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Upper versus lower airway microbiome and metagenome in children with cystic fibrosis and their correlation with lung inflammation.

Kirst ME, Baker D, Li E, Abu-Hasan M, Wang GP.

PLoS One. 2019 Sep 19;14(9):e0222323. doi: 10.1371/journal.pone.0222323. eCollection 2019.


Tobacco outlet density, neighbourhood stressors and smoking prevalence in Toronto, Canada.

Kirst M, Chaiton M, O'Campo P.

Health Place. 2019 Jul;58:102171. doi: 10.1016/j.healthplace.2019.102171. Epub 2019 Jul 23.


Genomic Prediction of Additive and Non-additive Effects Using Genetic Markers and Pedigrees.

de Almeida Filho JE, Guimarães JFR, Fonsceca E Silva F, Vilela de Resende MD, Muñoz P, Kirst M, de Resende Júnior MFR.

G3 (Bethesda). 2019 Aug 8;9(8):2739-2748. doi: 10.1534/g3.119.201004.


Evaluating same-source bias in the association between neighbourhood characteristics and depression in a community sample from Toronto, Canada.

Chum A, O'Campo P, Lachaud J, Fink N, Kirst M, Nisenbaum R.

Soc Psychiatry Psychiatr Epidemiol. 2019 Oct;54(10):1177-1187. doi: 10.1007/s00127-019-01718-6. Epub 2019 May 3.


Genomic Prediction of Autotetraploids; Influence of Relationship Matrices, Allele Dosage, and Continuous Genotyping Calls in Phenotype Prediction.

de Bem Oliveira I, Resende MFR Jr, Ferrão LFV, Amadeu RR, Endelman JB, Kirst M, Coelho ASG, Munoz PR.

G3 (Bethesda). 2019 Apr 9;9(4):1189-1198. doi: 10.1534/g3.119.400059.


Exome Resequencing Reveals Evolutionary History, Genomic Diversity, and Targets of Selection in the Conifers Pinus taeda and Pinus elliottii.

Acosta JJ, Fahrenkrog AM, Neves LG, Resende MFR, Dervinis C, Davis JM, Holliday JA, Kirst M.

Genome Biol Evol. 2019 Feb 1;11(2):508-520. doi: 10.1093/gbe/evz016.


Understanding the Complexity of Cold Tolerance in White Clover using Temperature Gradient Locations and a GWAS Approach.

Inostroza L, Bhakta M, Acuña H, Vásquez C, Ibáñez J, Tapia G, Mei W, Kirst M, Resende M, Munoz P.

Plant Genome. 2018 Nov;11(3). doi: 10.3835/plantgenome2017.11.0096.


The Generation of Integration: The Early Experience of Implementing Bundled Care in Ontario, Canada.

Embuldeniya G, Kirst M, Walker K, Wodchis WP.

Milbank Q. 2018 Dec;96(4):782-813. doi: 10.1111/1468-0009.12357. Epub 2018 Nov 12.


Independent and Joint-GWAS for growth traits in Eucalyptus by assembling genome-wide data for 3373 individuals across four breeding populations.

Müller BSF, de Almeida Filho JE, Lima BM, Garcia CC, Missiaggia A, Aguiar AM, Takahashi E, Kirst M, Gezan SA, Silva-Junior OB, Neves LG, Grattapaglia D.

New Phytol. 2019 Jan;221(2):818-833. doi: 10.1111/nph.15449. Epub 2018 Sep 25.


Genome-Wide Exon-Capture Approach Identifies Genetic Variants of Norway Spruce Genes Associated With Susceptibility to Heterobasidion parviporum Infection.

Mukrimin M, Kovalchuk A, Neves LG, Jaber EHA, Haapanen M, Kirst M, Asiegbu FO.

Front Plant Sci. 2018 Jun 12;9:793. doi: 10.3389/fpls.2018.00793. eCollection 2018.


Linking genome signatures of selection and adaptation in non-model plants: exploring potential and limitations in the angiosperm Amborella.

Hodel RG, Chandler LM, Fahrenkrog AM, Kirst M, Gitzendanner MA, Soltis DE, Soltis PS.

Curr Opin Plant Biol. 2018 Apr;42:81-89. doi: 10.1016/j.pbi.2018.04.003. Epub 2018 Apr 27. Review.


Population genomics of the eastern cottonwood (Populus deltoides).

Fahrenkrog AM, Neves LG, Resende MFR Jr, Dervinis C, Davenport R, Barbazuk WB, Kirst M.

