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Items: 1 to 50 of 260

1.

Characterising 'bounce-back' readmissions after radical cystectomy.

Kirk PS, Skolarus TA, Jacobs BL, Qin Y, Li B, Sessine M, Liu X, Zhu K, Gilbert SM, Hollenbeck BK, Urish K, Helm J, Lavieri MS, Borza T.

BJU Int. 2019 Jul 17. doi: 10.1111/bju.14874. [Epub ahead of print]

PMID:
31313473
2.

Plasma membrane-associated receptor like kinases relocalize to plasmodesmata in response to osmotic stress.

Grison M, Kirk P, Brault M, Wu XN, Schulze WX, Benitez-Alfonso Y, Immel F, Bayer EMF.

Plant Physiol. 2019 Jul 12. pii: pp.00473.2019. doi: 10.1104/pp.19.00473. [Epub ahead of print]

3.

European mushroom assemblages are darker in cold climates.

Krah FS, Büntgen U, Schaefer H, Müller J, Andrew C, Boddy L, Diez J, Egli S, Freckleton R, Gange AC, Halvorsen R, Heegaard E, Heideroth A, Heibl C, Heilmann-Clausen J, Høiland K, Kar R, Kauserud H, Kirk PM, Kuyper TW, Krisai-Greilhuber I, Norden J, Papastefanou P, Senn-Irlet B, Bässler C.

Nat Commun. 2019 Jun 28;10(1):2890. doi: 10.1038/s41467-019-10767-z.

4.

A Bioconductor workflow for the Bayesian analysis of spatial proteomics.

Crook OM, Breckels LM, Lilley KS, Kirk PDW, Gatto L.

F1000Res. 2019 Apr 11;8:446. doi: 10.12688/f1000research.18636.1. eCollection 2019.

5.

Open-source data reveal how collections-based fungal diversity is sensitive to global change.

Andrew C, Büntgen U, Egli S, Senn-Irlet B, Grytnes JA, Heilmann-Clausen J, Boddy L, Bässler C, Gange AC, Heegaard E, Høiland K, Kirk PM, Krisai-Greilhüber I, Kuyper TW, Kauserud H.

Appl Plant Sci. 2019 Mar 12;7(3):e01227. doi: 10.1002/aps3.1227. eCollection 2019 Mar.

6.

Diversity of Chroogomphus (Gomphidiaceae, Boletales) in Europe, and typification of C. rutilus.

Scambler R, Niskanen T, Assyov B, Ainsworth AM, Bellanger JM, Loizides M, Moreau PA, Kirk PM, Liimatainen K.

IMA Fungus. 2018 Jul;9:271-290. doi: 10.5598/imafungus.2018.09.02.04. Epub 2018 Sep 5.

7.

Potential Savings in Medicare Part D for Common Urological Conditions.

Kirk PS, Borza T, Dupree JM, Wei JT, Ellimoottil C, Caram MEV, Burkhardt M, Heidelbaugh JJ, Hollenbeck BK, Skolarus TA.

Urol Pract. 2018 Sep;5(5):351-359. doi: 10.1016/j.urpr.2017.07.004.

PMID:
30555855
8.

Role of Post-Acute Care on Hospital Readmission After High-Risk Surgery.

Lee AJ, Liu X, Borza T, Qin Y, Li BY, Urish KL, Kirk PS, Gilbert S, Hollenbeck BK, Helm JE, Lavieri MS, Skolarus TA, Jacobs BL.

J Surg Res. 2019 Feb;234:116-122. doi: 10.1016/j.jss.2018.08.053. Epub 2018 Oct 6.

PMID:
30527462
9.

A Bayesian mixture modelling approach for spatial proteomics.

Crook OM, Mulvey CM, Kirk PDW, Lilley KS, Gatto L.

PLoS Comput Biol. 2018 Nov 27;14(11):e1006516. doi: 10.1371/journal.pcbi.1006516. eCollection 2018 Nov.

10.

Callose-Regulated Symplastic Communication Coordinates Symbiotic Root Nodule Development.

Gaudioso-Pedraza R, Beck M, Frances L, Kirk P, Ripodas C, Niebel A, Oldroyd GED, Benitez-Alfonso Y, de Carvalho-Niebel F.

Curr Biol. 2018 Nov 19;28(22):3562-3577.e6. doi: 10.1016/j.cub.2018.09.031. Epub 2018 Nov 8.

11.

Characterising potential bone scan overuse amongst men treated with radical prostatectomy.

