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Items: 1 to 50 of 74

1.

Diversity of bacterial communities and dissolved organic matter in a temperate estuary.

Osterholz H, Kirchman DL, Niggemann J, Dittmar T.

FEMS Microbiol Ecol. 2018 Aug 1;94(8). doi: 10.1093/femsec/fiy119.

PMID:
29912327
2.

Microbial proteins for organic material degradation in the deep ocean.

Kirchman DL.

Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):445-447. doi: 10.1073/pnas.1720765115. Epub 2017 Dec 29. No abstract available.

3.

Marine microbial ecology: Life after volcanic destruction.

Kirchman DL.

Nat Ecol Evol. 2017 Apr 24;1(6):157. doi: 10.1038/s41559-017-0157. No abstract available.

PMID:
28812645
4.

Transcriptional Control in Marine Copiotrophic and Oligotrophic Bacteria with Streamlined Genomes.

Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2016 Sep 16;82(19):6010-8. doi: 10.1128/AEM.01299-16. Print 2016 Oct 1.

5.

Single-cell activity of freshwater aerobic anoxygenic phototrophic bacteria and their contribution to biomass production.

Garcia-Chaves MC, Cottrell MT, Kirchman DL, Ruiz-González C, Del Giorgio PA.

ISME J. 2016 Jul;10(7):1579-88. doi: 10.1038/ismej.2015.242. Epub 2016 Jan 15.

6.

Growth rates and rRNA content of four marine bacteria in pure cultures and in the Delaware estuary.

Lankiewicz TS, Cottrell MT, Kirchman DL.

ISME J. 2016 Apr;10(4):823-32. doi: 10.1038/ismej.2015.156. Epub 2015 Sep 22.

7.

Growth Rates of Microbes in the Oceans.

Kirchman DL.

Ann Rev Mar Sci. 2016;8:285-309. doi: 10.1146/annurev-marine-122414-033938. Epub 2015 Jul 17. Review.

PMID:
26195108
8.

Patterns in Abundance, Cell Size and Pigment Content of Aerobic Anoxygenic Phototrophic Bacteria along Environmental Gradients in Northern Lakes.

Fauteux L, Cottrell MT, Kirchman DL, Borrego CM, Garcia-Chaves MC, Del Giorgio PA.

PLoS One. 2015 Apr 30;10(4):e0124035. doi: 10.1371/journal.pone.0124035. eCollection 2015.

9.

Leucine incorporation by aerobic anoxygenic phototrophic bacteria in the Delaware estuary.

Stegman MR, Cottrell MT, Kirchman DL.

ISME J. 2014 Nov;8(11):2339-48. doi: 10.1038/ismej.2014.75. Epub 2014 May 13.

10.

Uptake of dissolved organic carbon by gammaproteobacterial subgroups in coastal waters of the West Antarctic Peninsula.

Nikrad MP, Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2014 Jun;80(11):3362-8. doi: 10.1128/AEM.00121-14. Epub 2014 Mar 21.

11.

Bacterial diversity in relatively pristine and anthropogenically-influenced mangrove ecosystems (Goa, India).

Fernandes SO, Kirchman DL, Michotey VD, Bonin PC, LokaBharathi PA.

Braz J Microbiol. 2015 Mar 4;45(4):1161-71. eCollection 2014.

12.

Growth activity of gammaproteobacterial subgroups in waters off the west Antarctic Peninsula in summer and fall.

Nikrad MP, Cottrell MT, Kirchman DL.

Environ Microbiol. 2014 Jun;16(6):1513-23. doi: 10.1111/1462-2920.12258. Epub 2013 Sep 30.

PMID:
24118807
13.

Phylogenetic and structural response of heterotrophic bacteria to dissolved organic matter of different chemical composition in a continuous culture study.

Landa M, Cottrell MT, Kirchman DL, Kaiser K, Medeiros PM, Tremblay L, Batailler N, Caparros J, Catala P, Escoubeyrou K, Oriol L, Blain S, Obernosterer I.

Environ Microbiol. 2014 Jun;16(6):1668-81. doi: 10.1111/1462-2920.12242. Epub 2013 Sep 10.

PMID:
24020678
14.

Bioenergetics of photoheterotrophic bacteria in the oceans.

Kirchman DL, Hanson TE.

Environ Microbiol Rep. 2013 Apr;5(2):188-99. doi: 10.1111/j.1758-2229.2012.00367.x. Epub 2012 Jul 24. Review.

PMID:
23584962
15.

Summer community structure of aerobic anoxygenic phototrophic bacteria in the western Arctic Ocean.

Boeuf D, Cottrell MT, Kirchman DL, Lebaron P, Jeanthon C.

FEMS Microbiol Ecol. 2013 Sep;85(3):417-32. doi: 10.1111/1574-6941.12130. Epub 2013 May 1.

16.

Microbial oceanography: Killers of the winners.

Kirchman DL.

