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Items: 35

1.

A Transcription Factor Addiction in Leukemia Imposed by the MLL Promoter Sequence.

Lu B, Klingbeil O, Tarumoto Y, Somerville TDD, Huang YH, Wei Y, Wai DC, Low JKK, Milazzo JP, Wu XS, Cao Z, Yan X, Demerdash OE, Huang G, Mackay JP, Kinney JB, Shi J, Vakoc CR.

Cancer Cell. 2018 Dec 10;34(6):970-981.e8. doi: 10.1016/j.ccell.2018.10.015. Epub 2018 Nov 29.

PMID:
30503706
2.

Density Estimation on Small Data Sets.

Chen WC, Tareen A, Kinney JB.

Phys Rev Lett. 2018 Oct 19;121(16):160605. doi: 10.1103/PhysRevLett.121.160605.

PMID:
30387642
3.

Quantitative Activity Profile and Context Dependence of All Human 5' Splice Sites.

Wong MS, Kinney JB, Krainer AR.

Mol Cell. 2018 Sep 20;71(6):1012-1026.e3. doi: 10.1016/j.molcel.2018.07.033. Epub 2018 Aug 30.

PMID:
30174293
4.

Selection for Protein Stability Enriches for Epistatic Interactions.

Posfai A, Zhou J, Plotkin JB, Kinney JB, McCandlish DM.

Genes (Basel). 2018 Aug 21;9(9). pii: E423. doi: 10.3390/genes9090423.

5.

Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria.

Belliveau NM, Barnes SL, Ireland WT, Jones DL, Sweredoski MJ, Moradian A, Hess S, Kinney JB, Phillips R.

Proc Natl Acad Sci U S A. 2018 May 22;115(21):E4796-E4805. doi: 10.1073/pnas.1722055115. Epub 2018 May 4.

6.

Rapid generation of drug-resistance alleles at endogenous loci using CRISPR-Cas9 indel mutagenesis.

Ipsaro JJ, Shen C, Arai E, Xu Y, Kinney JB, Joshua-Tor L, Vakoc CR, Shi J.

PLoS One. 2017 Feb 23;12(2):e0172177. doi: 10.1371/journal.pone.0172177. eCollection 2017.

7.

Rapid and tunable method to temporally control gene editing based on conditional Cas9 stabilization.

Senturk S, Shirole NH, Nowak DG, Corbo V, Pal D, Vaughan A, Tuveson DA, Trotman LC, Kinney JB, Sordella R.

Nat Commun. 2017 Feb 22;8:14370. doi: 10.1038/ncomms14370.

8.

Geospatial analysis of suicidal bridge jumping in the Metro Vancouver Regional District from 2006 to 2014.

Lam VC, Kinney JB, Bell LS.

J Forensic Leg Med. 2017 Apr;47:1-8. doi: 10.1016/j.jflm.2017.01.006. Epub 2017 Jan 24.

PMID:
28160665
9.

Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves.

Adams RM, Mora T, Walczak AM, Kinney JB.

Elife. 2016 Dec 30;5. pii: e23156. doi: 10.7554/eLife.23156.

10.

Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression.

Sheu YJ, Kinney JB, Stillman B.

Genome Res. 2016 Mar;26(3):315-30. doi: 10.1101/gr.195248.115. Epub 2016 Jan 5.

11.

Unification of field theory and maximum entropy methods for learning probability densities.

Kinney JB.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Sep;92(3):032107. doi: 10.1103/PhysRevE.92.032107. Epub 2015 Sep 8.

PMID:
26465426
12.

Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains.

Shi J, Wang E, Milazzo JP, Wang Z, Kinney JB, Vakoc CR.

Nat Biotechnol. 2015 Jun;33(6):661-7. doi: 10.1038/nbt.3235. Epub 2015 May 11.

13.

The transcriptional cofactor TRIM33 prevents apoptosis in B lymphoblastic leukemia by deactivating a single enhancer.

Wang E, Kawaoka S, Roe JS, Shi J, Hohmann AF, Xu Y, Bhagwat AS, Suzuki Y, Kinney JB, Vakoc CR.

Elife. 2015 Apr 28;4:e06377. doi: 10.7554/eLife.06377.

14.

Reply to Reshef et al.: Falsifiability or bust.

Kinney JB, Atwal GS.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3364. No abstract available.

15.

Estimation of probability densities using scale-free field theories.

Kinney JB.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jul;90(1):011301. Epub 2014 Jul 11.

PMID:
25122244
16.

Reply to Murrell et al.: Noise matters.

Kinney JB, Atwal GS.

Proc Natl Acad Sci U S A. 2014 May 27;111(21):E2161. No abstract available.

17.

Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression.

Sheu YJ, Kinney JB, Lengronne A, Pasero P, Stillman B.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):E1899-908. doi: 10.1073/pnas.1404063111. Epub 2014 Apr 16.

18.

Comparison of the theoretical and real-world evolutionary potential of a genetic circuit.

Razo-Mejia M, Boedicker JQ, Jones D, DeLuna A, Kinney JB, Phillips R.