Kirk PS, Borza T, Caram MEV, Shumway DA, Makarov DV, Burns JA, Shelton JB, Leppert JT, Chapman C, Chang M, Hollenbeck BK, Skolarus TA.

BJU Int. 2019 Jul;124(1):55-61. doi: 10.1111/bju.14551. Epub 2018 Nov 12.

PMID:
30246937
12.

Identifying and naming the currently known diversity of the genus Hydnum, with an emphasis on European and North American taxa.

Niskanen T, Liimatainen K, Nuytinck J, Kirk P, Ibarguren IO, Garibay-Orijel R, Norvell L, Huhtinen S, Kytövuori I, Ruotsalainen J, Niemelä T, Ammirati JF, Tedersoo L.

Mycologia. 2018 Sep-Oct;110(5):890-918. doi: 10.1080/00275514.2018.1477004. Epub 2018 Sep 14.

PMID:
30215579
13.

Population Analysis of Male Urethral Stricture Management and Urethroplasty Success in the United States.

Benson CR, Goldfarb R, Kirk P, Qin Y, Borza T, Skolarus TA, B Brandes S.

Urology. 2019 Jan;123:258-264. doi: 10.1016/j.urology.2018.06.059. Epub 2018 Aug 28.

PMID:
30170091
14.

Protax-fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences.

Abarenkov K, Somervuo P, Nilsson RH, Kirk PM, Huotari T, Abrego N, Ovaskainen O.

New Phytol. 2018 Oct;220(2):517-525. doi: 10.1111/nph.15301. Epub 2018 Jul 23.

PMID:
30035303
15.

Sequence-based nomenclature: a reply to Thines et al. and Zamora et al. and provisions for an amended proposal "from the floor" to allow DNA sequences as types of names.

Lücking R, Kirk PM, Hawksworth DL.

IMA Fungus. 2018 Jun;9(1):185-198. doi: 10.5598/imafungus.2018.09.01.12. Epub 2018 Jun 11.

16.

Predictors and Cost of Readmission in Total Knee Arthroplasty.

Urish KL, Qin Y, Li BY, Borza T, Sessine M, Kirk P, Hollenbeck BK, Helm JE, Lavieri MS, Skolarus TA, Jacobs BL.

J Arthroplasty. 2018 Sep;33(9):2759-2763. doi: 10.1016/j.arth.2018.04.008. Epub 2018 Apr 17.

PMID:
29753618
17.

The Receipt of Industry Payments is Associated With Prescribing Promoted Alpha-blockers and Overactive Bladder Medications.

Modi PK, Wang Y, Kirk PS, Dupree JM, Singer EA, Chang SL.

Urology. 2018 Jul;117:50-56. doi: 10.1016/j.urology.2018.04.008. Epub 2018 Apr 20.

18.

Explaining European fungal fruiting phenology with climate variability.

Andrew C, Heegaard E, Høiland K, Senn-Irlet B, Kuyper TW, Krisai-Greilhuber I, Kirk PM, Heilmann-Clausen J, Gange AC, Egli S, Bässler C, Büntgen U, Boddy L, Kauserud H.

Ecology. 2018 Jun;99(6):1306-1315. doi: 10.1002/ecy.2237. Epub 2018 May 8.

PMID:
29655179
19.

The effects of cystoscopy and hydrodistention on symptoms and bladder capacity in interstitial cystitis/bladder pain syndrome.

Kirk PS, Santiago-Lastra Y, Qin Y, Stoffel JT, Clemens JQ, Cameron AP.

Neurourol Urodyn. 2018 Aug;37(6):2002-2007. doi: 10.1002/nau.23555. Epub 2018 Mar 22.

PMID:
29566264
20.

The implications of baseline bone-health assessment at initiation of androgen-deprivation therapy for prostate cancer.

Kirk PS, Borza T, Shahinian VB, Caram MEV, Makarov DV, Shelton JB, Leppert JT, Blake RM, Davis JA, Hollenbeck BK, Sales A, Skolarus TA.

BJU Int. 2018 Apr;121(4):558-564. doi: 10.1111/bju.14075. Epub 2017 Nov 28.

21.

Breastfeeding Outcomes in Washington State: Determining the Effect of Loving Support Peer Counseling Program and Characteristics of Participants at WIC Agencies.

Lee CHM, O'Leary J, Kirk P, Lower TA.

J Nutr Educ Behav. 2018 Apr;50(4):379-387.e1. doi: 10.1016/j.jneb.2017.09.002. Epub 2017 Oct 19.