Nature. 2013 Feb 21;494(7437):320-1. doi: 10.1038/nature11951. Epub 2013 Feb 13. No abstract available.

PMID:
23407493
17.

Arsenite modifies structure of soil microbial communities and arsenite oxidization potential.

Lami R, Jones LC, Cottrell MT, Lafferty BJ, Ginder-Vogel M, Sparks DL, Kirchman DL.

FEMS Microbiol Ecol. 2013 May;84(2):270-9. doi: 10.1111/1574-6941.12061. Epub 2013 Jan 8.

18.

Marine archaea take a short cut in the nitrogen cycle.

Kirchman DL.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17732-3. doi: 10.1073/pnas.1215654109. Epub 2012 Oct 16. No abstract available.

19.

Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient.

Campbell BJ, Kirchman DL.

ISME J. 2013 Jan;7(1):210-20. doi: 10.1038/ismej.2012.93. Epub 2012 Aug 16.

20.

Abundance and single-cell activity of heterotrophic bacterial groups in the western Arctic Ocean in summer and winter.

Nikrad MP, Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2012 Apr;78(7):2402-9. doi: 10.1128/AEM.07130-11. Epub 2012 Jan 27.

21.

Phylogenetic and functional diversity of Bacteria and Archaea in a unique stratified lagoon, the Clipperton atoll (N Pacific).

Galand PE, Bourrain M, De Maistre E, Catala P, Desdevises Y, Elifantz H, Kirchman DL, Lebaron P.

FEMS Microbiol Ecol. 2012 Jan;79(1):203-17. doi: 10.1111/j.1574-6941.2011.01209.x.

22.

Activity of abundant and rare bacteria in a coastal ocean.

Campbell BJ, Yu L, Heidelberg JF, Kirchman DL.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12776-81. doi: 10.1073/pnas.1101405108. Epub 2011 Jul 18.

23.

Effects of composition of labile organic matter on biogenic production of methane in the coastal sediments of the Arabian Sea.

Gonsalves MJ, Fernandes CE, Fernandes SO, Kirchman DL, Bharathi PA.

Environ Monit Assess. 2011 Nov;182(1-4):385-95. doi: 10.1007/s10661-011-1883-3. Epub 2011 Feb 12.

PMID:
21318266
24.

Abundance, diversity, and activity of ammonia-oxidizing prokaryotes in the coastal Arctic ocean in summer and winter.

Christman GD, Cottrell MT, Popp BN, Gier E, Kirchman DL.

Appl Environ Microbiol. 2011 Mar;77(6):2026-34. doi: 10.1128/AEM.01907-10. Epub 2011 Jan 14.

25.

Temporal study of Helicobacter pylori presence in coastal freshwater, estuary and marine waters.

Twing KI, Kirchman DL, Campbell BJ.

Water Res. 2011 Feb;45(4):1897-905. doi: 10.1016/j.watres.2010.12.013. Epub 2010 Dec 17.

PMID:
21193216
26.

Summer distribution and diversity of aerobic anoxygenic phototrophic bacteria in the Mediterranean Sea in relation to environmental variables.

Lehours AC, Cottrell MT, Dahan O, Kirchman DL, Jeanthon C.

FEMS Microbiol Ecol. 2010 Nov;74(2):397-409. doi: 10.1111/j.1574-6941.2010.00954.x. Epub 2010 Sep 7.

27.

Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean.

Jiao N, Herndl GJ, Hansell DA, Benner R, Kattner G, Wilhelm SW, Kirchman DL, Weinbauer MG, Luo T, Chen F, Azam F.

Nat Rev Microbiol. 2010 Aug;8(8):593-9. doi: 10.1038/nrmicro2386. Epub 2010 Jul 5. Review.

PMID:
20601964
28.

Bacteriochlorophyll and community structure of aerobic anoxygenic phototrophic bacteria in a particle-rich estuary.

Cottrell MT, Ras J, Kirchman DL.

ISME J. 2010 Jul;4(7):945-54. doi: 10.1038/ismej.2010.13. Epub 2010 Feb 25.

PMID:
20182527
29.

The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes.

Kirchman DL, Cottrell MT, Lovejoy C.

Environ Microbiol. 2010 May;12(5):1132-43. doi: 10.1111/j.1462-2920.2010.02154.x. Epub 2010 Feb 3.

PMID:
20132284
30.

Ecology of the rare microbial biosphere of the Arctic Ocean.

Galand PE, Casamayor EO, Kirchman DL, Lovejoy C.

Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22427-32. doi: 10.1073/pnas.0908284106. Epub 2009 Dec 17.

31.

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.

Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, Antonopoulos DA, Barott K, Cottrell MT, Desnues C, Dinsdale EA, Furlan M, Haynes M, Henn MR, Hu Y, Kirchman DL, McDole T, McPherson JD, Meyer F, Miller RM, Mundt E, Naviaux RK, Rodriguez-Mueller B, Stevens R, Wegley L, Zhang L, Zhu B, Rohwer F.

