;178(2):451-9. doi: 10.1007/s00442-015-3238-1. Epub 2015 Feb 7.

PMID:
25663331
21.

Photocatalytic antibacterial activity of nano-TiO2 (anatase)-based thin films: effects on Escherichia coli cells and fatty acids.

Joost U, Juganson K, Visnapuu M, Mortimer M, Kahru A, Nõmmiste E, Joost U, Kisand V, Ivask A.

J Photochem Photobiol B. 2015 Jan;142:178-85. doi: 10.1016/j.jphotobiol.2014.12.010. Epub 2014 Dec 17.

PMID:
25545332
22.

TiO₂ nanowire dispersions in viscous polymer matrix: electrophoretic alignment and optical properties.

Šutka A, Saal K, Kisand V, Lõhmus R, Joost U, Timusk M.

Nanotechnology. 2014 Oct 17;25(41):415703. doi: 10.1088/0957-4484/25/41/415703. Epub 2014 Sep 24.

PMID:
25249192
23.

Abundances of tetracycline, sulphonamide and beta-lactam antibiotic resistance genes in conventional wastewater treatment plants (WWTPs) with different waste load.

Laht M, Karkman A, Voolaid V, Ritz C, Tenson T, Virta M, Kisand V.

PLoS One. 2014 Aug 1;9(8):e103705. doi: 10.1371/journal.pone.0103705. eCollection 2014.

24.

Size-dependent toxicity of silver nanoparticles to bacteria, yeast, algae, crustaceans and mammalian cells in vitro.

Ivask A, Kurvet I, Kasemets K, Blinova I, Aruoja V, Suppi S, Vija H, Käkinen A, Titma T, Heinlaan M, Visnapuu M, Koller D, Kisand V, Kahru A.

PLoS One. 2014 Jul 21;9(7):e102108. doi: 10.1371/journal.pone.0102108. eCollection 2014.

25.

From bacteria to piscivorous fish: estimates of whole-lake and component-specific metabolism with an ecosystem approach.

Cremona F, Kõiv T, Kisand V, Laas A, Zingel P, Agasild H, Feldmann T, Järvalt A, Nõges P, Nõges T.

PLoS One. 2014 Jul 11;9(7):e101845. doi: 10.1371/journal.pone.0101845. eCollection 2014.

26.

Dissolution of silver nanowires and nanospheres dictates their toxicity to Escherichia coli.

Visnapuu M, Joost U, Juganson K, Künnis-Beres K, Kahru A, Kisand V, Ivask A.

Biomed Res Int. 2013;2013:819252. doi: 10.1155/2013/819252. Epub 2013 Aug 20.

27.

Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools.

Kisand V, Lettieri T.

BMC Genomics. 2013 Apr 1;14:211. doi: 10.1186/1471-2164-14-211.

28.

Aeromonas and Pseudomonas species carriers of ampC FOX genes in aquatic environments.

Voolaid V, Tenson T, Kisand V.

Appl Environ Microbiol. 2013 Feb;79(3):1055-7. doi: 10.1128/AEM.03171-12. Epub 2012 Nov 30.

29.

Co-occurrence of resistance to different antibiotics among aquatic bacteria.

Voolaid V, Jõers A, Kisand V, Tenson T.

BMC Microbiol. 2012 Oct 2;12:225. doi: 10.1186/1471-2180-12-225.

30.

Phylogenetic and functional metagenomic profiling for assessing microbial biodiversity in environmental monitoring.

Kisand V, Valente A, Lahm A, Tanet G, Lettieri T.

PLoS One. 2012;7(8):e43630. doi: 10.1371/journal.pone.0043630. Epub 2012 Aug 27.

31.

Low seasonal variability in community composition of sediment bacteria in large and shallow lake.

Tšertova N, Kisand A, Tammert H, Kisand V.

Environ Microbiol Rep. 2011 Apr;3(2):270-7. doi: 10.1111/j.1758-2229.2010.00221.x. Epub 2010 Nov 8.

PMID:
23761260
32.

Resonant inelastic x-ray scattering and UV-VUV luminescence at the Be 1s edge in BeO.

Kikas A, Käämbre T, Kooser K, Kuusik I, Kisand V, Nõmmiste E, Kirm M, Feldbach E, Ivanov V, Pustovarov V, Martinson I.

J Phys Condens Matter. 2010 Sep 22;22(37):375505. doi: 10.1088/0953-8984/22/37/375505. Epub 2010 Aug 31.

PMID:
21403201
33.

Ciliates are the dominant grazers on pico- and nanoplankton in a shallow, naturally highly eutrophic lake.

Zingel P, Agasild H, Nõges T, Kisand V.

Microb Ecol. 2007 Jan;53(1):134-42. Epub 2006 Dec 22.

PMID:
17186145
34.

Abiotic and biotic factors regulating dynamics of bacterioplankton in a large shallow lake.

Kisand V, Nõges T.

FEMS Microbiol Ecol. 2004 Oct 1;50(1):51-62. doi: 10.1016/j.femsec.2004.05.009.

35.

Salinity as a structuring factor for the composition and performance of bacterioplankton degrading riverine DOC.

Langenheder S, Kisand V, Wikner J, Tranvik LJ.

FEMS Microbiol Ecol. 2003 Jul 1;45(2):189-202. doi: 10.1016/S0168-6496(03)00149-1.

37.

Limited resolution of 16S rDNA DGGE caused by melting properties and closely related DNA sequences.

Kisand V, Wikner J.

J Microbiol Methods. 2003 Aug;54(2):183-91.

PMID:
12782374
38.

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