Ecol Evol. 2017 Oct 10;7(22):9426-9440. doi: 10.1002/ece3.3466. eCollection 2017 Nov.


Co-responding police-mental health programmes: Service user experiences and outcomes in a large urban centre.

Lamanna D, Shapiro GK, Kirst M, Matheson FI, Nakhost A, Stergiopoulos V.

Int J Ment Health Nurs. 2018 Apr;27(2):891-900. doi: 10.1111/inm.12384. Epub 2017 Oct 17.


What works in implementation of integrated care programs for older adults with complex needs? A realist review.

Kirst M, Im J, Burns T, Baker GR, Goldhar J, O'Campo P, Wojtak A, Wodchis WP.

Int J Qual Health Care. 2017 Oct 1;29(5):612-624. doi: 10.1093/intqhc/mzx095. Review.


Overexpression of DEMETER, a DNA demethylase, promotes early apical bud maturation in poplar.

Conde D, Moreno-Cortés A, Dervinis C, Ramos-Sánchez JM, Kirst M, Perales M, González-Melendi P, Allona I.

Plant Cell Environ. 2017 Nov;40(11):2806-2819. doi: 10.1111/pce.13056. Epub 2017 Oct 12.


Chilling-responsive DEMETER-LIKE DNA demethylase mediates in poplar bud break.

Conde D, Le Gac AL, Perales M, Dervinis C, Kirst M, Maury S, González-Melendi P, Allona I.

Plant Cell Environ. 2017 Oct;40(10):2236-2249. doi: 10.1111/pce.13019. Epub 2017 Aug 30.


Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus.

Müller BSF, Neves LG, de Almeida Filho JE, Resende MFR Jr, Muñoz PR, Dos Santos PET, Filho EP, Kirst M, Grattapaglia D.

BMC Genomics. 2017 Jul 11;18(1):524. doi: 10.1186/s12864-017-3920-2.


Effects of comorbid substance use disorders on outcomes in a Housing First intervention for homeless people with mental illness.

Urbanoski K, Veldhuizen S, Krausz M, Schutz C, Somers JM, Kirst M, Fleury MJ, Stergiopoulos V, Patterson M, Strehlau V, Goering P.

Addiction. 2018 Jan;113(1):137-145. doi: 10.1111/add.13928. Epub 2017 Aug 1.


SVIP regulates Z variant alpha-1 antitrypsin retro-translocation by inhibiting ubiquitin ligase gp78.

Khodayari N, Wang RL, Marek G, Krotova K, Kirst M, Liu C, Rouhani F, Brantly M.

PLoS One. 2017 Mar 16;12(3):e0172983. doi: 10.1371/journal.pone.0172983. eCollection 2017.


A chemical genetic roadmap to improved tomato flavor.

Tieman D, Zhu G, Resende MF Jr, Lin T, Nguyen C, Bies D, Rambla JL, Beltran KS, Taylor M, Zhang B, Ikeda H, Liu Z, Fisher J, Zemach I, Monforte A, Zamir D, Granell A, Kirst M, Huang S, Klee H.

Science. 2017 Jan 27;355(6323):391-394. doi: 10.1126/science.aal1556.


Addressing health inequities in Ontario, Canada: what solutions do the public support?

Kirst M, Shankardass K, Singhal S, Lofters A, Muntaner C, Quiñonez C.

BMC Public Health. 2017 Jan 5;17(1):7. doi: 10.1186/s12889-016-3932-x.


Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides.

Fahrenkrog AM, Neves LG, Resende MF Jr, Vazquez AI, de Los Campos G, Dervinis C, Sykes R, Davis M, Davenport R, Barbazuk WB, Kirst M.

New Phytol. 2017 Jan;213(2):799-811. doi: 10.1111/nph.14154. Epub 2016 Sep 6.


Transcription factor Bcl11b sustains iNKT1 and iNKT2 cell programs, restricts iNKT17 cell program, and governs iNKT cell survival.

Uddin MN, Sultana DA, Lorentsen KJ, Cho JJ, Kirst ME, Brantly ML, Califano D, Sant'Angelo DB, Avram D.

Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):7608-13. doi: 10.1073/pnas.1521846113. Epub 2016 Jun 21.


Client engagement in home and community care services: The client and care coordinator perspective.

Kirst M, Elmi A, Ray-Daniels M, Foster J.