PMID:
29056310
22.

Emerging models on the regulation of intercellular transport by plasmodesmata-associated callose.

Amsbury S, Kirk P, Benitez-Alfonso Y.

J Exp Bot. 2017 Dec 18;69(1):105-115. doi: 10.1093/jxb/erx337. Review.

23.

Modeling the receptor pharmacology, pharmacokinetics, and pharmacodynamics of NKTR-214, a kinetically-controlled interleukin-2 (IL2) receptor agonist for cancer immunotherapy.

Charych D, Khalili S, Dixit V, Kirk P, Chang T, Langowski J, Rubas W, Doberstein SK, Eldon M, Hoch U, Zalevsky J.

PLoS One. 2017 Jul 5;12(7):e0179431. doi: 10.1371/journal.pone.0179431. eCollection 2017.

24.

Accurate detection of low prevalence AKT1 E17K mutation in tissue or plasma from advanced cancer patients.

de Bruin EC, Whiteley JL, Corcoran C, Kirk PM, Fox JC, Armisen J, Lindemann JPO, Schiavon G, Ambrose HJ, Kohlmann A.

PLoS One. 2017 May 4;12(5):e0175779. doi: 10.1371/journal.pone.0175779. eCollection 2017.

25.

A Comprehensive Evaluation of Nasal and Bronchial Cytokines and Chemokines Following Experimental Rhinovirus Infection in Allergic Asthma: Increased Interferons (IFN-γ and IFN-λ) and Type 2 Inflammation (IL-5 and IL-13).

Hansel TT, Tunstall T, Trujillo-Torralbo MB, Shamji B, Del-Rosario A, Dhariwal J, Kirk PDW, Stumpf MPH, Koopmann J, Telcian A, Aniscenko J, Gogsadze L, Bakhsoliani E, Stanciu L, Bartlett N, Edwards M, Walton R, Mallia P, Hunt TM, Hunt TL, Hunt DG, Westwick J, Edwards M, Kon OM, Jackson DJ, Johnston SL.

EBioMedicine. 2017 May;19:128-138. doi: 10.1016/j.ebiom.2017.03.033. Epub 2017 Mar 28.

26.

Post-mortem study of the association between cardiac iron and fibrosis in transfusion dependent anaemia.

Kirk P, Sheppard M, Carpenter JP, Anderson L, He T, St Pierre T, Galanello R, Catani G, Wood J, Fucharoen S, Porter JB, Walker JM, Forni GL, Pennell DJ.

J Cardiovasc Magn Reson. 2017 Mar 27;19(1):36. doi: 10.1186/s12968-017-0349-3.

27.

Implications of Prostate Cancer Treatment in Men With Inflammatory Bowel Disease.

Kirk PS, Govani S, Borza T, Hollenbeck BK, Davis J, Shumway D, Waljee AK, Skolarus TA.

Urology. 2017 Jun;104:131-136. doi: 10.1016/j.urology.2017.01.030. Epub 2017 Feb 3.

28.

Predictors of operative failure in parathyroidectomy for primary hyperparathyroidism.

Cron DC, Kapeles SR, Andraska EA, Kwon ST, Kirk PS, McNeish BL, Lee CS, Hughes DT.

Am J Surg. 2017 Sep;214(3):509-514. doi: 10.1016/j.amjsurg.2017.01.012. Epub 2017 Jan 10.

PMID:
28108069
29.

Retroviruses integrate into a shared, non-palindromic DNA motif.

Kirk PD, Huvet M, Melamed A, Maertens GN, Bangham CR.

Nat Microbiol. 2016 Nov 14;2:16212. doi: 10.1038/nmicrobiol.2016.212.

30.

Sequence-based classification and identification of Fungi.

Hibbett D, Abarenkov K, Kõljalg U, Öpik M, Chai B, Cole J, Wang Q, Crous P, Robert V, Helgason T, Herr JR, Kirk P, Lueschow S, O'Donnell K, Nilsson RH, Oono R, Schoch C, Smyth C, Walker DM, Porras-Alfaro A, Taylor JW, Geiser DM.

Mycologia. 2016 Nov/Dec;108(6):1049-1068. doi: 10.3852/16-130. Review.

PMID:
27760854
31.

Beauveria medogensis sp. nov., a new fungus of the entomopathogenic genus from China.

Imoulan A, Wu HJ, Lu WL, Li Y, Li BB, Yang RH, Wang WJ, Wang XL, Kirk PM, Yao YJ.

