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Training attention in children with acquired brain injury: a study protocol of a randomised controlled trial of the TALI attention training programme.

McKay E, Richmond S, Kirk H, Anderson V, Catroppa C, Cornish K.

BMJ Open. 2019 Dec 4;9(12):e032619. doi: 10.1136/bmjopen-2019-032619.


Gamified Attention Training in the Primary School Classroom: A Cluster-Randomized Controlled Trial.

Kirk HE, Spencer-Smith M, Wiley JF, Cornish KM.

J Atten Disord. 2019 Nov 13:1087054719887435. doi: 10.1177/1087054719887435. [Epub ahead of print]


Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA.

Haile S, Corbett RD, Bilobram S, Mungall K, Grande BM, Kirk H, Pandoh P, MacLeod T, McDonald H, Bala M, Coope RJ, Moore RA, Mungall AJ, Zhao Y, Morin RD, Jones SJ, Marra MA.

PLoS One. 2019 Oct 31;14(10):e0224578. doi: 10.1371/journal.pone.0224578. eCollection 2019.


Shearwaters know the direction and distance home but fail to encode intervening obstacles after free-ranging foraging trips.

Padget O, Stanley G, Willis JK, Fayet AL, Bond S, Maurice L, Shoji A, Dean B, Kirk H, Juarez-Martinez I, Freeman R, Bolton M, Guilford T.

Proc Natl Acad Sci U S A. 2019 Oct 22;116(43):21629-21633. doi: 10.1073/pnas.1903829116. Epub 2019 Oct 7.


A phase II trial of cabazitaxel as second line chemotherapy in relapsed locally advanced and/or metastatic carcinoma of the penis.

Challapalli A, Pearson S, Mitra AV, Coe M, Thomson A, Elliott T, Kirkbride P, Pickering L, Kirk H, Foulstone E, Evans H, Bravo A, Bahl AK.

J Int Med Res. 2019 Oct;47(10):4664-4672. doi: 10.1177/0300060519863546. Epub 2019 Sep 10. No abstract available.


The Genome of the Steller Sea Lion (Eumetopias jubatus).

Kwan HH, Culibrk L, Taylor GA, Leelakumari S, Tan R, Jackman SD, Tse K, MacLeod T, Cheng D, Chuah E, Kirk H, Pandoh P, Carlsen R, Zhao Y, Mungall AJ, Moore R, Birol I, Marra MA, Rosen DAS, Haulena M, Jones SJM.

Genes (Basel). 2019 Jun 26;10(7). pii: E486. doi: 10.3390/genes10070486.


Complete Chloroplast Genome Sequence of an Engelmann Spruce (Picea engelmannii, Genotype Se404-851) from Western Canada.

Lin D, Coombe L, Jackman SD, Gagalova KK, Warren RL, Hammond SA, McDonald H, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Doerksen T, Jaquish B, Bousquet J, Jones SJM, Bohlmann J, Birol I.

Microbiol Resour Announc. 2019 Jun 13;8(24). pii: e00382-19. doi: 10.1128/MRA.00382-19.


Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada.

Lin D, Coombe L, Jackman SD, Gagalova KK, Warren RL, Hammond SA, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Jaquish B, Isabel N, Bousquet J, Jones SJM, Bohlmann J, Birol I.

Microbiol Resour Announc. 2019 Jun 6;8(23). pii: e00381-19. doi: 10.1128/MRA.00381-19.


De Novo Sequencing, Assembly, and Annotation of Four Threespine Stickleback Genomes Based on Microfluidic Partitioned DNA Libraries.

Berner D, Roesti M, Bilobram S, Chan SK, Kirk H, Pandoh P, Taylor GA, Zhao Y, Jones SJM, DeFaveri J.

Genes (Basel). 2019 Jun 3;10(6). pii: E426. doi: 10.3390/genes10060426.


A high-throughput protocol for isolating cell-free circulating tumor DNA from peripheral blood.