Phys Biol. 2014 Apr;11(2):026005. doi: 10.1088/1478-3975/11/2/026005. Epub 2014 Apr 1.

19.

Discovery and mode of action of afoxolaner, a new isoxazoline parasiticide for dogs.

Shoop WL, Hartline EJ, Gould BR, Waddell ME, McDowell RG, Kinney JB, Lahm GP, Long JK, Xu M, Wagerle T, Jones GS, Dietrich RF, Cordova D, Schroeder ME, Rhoades DF, Benner EA, Confalone PN.

Vet Parasitol. 2014 Apr 2;201(3-4):179-89. doi: 10.1016/j.vetpar.2014.02.020. Epub 2014 Mar 14.

20.

Equitability, mutual information, and the maximal information coefficient.

Kinney JB, Atwal GS.

Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3354-9. doi: 10.1073/pnas.1309933111. Epub 2014 Feb 18.

21.

Parametric inference in the large data limit using maximally informative models.

Kinney JB, Atwal GS.

Neural Comput. 2014 Apr;26(4):637-53. doi: 10.1162/NECO_a_00568. Epub 2014 Jan 30.

PMID:
24479782
22.

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay.

Melnikov A, Murugan A, Zhang X, Tesileanu T, Wang L, Rogov P, Feizi S, Gnirke A, Callan CG Jr, Kinney JB, Kellis M, Lander ES, Mikkelsen TS.

Nat Biotechnol. 2012 Feb 26;30(3):271-7. doi: 10.1038/nbt.2137.

23.

Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence.

Kinney JB, Murugan A, Callan CG Jr, Cox EC.

Proc Natl Acad Sci U S A. 2010 May 18;107(20):9158-63. doi: 10.1073/pnas.1004290107. Epub 2010 May 3.

24.

Evaluation of anomalous systemic and pulmonary venous return in a young child with heterotaxy: a case study--implications for military dependent care.

Kinney JB, Gilman MD, Bolt SL, Zenger DC, Belser C, Stillman CA, Sahn DJ.

Mil Med. 2008 Mar;173(3):324-7.

PMID:
18419039
25.

Precise physical models of protein-DNA interaction from high-throughput data.

Kinney JB, Tkacik G, Callan CG Jr.

Proc Natl Acad Sci U S A. 2007 Jan 9;104(2):501-6. Epub 2006 Dec 29.

26.

MRI of congenital heart disease: a paradigm of collaboration. new suggestions for a team approach from Madigan Army Medical Center.

Kinney JB, Rovira MJ, Sahn DJ, Lupinetti FM, Gilman MD, Wexler L.

J Cardiovasc Magn Reson. 2002;4(3):369-72. Review.

PMID:
12234108
27.

A novel approach to understanding a mysterious murmur in a young adult after surgical repair of tetralogy of Fallot.

Kinney JB Jr, Ho VB, Mizelle KM, Sahn DJ.

West J Med. 1998 Oct;169(4):230-1. No abstract available.

28.

Preoperative gadolinium-enhanced magnetic resonance pulmonary venography in an adolescent with atrial septal defect.

Eisenhauer MD, Kinney JB Jr, Ho VB, Sahn DJ, Braxton M, Peake J.

Mil Med. 1997 Sep;162(9):640-2. Erratum in: Mil Med 1997 Oct;162(10):preceding 643.

PMID:
9290303
29.

Contributions of newer MR imaging strategies for congenital heart disease.

Ho VB, Kinney JB, Sahn DJ.

Radiographics. 1996 Jan;16(1):43-60; discussion 61. Review.

PMID:
10946689
30.

Ruptured sinus of Valsalva aneurysm: cine phase-contrast MR characterization.

Ho VB, Kinney JB, Sahn DJ.

J Comput Assist Tomogr. 1995 Jul-Aug;19(4):652-6.

PMID:
7622705
31.

Quantitative perfusion imaging assessing acquired discrete peripheral pulmonary artery stenosis.

Kinney JB Jr, Schofield TD, Kawabori I, Budd SE, Bauman JM.

J Nucl Med. 1993 Nov;34(11):1995-7.

32.

Occult Kawasaki syndrome with giant coronary artery aneurysms.

Hinson RM, Schofield TD, French J, Stevenson JG, Stewart D, Kinney JB Jr.

West J Med. 1993 Feb;158(2):188-91. No abstract available.

33.

Atypical Kawasaki disease: coronary aneurysms and thrombocytopenia.

Kinney JB Jr, Albano E, Krober MS, Stevenson JG.

South Med J. 1992 Jan;85(1):40-2.

PMID:
1734535
34.

Severe intravascular hemolysis in an infant with cyanotic congenital heart disease: resolution of hemolysis after repair.

Kinney JB Jr, DeSantes K, Abelson HT, Stevenson JG.

J Pediatr. 1990 Dec;117(6):911-4. No abstract available.

PMID:
2246691
35.

Letter: Psychiatric disorder in military dependent children.

Schnitzler ER, Foley JD, Arenson EB Jr, Kinney JB Jr, Roberts FW.

J Pediatr. 1975 Sep;87(3):500-1. No abstract available.

PMID:
1165540

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