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Items: 1 to 50 of 206

1.

Phase separation of Polycomb-repressive complex 1 is governed by a charged disordered region of CBX2.

Plys AJ, Davis CP, Kim J, Rizki G, Keenen MM, Marr SK, Kingston RE.

Genes Dev. 2019 Jul 1;33(13-14):799-813. doi: 10.1101/gad.326488.119. Epub 2019 Jun 6.

PMID:
31171700
2.

A conserved genetic interaction between Spt6 and Set2 regulates H3K36 methylation.

Gopalakrishnan R, Marr SK, Kingston RE, Winston F.

Nucleic Acids Res. 2019 May 7;47(8):3888-3903. doi: 10.1093/nar/gkz119.

3.

Xist RNA antagonizes the SWI/SNF chromatin remodeler BRG1 on the inactive X chromosome.

Jégu T, Blum R, Cochrane JC, Yang L, Wang CY, Gilles ME, Colognori D, Szanto A, Marr SK, Kingston RE, Lee JT.

Nat Struct Mol Biol. 2019 Feb;26(2):96-109. doi: 10.1038/s41594-018-0176-8. Epub 2019 Jan 21.

4.

Dynamic condensates activate transcription.

Plys AJ, Kingston RE.

Science. 2018 Jul 27;361(6400):329-330. doi: 10.1126/science.aau4795. No abstract available.

PMID:
30049863
5.

Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation.

Kundu S, Ji F, Sunwoo H, Jain G, Lee JT, Sadreyev RI, Dekker J, Kingston RE.

Mol Cell. 2018 Jul 5;71(1):191. doi: 10.1016/j.molcel.2018.06.022. No abstract available.

6.

Beyond the Histone Code: A Physical Map of Chromatin States.

Tchasovnikarova IA, Kingston RE.

Mol Cell. 2018 Jan 4;69(1):5-7. doi: 10.1016/j.molcel.2017.12.018.

7.

Polycomb Repressive Complex 2 Methylates Elongin A to Regulate Transcription.

Ardehali MB, Anselmo A, Cochrane JC, Kundu S, Sadreyev RI, Kingston RE.

Mol Cell. 2017 Dec 7;68(5):872-884.e6. doi: 10.1016/j.molcel.2017.10.025. Epub 2017 Nov 16.

8.

Multitasking by Polycomb response elements.

Jaensch ES, Kundu S, Kingston RE.

Genes Dev. 2017 Jun 1;31(11):1069-1072. doi: 10.1101/gad.303206.117.

9.

Hyperactivation of HUSH complex function by Charcot-Marie-Tooth disease mutation in MORC2.

Tchasovnikarova IA, Timms RT, Douse CH, Roberts RC, Dougan G, Kingston RE, Modis Y, Lehner PJ.

Nat Genet. 2017 Jul;49(7):1035-1044. doi: 10.1038/ng.3878. Epub 2017 Jun 5.

10.

Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction.

Mueller B, Mieczkowski J, Kundu S, Wang P, Sadreyev R, Tolstorukov MY, Kingston RE.

Genes Dev. 2017 Mar 1;31(5):451-462. doi: 10.1101/gad.293118.116. Epub 2017 Mar 29.

11.

Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning.

Lau MS, Schwartz MG, Kundu S, Savol AJ, Wang PI, Marr SK, Grau DJ, Schorderet P, Sadreyev RI, Tabin CJ, Kingston RE.

Science. 2017 Mar 10;355(6329):1081-1084. doi: 10.1126/science.aah5403. Epub 2017 Mar 9.

12.

Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation.

Kundu S, Ji F, Sunwoo H, Jain G, Lee JT, Sadreyev RI, Dekker J, Kingston RE.

Mol Cell. 2017 Feb 2;65(3):432-446.e5. doi: 10.1016/j.molcel.2017.01.009. Erratum in: Mol Cell. 2018 Jul 5;71(1):191.

13.

Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination.

Pulivarthy SR, Lion M, Kuzu G, Matthews AG, Borowsky ML, Morris J, Kingston RE, Dennis JH, Tolstorukov MY, Oettinger MA.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):E6427-E6436. Epub 2016 Oct 3.

14.

A systematic review of the prevalence of comorbid mental health disorders in people presenting for substance use treatment in Australia.

Kingston REF, Marel C, Mills KL.

Drug Alcohol Rev. 2017 Jul;36(4):527-539. doi: 10.1111/dar.12448. Epub 2016 Oct 27. Review.

PMID:
27786426
15.

Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization.

West JA, Mito M, Kurosaka S, Takumi T, Tanegashima C, Chujo T, Yanaka K, Kingston RE, Hirose T, Bond C, Fox A, Nakagawa S.

J Cell Biol. 2016 Sep 26;214(7):817-30. doi: 10.1083/jcb.201601071. Epub 2016 Sep 19.

16.

CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development.