J Invertebr Pathol. 2016 Sep;139:74-81. doi: 10.1016/j.jip.2016.07.006. Epub 2016 Jul 19.

PMID:
27449678
32.

Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling.

Filippi S, Barnes CP, Kirk PD, Kudo T, Kunida K, McMahon SS, Tsuchiya T, Wada T, Kuroda S, Stumpf MP.

Cell Rep. 2016 Jun 14;15(11):2524-35. doi: 10.1016/j.celrep.2016.05.024. Epub 2016 Jun 2.

33.

Diversity of patient profile, urethral stricture, and other disease manifestations in a cohort of adult men with lichen sclerosus.

Kirk PS, Yi Y, Hadj-Moussa M, Malaeb BS.

Investig Clin Urol. 2016 May;57(3):202-7. doi: 10.4111/icu.2016.57.3.202. Epub 2016 May 10.

34.

MEANS: python package for Moment Expansion Approximation, iNference and Simulation.

Fan S, Geissmann Q, Lakatos E, Lukauskas S, Ale A, Babtie AC, Kirk PD, Stumpf MP.

Bioinformatics. 2016 Sep 15;32(18):2863-5. doi: 10.1093/bioinformatics/btw229. Epub 2016 May 5.

35.

A graph theoretical approach to data fusion.

Žurauskienė J, Kirk PD, Stumpf MP.

Stat Appl Genet Mol Biol. 2016 Apr;15(2):107-22. doi: 10.1515/sagmb-2016-0016.

36.

MDI-GPU: accelerating integrative modelling for genomic-scale data using GP-GPU computing.

Mason SA, Sayyid F, Kirk PD, Starr C, Wild DL.

Stat Appl Genet Mol Biol. 2016 Mar;15(1):83-6. doi: 10.1515/sagmb-2015-0055.

PMID:
26910751
37.

A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank).

Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P.

Zookeys. 2016 Jan 7;(550):233-46. doi: 10.3897/zookeys.550.9551. eCollection 2016.

38.

NKTR-214, an Engineered Cytokine with Biased IL2 Receptor Binding, Increased Tumor Exposure, and Marked Efficacy in Mouse Tumor Models.

Charych DH, Hoch U, Langowski JL, Lee SR, Addepalli MK, Kirk PB, Sheng D, Liu X, Sims PW, VanderVeen LA, Ali CF, Chang TK, Konakova M, Pena RL, Kanhere RS, Kirksey YM, Ji C, Wang Y, Huang J, Sweeney TD, Kantak SS, Doberstein SK.

Clin Cancer Res. 2016 Feb 1;22(3):680-90. doi: 10.1158/1078-0432.CCR-15-1631.

39.

Recommended names for pleomorphic genera in Dothideomycetes.

Rossman AY, Crous PW, Hyde KD, Hawksworth DL, Aptroot A, Bezerra JL, Bhat JD, Boehm E, Braun U, Boonmee S, Camporesi E, Chomnunti P, Dai DQ, D'souza MJ, Dissanayake A, Gareth Jones EB, Groenewald JZ, Hernández-Restrepo M, Hongsanan S, Jaklitsch WM, Jayawardena R, Jing LW, Kirk PM, Lawrey JD, Mapook A, McKenzie EH, Monkai J, Phillips AJ, Phookamsak R, Raja HA, Seifert KA, Senanayake I, Slippers B, Suetrong S, Taylor JE, Thambugala KM, Tian Q, Tibpromma S, Wanasinghe DN, Wijayawardene NN, Wikee S, Woudenberg JH, Wu HX, Yan J, Yang T, Zhang Y.

IMA Fungus. 2015 Dec;6(2):507-23. doi: 10.5598/imafungus.2015.06.02.14. Epub 2015 Dec 2.

40.

SYSTEMS BIOLOGY. Systems biology (un)certainties.

Kirk PD, Babtie AC, Stumpf MP.

Science. 2015 Oct 23;350(6259):386-8. doi: 10.1126/science.aac9505. No abstract available.

PMID:
26494748
41.