Healthc Manage Forum. 2016 Jul;29(4):146-8. doi: 10.1177/0840470416644452. Epub 2016 Jun 6. Review.


Increased Proportion of Variance Explained and Prediction Accuracy of Survival of Breast Cancer Patients with Use of Whole-Genome Multiomic Profiles.

Vazquez AI, Veturi Y, Behring M, Shrestha S, Kirst M, Resende MF Jr, de Los Campos G.

Genetics. 2016 Jul;203(3):1425-38. doi: 10.1534/genetics.115.185181. Epub 2016 Apr 29.


The contribution of dominance to phenotype prediction in a pine breeding and simulated population.

de Almeida Filho JE, Guimarães JF, E Silva FF, de Resende MD, Muñoz P, Kirst M, Resende MF Jr.

Heredity (Edinb). 2016 Jul;117(1):33-41. doi: 10.1038/hdy.2016.23. Epub 2016 Apr 27.


Spatial genetic structure, genetic diversity and pollen dispersal in a harvested population of Astrocaryum aculeatum in the Brazilian Amazon.

Ramos SL, Dequigiovanni G, Sebbenn AM, Lopes MT, Kageyama PY, de Macêdo JL, Kirst M, Veasey EA.

BMC Genet. 2016 Apr 23;17(1):63. doi: 10.1186/s12863-016-0371-8.


A common public health-oriented policy framework for cannabis, alcohol and tobacco in Canada?

Kirst M, Kolar K, Chaiton M, Schwartz R, Emerson B, Hyshka E, Jesseman R, Lucas P, Solomon R, Thomas G.

Can J Public Health. 2016 Mar 16;106(8):e474-6. doi: 10.17269/cjph.106.5206.


Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus.

Ribeiro CL, Silva CM, Drost DR, Novaes E, Novaes CR, Dervinis C, Kirst M.

BMC Plant Biol. 2016 Mar 16;16:66. doi: 10.1186/s12870-016-0753-0.


Metabolic regulation of triacylglycerol accumulation in the green algae: identification of potential targets for engineering to improve oil yield.

Goncalves EC, Wilkie AC, Kirst M, Rathinasabapathi B.

Plant Biotechnol J. 2016 Aug;14(8):1649-60. doi: 10.1111/pbi.12523. Epub 2016 Jan 23. Review.


Understanding the role of Indigenous community participation in Indigenous prenatal and infant-toddler health promotion programs in Canada: A realist review.

Smylie J, Kirst M, McShane K, Firestone M, Wolfe S, O'Campo P.

Soc Sci Med. 2016 Feb;150:128-43. doi: 10.1016/j.socscimed.2015.12.019. Epub 2015 Dec 18. Review.


Examining implementation of mobile, police-mental health crisis intervention teams in a large urban center.

Kirst M, Francombe Pridham K, Narrandes R, Matheson F, Young L, Niedra K, Stergiopoulos V.

J Ment Health. 2015 Dec;24(6):369-74. doi: 10.3109/09638237.2015.1036970. Epub 2015 Sep 18.


Genetical genomics of Populus leaf shape variation.

Drost DR, Puranik S, Novaes E, Novaes CR, Dervinis C, Gailing O, Kirst M.

BMC Plant Biol. 2015 Jun 30;15:166. doi: 10.1186/s12870-015-0557-7.


A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of Pinus taeda.

Westbrook JW, Chhatre VE, Wu LS, Chamala S, Neves LG, Muñoz P, Martínez-García PJ, Neale DB, Kirst M, Mockaitis K, Nelson CD, Peter GF, Davis JM, Echt CS.

G3 (Bethesda). 2015 Jun 11;5(8):1685-94. doi: 10.1534/g3.115.019588.


The effects of social capital and neighborhood characteristics on intimate partner violence: a consideration of social resources and risks.

Kirst M, Lazgare LP, Zhang YJ, O'Campo P.

Am J Community Psychol. 2015 Jun;55(3-4):314-25. doi: 10.1007/s10464-015-9716-0.


Collaboration and involvement of persons with lived experience in planning Canada's At Home/Chez Soi project.

Nelson G, Macnaughton E, Curwood SE, Egalité N, Voronka J, Fleury MJ, Kirst M, Flowers L, Patterson M, Dudley M, Piat M, Goering P.

Health Soc Care Community. 2016 Mar;24(2):184-93. doi: 10.1111/hsc.12197. Epub 2015 Feb 17.


Life changes among homeless persons with mental illness: a longitudinal study of housing first and usual treatment.