Ray MK, Wiskow O, King MJ, Ismail N, Ergun A, Wang Y, Plys AJ, Davis CP, Kathrein K, Sadreyev R, Borowsky ML, Eggan K, Zon L, Galloway JL, Kingston RE.

J Biol Chem. 2016 Sep 9;291(37):19558-72. doi: 10.1074/jbc.M116.730853. Epub 2016 Jul 12.

17.

Enhancer regions show high histone H3.3 turnover that changes during differentiation.

Deaton AM, Gómez-Rodríguez M, Mieczkowski J, Tolstorukov MY, Kundu S, Sadreyev RI, Jansen LE, Kingston RE.

Elife. 2016 Jun 15;5. pii: e15316. doi: 10.7554/eLife.15316.

18.

MNase titration reveals differences between nucleosome occupancy and chromatin accessibility.

Mieczkowski J, Cook A, Bowman SK, Mueller B, Alver BH, Kundu S, Deaton AM, Urban JA, Larschan E, Park PJ, Kingston RE, Tolstorukov MY.

Nat Commun. 2016 May 6;7:11485. doi: 10.1038/ncomms11485.

19.

Molecular Dissection of Chromatin Maturation via Click Chemistry.

Yildirim O, Kingston RE.

Curr Protoc Mol Biol. 2016 Apr 1;114:21.33.1-21.33.11. doi: 10.1002/0471142727.mb2133s114.

20.

Chromatin topology is coupled to Polycomb group protein subnuclear organization.

Wani AH, Boettiger AN, Schorderet P, Ergun A, Münger C, Sadreyev RI, Zhuang X, Kingston RE, Francis NJ.

Nat Commun. 2016 Jan 13;7:10291. doi: 10.1038/ncomms10291.

21.

Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling.

Cajigas I, Leib DE, Cochrane J, Luo H, Swyter KR, Chen S, Clark BS, Thompson J, Yates JR 3rd, Kingston RE, Kohtz JD.

Development. 2015 Aug 1;142(15):2641-52. doi: 10.1242/dev.126318. Epub 2015 Jul 2.

22.

BAF250a Protein Regulates Nucleosome Occupancy and Histone Modifications in Priming Embryonic Stem Cell Differentiation.

Lei I, West J, Yan Z, Gao X, Fang P, Dennis JH, Gnatovskiy L, Wang W, Kingston RE, Wang Z.

J Biol Chem. 2015 Jul 31;290(31):19343-52. doi: 10.1074/jbc.M115.637389. Epub 2015 Jun 12.

23.

Transcriptional regulation by trithorax-group proteins.

Kingston RE, Tamkun JW.

Cold Spring Harb Perspect Biol. 2014 Oct 1;6(10):a019349. doi: 10.1101/cshperspect.a019349. Review.

24.

Comparative analysis of metazoan chromatin organization.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ.

Nature. 2014 Aug 28;512(7515):449-52. doi: 10.1038/nature13415.

25.

Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming.

West JA, Cook A, Alver BH, Stadtfeld M, Deaton AM, Hochedlinger K, Park PJ, Tolstorukov MY, Kingston RE.

Nat Commun. 2014 Aug 27;5:4719. doi: 10.1038/ncomms5719.

26.

The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites.

West JA, Davis CP, Sunwoo H, Simon MD, Sadreyev RI, Wang PI, Tolstorukov MY, Kingston RE.

Mol Cell. 2014 Sep 4;55(5):791-802. doi: 10.1016/j.molcel.2014.07.012. Epub 2014 Aug 21.

27.

H3K27 modifications define segmental regulatory domains in the Drosophila bithorax complex.

Bowman SK, Deaton AM, Domingues H, Wang PI, Sadreyev RI, Kingston RE, Bender W.

Elife. 2014 Jul 31;3:e02833. doi: 10.7554/eLife.02833.

28.

A chromatin-dependent role of the fragile X mental retardation protein FMRP in the DNA damage response.

Alpatov R, Lesch BJ, Nakamoto-Kinoshita M, Blanco A, Chen S, Stützer A, Armache KJ, Simon MD, Xu C, Ali M, Murn J, Prisic S, Kutateladze TG, Vakoc CR, Min J, Kingston RE, Fischle W, Warren ST, Page DC, Shi Y.

Cell. 2014 May 8;157(4):869-81. doi: 10.1016/j.cell.2014.03.040.

29.

The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed.

Sexton BS, Avey D, Druliner BR, Fincher JA, Vera DL, Grau DJ, Borowsky ML, Gupta S, Girimurugan SB, Chicken E, Zhang J, Noble WS, Zhu F, Kingston RE, Dennis JH.

Genome Res. 2014 Feb;24(2):251-9. doi: 10.1101/gr.160150.113. Epub 2013 Dec 5.

30.

High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation.

Simon MD, Pinter SF, Fang R, Sarma K, Rutenberg-Schoenberg M, Bowman SK, Kesner BA, Maier VK, Kingston RE, Lee JT.

Nature. 2013 Dec 19;504(7480):465-469. doi: 10.1038/nature12719. Epub 2013 Oct 27.