Pandoh PK, Corbett RD, McDonald H, Alcaide M, Kirk H, Trinh E, Haile S, MacLeod T, Smailus D, Bilobram S, Mungall AJ, Ma Y, Moore RA, Coope R, Zhao Y, Jones SJ, Holt RA, Karsan A, Morin RD, Marra MA.

Biotechniques. 2019 Feb;66(2):85-92. doi: 10.2144/btn-2018-0148.


The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis.

Taylor GA, Kirk H, Coombe L, Jackman SD, Chu J, Tse K, Cheng D, Chuah E, Pandoh P, Carlsen R, Zhao Y, Mungall AJ, Moore R, Birol I, Franke M, Marra MA, Dutton C, Jones SJM.

Genes (Basel). 2018 Nov 30;9(12). pii: E598. doi: 10.3390/genes9120598.


Sequence variants in muscle tissue-related genes may determine the severity of muscle contractures in cerebral palsy.

Pingel J, Andersen JD, Christiansen SL, Børsting C, Morling N, Lorentzen J, Kirk H, Doessing S, Wong C, Nielsen JB.

Am J Med Genet B Neuropsychiatr Genet. 2019 Jan;180(1):12-24. doi: 10.1002/ajmg.b.32693. Epub 2018 Nov 23.


Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples.

Haile S, Corbett RD, Bilobram S, Bye MH, Kirk H, Pandoh P, Trinh E, MacLeod T, McDonald H, Bala M, Miller D, Novik K, Coope RJ, Moore RA, Zhao Y, Mungall AJ, Ma Y, Holt RA, Jones SJ, Marra MA.

Nucleic Acids Res. 2019 Jan 25;47(2):e12. doi: 10.1093/nar/gky1142.


Impaired Ability to Suppress Excitability of Antagonist Motoneurons at Onset of Dorsiflexion in Adults with Cerebral Palsy.

Geertsen SS, Kirk H, Nielsen JB.

Neural Plast. 2018 Oct 9;2018:1265143. doi: 10.1155/2018/1265143. eCollection 2018.


The Value of Expanding the Training Population to Improve Genomic Selection Models in Tetraploid Potato.

Sverrisdóttir E, Sundmark EHR, Johnsen HØ, Kirk HG, Asp T, Janss L, Bryan G, Nielsen KL.

Front Plant Sci. 2018 Aug 6;9:1118. doi: 10.3389/fpls.2018.01118. eCollection 2018.


Spasticity in adults with cerebral palsy and multiple sclerosis measured by objective clinically applicable technique.

Yamaguchi T, Hvass Petersen T, Kirk H, Forman C, Svane C, Kofoed-Hansen M, Boesen F, Lorentzen J.

Clin Neurophysiol. 2018 Sep;129(9):2010-2021. doi: 10.1016/j.clinph.2018.07.004. Epub 2018 Jul 24.


Achieving socially significant reductions in problem behavior following the interview-informed synthesized contingency analysis: A summary of 25 outpatient applications.

Jessel J, Ingvarsson ET, Metras R, Kirk H, Whipple R.

J Appl Behav Anal. 2018 Jan;51(1):130-157. doi: 10.1002/jaba.436. Epub 2018 Jan 10.


The Genome of the Beluga Whale (Delphinapterus leucas).

Jones SJM, Taylor GA, Chan S, Warren RL, Hammond SA, Bilobram S, Mordecai G, Suttle CA, Miller KM, Schulze A, Chan AM, Jones SJ, Tse K, Li I, Cheung D, Mungall KL, Choo C, Ally A, Dhalla N, Tam AKY, Troussard A, Kirk H, Pandoh P, Paulino D, Coope RJN, Mungall AJ, Moore R, Zhao Y, Birol I, Ma Y, Marra M, Haulena M.

Genes (Basel). 2017 Dec 11;8(12). pii: E378. doi: 10.3390/genes8120378.


The Genome of the Northern Sea Otter (Enhydra lutris kenyoni).

