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Items: 15

1.

Characterization of the First "Candidatus Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria.

Kitzinger K, Koch H, L├╝cker S, Sedlacek CJ, Herbold C, Schwarz J, Daebeler A, Mueller AJ, Lukumbuzya M, Romano S, Leisch N, Karst SM, Kirkegaard R, Albertsen M, Nielsen PH, Wagner M, Daims H.

MBio. 2018 Jul 10;9(4). pii: e01186-18. doi: 10.1128/mBio.01186-18.

2.

Novel prosthecate bacteria from the candidate phylum Acetothermia.

Hao L, McIlroy SJ, Kirkegaard RH, Karst SM, Fernando WEY, Aslan H, Meyer RL, Albertsen M, Nielsen PH, Dueholm MS.

ISME J. 2018 Sep;12(9):2225-2237. doi: 10.1038/s41396-018-0187-9. Epub 2018 Jun 8.

3.

Genomic and in Situ Analyses Reveal the Micropruina spp. as Abundant Fermentative Glycogen Accumulating Organisms in Enhanced Biological Phosphorus Removal Systems.

McIlroy SJ, Onetto CA, McIlroy B, Herbst FA, Dueholm MS, Kirkegaard RH, Fernando E, Karst SM, Nierychlo M, Kristensen JM, Eales KL, Grbin PR, Wimmer R, Nielsen PH.

Front Microbiol. 2018 May 23;9:1004. doi: 10.3389/fmicb.2018.01004. eCollection 2018.

4.

Cultivation and Genomic Analysis of "Candidatus Nitrosocaldus islandicus," an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland.

Daebeler A, Herbold CW, Vierheilig J, Sedlacek CJ, Pjevac P, Albertsen M, Kirkegaard RH, de la Torre JR, Daims H, Wagner M.

Front Microbiol. 2018 Feb 14;9:193. doi: 10.3389/fmicb.2018.00193. eCollection 2018.

5.

Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.

Karst SM, Dueholm MS, McIlroy SJ, Kirkegaard RH, Nielsen PH, Albertsen M.

Nat Biotechnol. 2018 Feb;36(2):190-195. doi: 10.1038/nbt.4045. Epub 2018 Jan 1.

PMID:
29291348
6.

The impact of immigration on microbial community composition in full-scale anaerobic digesters.

Kirkegaard RH, McIlroy SJ, Kristensen JM, Nierychlo M, Karst SM, Dueholm MS, Albertsen M, Nielsen PH.

Sci Rep. 2017 Aug 24;7(1):9343. doi: 10.1038/s41598-017-09303-0.

7.

Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge.

McIlroy SJ, Kirkegaard RH, Dueholm MS, Fernando E, Karst SM, Albertsen M, Nielsen PH.

Front Microbiol. 2017 Jun 23;8:1134. doi: 10.3389/fmicb.2017.01134. eCollection 2017.

8.

MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups.

McIlroy SJ, Kirkegaard RH, McIlroy B, Nierychlo M, Kristensen JM, Karst SM, Albertsen M, Nielsen PH.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax016.

9.

Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions.

Law Y, Kirkegaard RH, Cokro AA, Liu X, Arumugam K, Xie C, Stokholm-Bjerregaard M, Drautz-Moses DI, Nielsen PH, Wuertz S, Williams RB.

Sci Rep. 2016 May 19;6:25719. doi: 10.1038/srep25719.

10.

Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters.

Kirkegaard RH, Dueholm MS, McIlroy SJ, Nierychlo M, Karst SM, Albertsen M, Nielsen PH.

ISME J. 2016 Oct;10(10):2352-64. doi: 10.1038/ismej.2016.43. Epub 2016 Apr 8.

11.

Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge.

McIlroy SJ, Karst SM, Nierychlo M, Dueholm MS, Albertsen M, Kirkegaard RH, Seviour RJ, Nielsen PH.

ISME J. 2016 Sep;10(9):2223-34. doi: 10.1038/ismej.2016.14. Epub 2016 Feb 23.

12.

Complete nitrification by Nitrospira bacteria.

Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M, Jehmlich N, Palatinszky M, Vierheilig J, Bulaev A, Kirkegaard RH, von Bergen M, Rattei T, Bendinger B, Nielsen PH, Wagner M.

Nature. 2015 Dec 24;528(7583):504-9. doi: 10.1038/nature16461. Epub 2015 Nov 26.

13.

Back to Basics--The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities.

Albertsen M, Karst SM, Ziegler AS, Kirkegaard RH, Nielsen PH.

PLoS One. 2015 Jul 16;10(7):e0132783. doi: 10.1371/journal.pone.0132783. eCollection 2015.

14.

Facilitation of robust growth of Prochlorococcus colonies and dilute liquid cultures by "helper" heterotrophic bacteria.

Morris JJ, Kirkegaard R, Szul MJ, Johnson ZI, Zinser ER.

Appl Environ Microbiol. 2008 Jul;74(14):4530-4. doi: 10.1128/AEM.02479-07. Epub 2008 May 23.

15.

Laminar flow chamber for continuous monitoring of biofilm formation and succession.

Zinn MS, Kirkegaard RD, Palmer RJ Jr, White DC.

Methods Enzymol. 1999;310:224-32. No abstract available.

PMID:
10547796

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