Nelson G, Patterson M, Kirst M, Macnaughton E, Isaak CA, Nolin D, McAll C, Stergiopoulos V, Townley G, MacLeod T, Piat M, Goering PN.

Psychiatr Serv. 2015 Jun;66(6):592-7. doi: 10.1176/ Epub 2015 Feb 17.


The impact of a Housing First randomized controlled trial on substance use problems among homeless individuals with mental illness.

Kirst M, Zerger S, Misir V, Hwang S, Stergiopoulos V.

Drug Alcohol Depend. 2015 Jan 1;146:24-9. doi: 10.1016/j.drugalcdep.2014.10.019. Epub 2014 Oct 28.


Dysbiosis and alterations in predicted functions of the subgingival microbiome in chronic periodontitis.

Kirst ME, Li EC, Alfant B, Chi YY, Walker C, Magnusson I, Wang GP.

Appl Environ Microbiol. 2015 Jan;81(2):783-93. doi: 10.1128/AEM.02712-14. Epub 2014 Nov 14.


Unraveling additive from nonadditive effects using genomic relationship matrices.

Muñoz PR, Resende MF Jr, Gezan SA, Resende MD, de Los Campos G, Kirst M, Huber D, Peter GF.

Genetics. 2014 Dec;198(4):1759-68. doi: 10.1534/genetics.114.171322. Epub 2014 Oct 15.


Discovering candidate genes that regulate resin canal number in Pinus taeda stems by integrating genetic analysis across environments, ages, and populations.

Westbrook JW, Walker AR, Neves LG, Munoz P, Resende MF Jr, Neale DB, Wegrzyn JL, Huber DA, Kirst M, Davis JM, Peter GF.

New Phytol. 2015 Jan;205(2):627-41. doi: 10.1111/nph.13074. Epub 2014 Sep 30.


Co-responding Police-Mental Health Programs: A Review.

Shapiro GK, Cusi A, Kirst M, O'Campo P, Nakhost A, Stergiopoulos V.

Adm Policy Ment Health. 2015 Sep;42(5):606-20. doi: 10.1007/s10488-014-0594-9. Review.


Predictors of substance use among young adults transitioning away from high school: a narrative review.

Kirst M, Mecredy G, Borland T, Chaiton M.

Subst Use Misuse. 2014 Nov;49(13):1795-807. doi: 10.3109/10826084.2014.933240. Epub 2014 Jul 17. Review.


Patterns of cigarillo use among Canadian young adults in two urban settings.

Yates EA, Dubray J, Schwartz R, Kirst M, Lacombe-Duncan A, Suwal J, Hatcher J.

Can J Public Health. 2014 Jan 6;105(1):e11-4.


The promise of recovery: narratives of hope among homeless individuals with mental illness participating in a Housing First randomised controlled trial in Toronto, Canada.

Kirst M, Zerger S, Wise Harris D, Plenert E, Stergiopoulos V.

BMJ Open. 2014 Mar 3;4(3):e004379. doi: 10.1136/bmjopen-2013-004379.


How do people attribute income-related inequalities in health? A cross-sectional study in Ontario, Canada.

Lofters A, Slater M, Kirst M, Shankardass K, Quiñonez C.

PLoS One. 2014 Jan 13;9(1):e85286. doi: 10.1371/journal.pone.0085286. eCollection 2014.


The co-use of tobacco and cannabis among adolescents over a 30-year period.

Webster L, Chaiton M, Kirst M.

J Sch Health. 2014 Mar;84(3):151-9. doi: 10.1111/josh.12137.


A high-density gene map of loblolly pine (Pinus taeda L.) based on exome sequence capture genotyping.

Neves LG, Davis JM, Barbazuk WB, Kirst M.

G3 (Bethesda). 2014 Jan 10;4(1):29-37. doi: 10.1534/g3.113.008714.


Sociodemographic data collection for health equity measurement: a mixed methods study examining public opinions.

Kirst M, Shankardass K, Bomze S, Lofters A, Quiñonez C.

Int J Equity Health. 2013 Aug 30;12:75. doi: 10.1186/1475-9276-12-75.


Deep sequencing analysis of HCV NS3 resistance-associated variants and mutation linkage in liver transplant recipients.

Kirst ME, Li EC, Wang CX, Dong HJ, Liu C, Fried MW, Nelson DR, Wang GP.

PLoS One. 2013 Jul 29;8(7):e69698. doi: 10.1371/journal.pone.0069698. Print 2013.

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