Jones SJ, Haulena M, Taylor GA, Chan S, Bilobram S, Warren RL, Hammond SA, Mungall KL, Choo C, Kirk H, Pandoh P, Ally A, Dhalla N, Tam AKY, Troussard A, Paulino D, Coope RJN, Mungall AJ, Moore R, Zhao Y, Birol I, Ma Y, Marra M, Jones SJM.

Genes (Basel). 2017 Dec 11;8(12). pii: E379. doi: 10.3390/genes8120379.


The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA.

Hammond SA, Warren RL, Vandervalk BP, Kucuk E, Khan H, Gibb EA, Pandoh P, Kirk H, Zhao Y, Jones M, Mungall AJ, Coope R, Pleasance S, Moore RA, Holt RA, Round JM, Ohora S, Walle BV, Veldhoen N, Helbing CC, Birol I.

Nat Commun. 2017 Nov 10;8(1):1433. doi: 10.1038/s41467-017-01316-7.


Contribution of sensory feedback to plantar flexor muscle activation during push-off in adults with cerebral palsy.

Frisk RF, Jensen P, Kirk H, Bouyer LJ, Lorentzen J, Nielsen JB.

J Neurophysiol. 2017 Dec 1;118(6):3165-3174. doi: 10.1152/jn.00508.2017. Epub 2017 Sep 13.


Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing.

Sverrisdóttir E, Byrne S, Sundmark EHR, Johnsen HØ, Kirk HG, Asp T, Janss L, Nielsen KL.

Theor Appl Genet. 2017 Oct;130(10):2091-2108. doi: 10.1007/s00122-017-2944-y. Epub 2017 Jul 13.


Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing.

Haile S, Corbett RD, MacLeod T, Bilobram S, Smailus D, Tsao P, Kirk H, McDonald H, Pandoh P, Bala M, Hirst M, Miller D, Moore RA, Mungall AJ, Schein J, Coope RJ, Ma Y, Zhao Y, Holt RA, Jones SJ, Marra MA.

BMC Genomics. 2017 Jul 5;18(1):515. doi: 10.1186/s12864-017-3900-6.


Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis.

Haile S, Pandoh P, McDonald H, Corbett RD, Tsao P, Kirk H, MacLeod T, Jones M, Bilobram S, Brooks D, Smailus D, Steidl C, Scott DW, Bala M, Hirst M, Miller D, Moore RA, Mungall AJ, Coope RJ, Ma Y, Zhao Y, Holt RA, Jones SJ, Marra MA.

PLoS One. 2017 Jun 1;12(6):e0178706. doi: 10.1371/journal.pone.0178706. eCollection 2017.


Impact of Attention Training on Academic Achievement, Executive Functioning, and Behavior: A Randomized Controlled Trial.

Kirk H, Gray K, Ellis K, Taffe J, Cornish K.

Am J Intellect Dev Disabil. 2017 Mar;122(2):97-117. doi: 10.1352/1944-7558-122.2.97.


Carry-over effects on the annual cycle of a migratory seabird: an experimental study.

Fayet AL, Freeman R, Shoji A, Kirk HL, Padget O, Perrins CM, Guilford T.

J Anim Ecol. 2016 Nov;85(6):1516-1527. doi: 10.1111/1365-2656.12580. Epub 2016 Aug 31.


Visual attention and academic performance in children with developmental disabilities and behavioural attention deficits.

Kirk HE, Gray K, Riby DM, Taffe J, Cornish KM.

Dev Sci. 2017 Nov;20(6). doi: 10.1111/desc.12468. Epub 2016 Sep 21.


Computerised attention training for children with intellectual and developmental disabilities: a randomised controlled trial.

Kirk HE, Gray KM, Ellis K, Taffe J, Cornish KM.

J Child Psychol Psychiatry. 2016 Dec;57(12):1380-1389. doi: 10.1111/jcpp.12615. Epub 2016 Aug 23.