PESI - a taxonomic backbone for Europe.

de Jong Y, Kouwenberg J, Boumans L, Hussey C, Hyam R, Nicolson N, Kirk P, Paton A, Michel E, Guiry MD, Boegh PS, Pedersen HÆ, Enghoff H, von Raab-Straube E, Güntsch A, Geoffroy M, Müller A, Kohlbecker A, Berendsohn W, Appeltans W, Arvanitidis C, Vanhoorne B, Declerck J, Vandepitte L, Hernandez F, Nash R, Costello MJ, Ouvrard D, Bezard-Falgas P, Bourgoin T, Wetzel FT, Glöckler F, Korb G, Ring C, Hagedorn G, Häuser C, Aktaç N, Asan A, Ardelean A, Borges PA, Dhora D, Khachatryan H, Malicky M, Ibrahimov S, Tuzikov A, De Wever A, Moncheva S, Spassov N, Chobot K, Popov A, Boršić I, Sfenthourakis S, Kõljalg U, Uotila P, Olivier G, Dauvin JC, Tarkhnishvili D, Chaladze G, Tuerkay M, Legakis A, Peregovits L, Gudmundsson G, Ólafsson E, Lysaght L, Galil BS, Raimondo FM, Domina G, Stoch F, Minelli A, Spungis V, Budrys E, Olenin S, Turpel A, Walisch T, Krpach V, Gambin MT, Ungureanu L, Karaman G, Kleukers RM, Stur E, Aagaard K, Valland N, Moen TL, Bogdanowicz W, Tykarski P, Węsławski JM, Kędra M, M de Frias Martins A, Abreu AD, Silva R, Medvedev S, Ryss A, Šimić S, Marhold K, Stloukal E, Tome D, Ramos MA, Valdés B, Pina F, Kullander S, Telenius A, Gonseth Y, Tschudin P, Sergeyeva O, Vladymyrov V, Rizun VB, Raper C, Lear D, Stoev P, Penev L, Rubio AC, Backeljau T, Saarenmaa H, Ulenberg S.

Biodivers Data J. 2015 Sep 28;(3):e5848. doi: 10.3897/BDJ.3.e5848. eCollection 2015.

42.

Cellular population dynamics control the robustness of the stem cell niche.

MacLean AL, Kirk PD, Stumpf MP.

Biol Open. 2015 Oct 9;4(11):1420-6. doi: 10.1242/bio.013714.

43.

Multivariate moment closure techniques for stochastic kinetic models.

Lakatos E, Ale A, Kirk PD, Stumpf MP.

J Chem Phys. 2015 Sep 7;143(9):094107. doi: 10.1063/1.4929837.

44.

Use the PDSA model for effective change management.

Donnelly P, Kirk P.

Educ Prim Care. 2015 Jul;26(4):279-81. No abstract available.

PMID:
26253069
45.

Correction: A Higher Level Classification of All Living Organisms.

Ruggiero MA, Gordon DP, Orrell TM, Bailly N, Bourgoin T, Brusca RC, Cavalier-Smith T, Guiry MD, Kirk PM.

PLoS One. 2015 Jun 11;10(6):e0130114. doi: 10.1371/journal.pone.0130114. eCollection 2015. No abstract available.

46.

One-year postoperative resource utilization in sarcopenic patients.

Kirk PS, Friedman JF, Cron DC, Terjimanian MN, Wang SC, Campbell DA, Englesbe MJ, Werner NL.

J Surg Res. 2015 Nov;199(1):51-5. doi: 10.1016/j.jss.2015.04.074. Epub 2015 Apr 30.

47.

A higher level classification of all living organisms.

Ruggiero MA, Gordon DP, Orrell TM, Bailly N, Bourgoin T, Brusca RC, Cavalier-Smith T, Guiry MD, Kirk PM.

PLoS One. 2015 Apr 29;10(4):e0119248. doi: 10.1371/journal.pone.0119248. eCollection 2015. Erratum in: PLoS One. 2015;10(6):e0130114.

48.

Phosphorelay of non-orthodox two component systems functions through a bi-molecular mechanism in vivo: the case of ArcB.

Jovanovic G, Sheng X, Ale A, Feliu E, Harrington HA, Kirk P, Wiuf C, Buck M, Stumpf MP.

Mol Biosyst. 2015 May;11(5):1348-59. doi: 10.1039/c4mb00720d.

PMID:
25797699
49.

Topological sensitivity analysis for systems biology.

Babtie AC, Kirk P, Stumpf MP.

Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18507-12. doi: 10.1073/pnas.1414026112. Epub 2014 Dec 15.

50.

SYSBIONS: nested sampling for systems biology.

Johnson R, Kirk P, Stumpf MP.

Bioinformatics. 2015 Feb 15;31(4):604-5. doi: 10.1093/bioinformatics/btu675. Epub 2014 Oct 16.

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