PLoS Comput Biol. 2009 Dec;5(12):e1000593. doi: 10.1371/journal.pcbi.1000593. Epub 2009 Dec 11.

32.

Light-dependent growth and proteorhodopsin expression by Flavobacteria and SAR11 in experiments with Delaware coastal waters.

Lami R, Cottrell MT, Campbell BJ, Kirchman DL.

Environ Microbiol. 2009 Dec;11(12):3201-9. doi: 10.1111/j.1462-2920.2009.02028.x. Epub 2009 Aug 18.

PMID:
19691506
33.

Photoheterotrophic microbes in the Arctic Ocean in summer and winter.

Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2009 Aug;75(15):4958-66. doi: 10.1128/AEM.00117-09. Epub 2009 Jun 5.

34.

Microbial growth in the polar oceans - role of temperature and potential impact of climate change.

Kirchman DL, Morán XA, Ducklow H.

Nat Rev Microbiol. 2009 Jun;7(6):451-9. doi: 10.1038/nrmicro2115. Review.

PMID:
19421189
35.

Geographic and phylogenetic variation in bacterial biovolume as revealed by protein and nucleic acid staining.

Straza TR, Cottrell MT, Ducklow HW, Kirchman DL.

Appl Environ Microbiol. 2009 Jun;75(12):4028-34. doi: 10.1128/AEM.00183-09. Epub 2009 Apr 17.

36.

Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing.

Galand PE, Casamayor EO, Kirchman DL, Potvin M, Lovejoy C.

ISME J. 2009 Jul;3(7):860-9. doi: 10.1038/ismej.2009.23. Epub 2009 Mar 26. Erratum in: ISME J. 2009 Sep;3(9):1116.

PMID:
19322244
37.

New light on an important microbe in the ocean.

Kirchman DL.

Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8487-8. doi: 10.1073/pnas.0804196105. Epub 2008 Jun 16. No abstract available.

38.

Diversity and distribution of ecotypes of the aerobic anoxygenic phototrophy gene pufM in the Delaware estuary.

Waidner LA, Kirchman DL.

Appl Environ Microbiol. 2008 Jul;74(13):4012-21. doi: 10.1128/AEM.02324-07. Epub 2008 May 9.

39.

Abundant proteorhodopsin genes in the North Atlantic Ocean.

Campbell BJ, Waidner LA, Cottrell MT, Kirchman DL.

Environ Microbiol. 2008 Jan;10(1):99-109. doi: 10.1111/j.1462-2920.2007.01436.x.

PMID:
18211270
40.

Diversity and abundance of glycosyl hydrolase family 5 in the North Atlantic Ocean.

Elifantz H, Waidner LA, Michelou VK, Cottrell MT, Kirchman DL.

FEMS Microbiol Ecol. 2008 Mar;63(3):316-27. doi: 10.1111/j.1574-6941.2007.00429.x. Epub 2008 Jan 5.

41.

Light-stimulated bacterial production and amino acid assimilation by cyanobacteria and other microbes in the North Atlantic ocean.

Michelou VK, Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2007 Sep;73(17):5539-46. Epub 2007 Jul 13.

42.

High abundances of aerobic anoxygenic photosynthetic bacteria in the South Pacific Ocean.

Lami R, Cottrell MT, Ras J, Ulloa O, Obernosterer I, Claustre H, Kirchman DL, Lebaron P.

Appl Environ Microbiol. 2007 Jul;73(13):4198-205. Epub 2007 May 11.

43.

Aerobic anoxygenic phototrophic bacteria attached to particles in turbid waters of the Delaware and Chesapeake estuaries.

Waidner LA, Kirchman DL.

Appl Environ Microbiol. 2007 Jun;73(12):3936-44. Epub 2007 Apr 27.

44.

Bacterial community structure of biofilms on artificial surfaces in an estuary.

Jones PR, Cottrell MT, Kirchman DL, Dexter SC.

Microb Ecol. 2007 Jan;53(1):153-62. Epub 2006 Dec 22.

PMID:
17186146
45.

Effects of naphthalene on microbial community composition in the Delaware estuary.

Castle DM, Montgomery MT, Kirchman DL.

FEMS Microbiol Ecol. 2006 Apr;56(1):55-63.

46.

Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre.

Cottrell MT, Mannino A, Kirchman DL.

Appl Environ Microbiol. 2006 Jan;72(1):557-64.

47.
48.

Assimilation of polysaccharides and glucose by major bacterial groups in the Delaware Estuary.

Elifantz H, Malmstrom RR, Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2005 Dec;71(12):7799-805.

49.

Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River.

Waidner LA, Kirchman DL.

Environ Microbiol. 2005 Dec;7(12):1896-908.

PMID:
16309388
50.

Bacterial diversity of metagenomic and PCR libraries from the Delaware River.

Cottrell MT, Waidner LA, Yu L, Kirchman DL.

Environ Microbiol. 2005 Dec;7(12):1883-95.

PMID:
16309387

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