Drivers and fitness consequences of dispersive migration in a pelagic seabird.

Fayet AL, Freeman R, Shoji A, Boyle D, Kirk HL, Dean BJ, Perrins CM, Guilford T.

Behav Ecol. 2016 Jul-Aug;27(4):1061-1072. Epub 2016 Feb 17.


Treadmill training with an incline reduces ankle joint stiffness and improves active range of movement during gait in adults with cerebral palsy.

Lorentzen J, Kirk H, Fernandez-Lago H, Frisk R, Scharff Nielsen N, Jorsal M, Nielsen JB.

Disabil Rehabil. 2017 May;39(10):987-993. doi: 10.1080/09638288.2016.1174745. Epub 2016 May 30.


Foraging flexibility and search patterns are unlinked during breeding in a free-ranging seabird.

Shoji A, Aris-Brosou S, Owen E, Bolton M, Boyle D, Fayet A, Dean B, Kirk H, Freeman R, Perrins C, Guilford T.

Mar Biol. 2016;163:72. Epub 2016 Mar 14.


Explosive Resistance Training Increases Rate of Force Development in Ankle Dorsiflexors and Gait Function in Adults With Cerebral Palsy.

Kirk H, Geertsen SS, Lorentzen J, Krarup KB, Bandholm T, Nielsen JB.

J Strength Cond Res. 2016 Oct;30(10):2749-60. doi: 10.1519/JSC.0000000000001376.


Breeding phenology and winter activity predict subsequent breeding success in a trans-global migratory seabird.

Shoji A, Aris-Brosou S, Culina A, Fayet A, Kirk H, Padget O, Juarez-Martinez I, Boyle D, Nakata T, Perrins CM, Guilford T.

Biol Lett. 2015 Oct;11(10). pii: 20150671. doi: 10.1098/rsbl.2015.0671.


Violations of Personal Space in Young People with Autism Spectrum Disorders and Williams Syndrome: Insights from the Social Responsiveness Scale.

Lough E, Hanley M, Rodgers J, South M, Kirk H, Kennedy DP, Riby DM.

J Autism Dev Disord. 2015 Dec;45(12):4101-8. doi: 10.1007/s10803-015-2536-0.


Cytosolic glutamine synthetase is important for photosynthetic efficiency and water use efficiency in potato as revealed by high-throughput sequencing QTL analysis.

Kaminski KP, Kørup K, Andersen MN, Sønderkær M, Andersen MS, Kirk HG, Nielsen KL.

Theor Appl Genet. 2015 Nov;128(11):2143-53. doi: 10.1007/s00122-015-2573-2. Epub 2015 Jul 12.


Early triaging using the Modified Early Warning Score (MEWS) and dedicated emergency teams leads to improved clinical outcomes in acute emergencies.

Patel A, Hassan S, Ullah A, Hamid T, Kirk H.

Clin Med (Lond). 2015 Jun;15 Suppl 3:s3. doi: 10.7861/clinmedicine.15-3-s3. Epub 2015 May 29. No abstract available.


Impaired gait function in adults with cerebral palsy is associated with reduced rapid force generation and increased passive stiffness.

Geertsen SS, Kirk H, Lorentzen J, Jorsal M, Johansson CB, Nielsen JB.

Clin Neurophysiol. 2015 Dec;126(12):2320-9. doi: 10.1016/j.clinph.2015.02.005. Epub 2015 Feb 21.


Cognitive training as a resolution for early executive function difficulties in children with intellectual disabilities.

Kirk HE, Gray K, Riby DM, Cornish KM.

Res Dev Disabil. 2015 Mar;38:145-60. doi: 10.1016/j.ridd.2014.12.026. Epub 2015 Jan 2. Review.


Herbivory and floral signaling: phenotypic plasticity and tradeoffs between reproduction and indirect defense.

Schiestl FP, Kirk H, Bigler L, Cozzolino S, Desurmont GA.

New Phytol. 2014 Jul;203(1):257-66. doi: 10.1111/nph.12783. Epub 2014 Mar 28.


Linking social behaviour and anxiety to attention to emotional faces in Williams syndrome.

Kirk HE, Hocking DR, Riby DM, Cornish KM.

Res Dev Disabil. 2013 Dec;34(12):4608-16. doi: 10.1016/j.ridd.2013.09.042. Epub 2013 Oct 24.


The interplay between anxiety and social functioning in Williams syndrome.

Riby DM, Hanley M, Kirk H, Clark F, Little K, Fleck R, Janes E, Kelso L, O'Kane F, Cole-Fletcher R, Allday MH, Hocking D, Cornish K, Rodgers J.

J Autism Dev Disord. 2014 May;44(5):1220-9. doi: 10.1007/s10803-013-1984-7.


Gait profiles as indicators of domain-specific impairments in executive control across neurodevelopmental disorders.

Hocking DR, Menant JC, Kirk HE, Lord S, Porter MA.

Res Dev Disabil. 2014 Jan;35(1):203-14. doi: 10.1016/j.ridd.2013.10.005. Epub 2013 Oct 28.


The cardiac model of rehabilitation for reducing cardiovascular risk factors post transient ischaemic attack and stroke: a randomized controlled trial.

Kirk H, Kersten P, Crawford P, Keens A, Ashburn A, Conway J.

Clin Rehabil. 2014 Apr;28(4):339-49. doi: 10.1177/0269215513502211. Epub 2013 Oct 11.


Stranger danger awareness in Williams syndrome.

Riby DM, Kirk H, Hanley M, Riby LM.

J Intellect Disabil Res. 2014 Jun;58(6):572-82. doi: 10.1111/jir.12055. Epub 2013 May 29.


Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.

Birol I, Raymond A, Jackman SD, Pleasance S, Coope R, Taylor GA, Yuen MM, Keeling CI, Brand D, Vandervalk BP, Kirk H, Pandoh P, Moore RA, Zhao Y, Mungall AJ, Jaquish B, Yanchuk A, Ritland C, Boyle B, Bousquet J, Ritland K, Mackay J, Bohlmann J, Jones SJ.

Bioinformatics. 2013 Jun 15;29(12):1492-7. doi: 10.1093/bioinformatics/btt178. Epub 2013 May 22.


Predictive ethoinformatics reveals the complex migratory behaviour of a pelagic seabird, the Manx Shearwater.

Freeman R, Dean B, Kirk H, Leonard K, Phillips RA, Perrins CM, Guilford T.

J R Soc Interface. 2013 May 1;10(84):20130279. doi: 10.1098/rsif.2013.0279. Print 2013 Jul 6.


Molecular genetics and genomics generate new insights into invertebrate pest invasions.

Kirk H, Dorn S, Mazzi D.

Evol Appl. 2013 Apr 24;6(5):842-856. doi: 10.1111/eva.12071. eCollection 2013 Jul.


A qualitative study exploring patients' experiences of standard care or cardiac rehabilitation post minor stroke and transient ischaemic attack.

Hillsdon KM, Kersten P, Kirk HJ.

Clin Rehabil. 2013 Sep;27(9):845-53. doi: 10.1177/0269215513478956. Epub 2013 Mar 29.


Worldwide population genetic structure of the oriental fruit moth (Grapholita molesta), a globally invasive pest.

Kirk H, Dorn S, Mazzi D.

BMC Ecol. 2013 Mar 25;13:12. doi: 10.1186/1472-6785-13-12.


Safety and efficacy of minimally-invasive parathyroidectomy (MIP) under local anaesthesia without intra-operative PTH measurement.

Rajeev P, Stechman MJ, Kirk H, Gleeson FV, Mihai R, Sadler GP.

Int J Surg. 2013;11(3):275-7. doi: 10.1016/j.ijsu.2013.02.002. Epub 2013 Feb 13.

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