31.

Assembly, remodelled.

Bouazoune K, Kingston RE.

Elife. 2013 Aug 20;2:e01270. doi: 10.7554/eLife.01270.

32.

Multiplexed Illumina sequencing libraries from picogram quantities of DNA.

Bowman SK, Simon MD, Deaton AM, Tolstorukov M, Borowsky ML, Kingston RE.

BMC Genomics. 2013 Jul 9;14:466. doi: 10.1186/1471-2164-14-466.

33.

Variable requirements for DNA-binding proteins at polycomb-dependent repressive regions in human HOX clusters.

Woo CJ, Kharchenko PV, Daheron L, Park PJ, Kingston RE.

Mol Cell Biol. 2013 Aug;33(16):3274-85. doi: 10.1128/MCB.00275-13. Epub 2013 Jun 17.

34.

DAF-16 employs the chromatin remodeller SWI/SNF to promote stress resistance and longevity.

Riedel CG, Dowen RH, Lourenco GF, Kirienko NV, Heimbucher T, West JA, Bowman SK, Kingston RE, Dillin A, Asara JM, Ruvkun G.

Nat Cell Biol. 2013 May;15(5):491-501. doi: 10.1038/ncb2720. Epub 2013 Apr 21.

35.

Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put.

Simon JA, Kingston RE.

Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013. Review.

36.

LSD2/KDM1B and its cofactor NPAC/GLYR1 endow a structural and molecular model for regulation of H3K4 demethylation.

Fang R, Chen F, Dong Z, Hu D, Barbera AJ, Clark EA, Fang J, Yang Y, Mei P, Rutenberg M, Li Z, Zhang Y, Xu Y, Yang H, Wang P, Simon MD, Zhou Q, Li J, Marynick MP, Li X, Lu H, Kaiser UB, Kingston RE, Xu Y, Shi YG.

Mol Cell. 2013 Feb 7;49(3):558-70. doi: 10.1016/j.molcel.2012.11.019. Epub 2012 Dec 20.

37.

Chromatin remodeling by the CHD7 protein is impaired by mutations that cause human developmental disorders.

Bouazoune K, Kingston RE.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19238-43. doi: 10.1073/pnas.1213825109. Epub 2012 Nov 7.

38.

Histone variant H2A.Bbd is associated with active transcription and mRNA processing in human cells.

Tolstorukov MY, Goldman JA, Gilbert C, Ogryzko V, Kingston RE, Park PJ.

Mol Cell. 2012 Aug 24;47(4):596-607. doi: 10.1016/j.molcel.2012.06.011. Epub 2012 Jul 12.

39.

Protein landscape at Drosophila melanogaster telomere-associated sequence repeats.

Antão JM, Mason JM, Déjardin J, Kingston RE.

Mol Cell Biol. 2012 Jun;32(12):2170-82. doi: 10.1128/MCB.00010-12. Epub 2012 Apr 9.

40.

The genomic binding sites of a noncoding RNA.

Simon MD, Wang CI, Kharchenko PV, West JA, Chapman BA, Alekseyenko AA, Borowsky ML, Kuroda MI, Kingston RE.

Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20497-502. doi: 10.1073/pnas.1113536108. Epub 2011 Dec 5.

41.

Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 Å resolution.

Armache KJ, Garlick JD, Canzio D, Narlikar GJ, Kingston RE.

Science. 2011 Nov 18;334(6058):977-82. doi: 10.1126/science.1210915.

42.

Compaction of chromatin by diverse Polycomb group proteins requires localized regions of high charge.

Grau DJ, Chapman BA, Garlick JD, Borowsky M, Francis NJ, Kingston RE.

Genes Dev. 2011 Oct 15;25(20):2210-21. doi: 10.1101/gad.17288211.

43.

Functional dissection of Polycomb repressive complex 1 reveals the importance of a charged domain.

Grau DJ, Antao JM, Kingston RE.

Cold Spring Harb Symp Quant Biol. 2010;75:61-70. doi: 10.1101/sqb.2010.75.056. Epub 2011 Apr 18.

PMID:
21502414
44.

Genome-wide identification of polycomb-associated RNAs by RIP-seq.

Zhao J, Ohsumi TK, Kung JT, Ogawa Y, Grau DJ, Sarma K, Song JJ, Kingston RE, Borowsky M, Lee JT.

Mol Cell. 2010 Dec 22;40(6):939-53. doi: 10.1016/j.molcel.2010.12.011.

45.

Global relevance of Aire binding to hypomethylated lysine-4 of histone-3.

Koh AS, Kingston RE, Benoist C, Mathis D.

Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):13016-21. doi: 10.1073/pnas.1004436107. Epub 2010 Jul 6.

46.

A region of the human HOXD cluster that confers polycomb-group responsiveness.

Woo CJ, Kharchenko PV, Daheron L, Park PJ, Kingston RE.

Cell. 2010 Jan 8;140(1):99-110. doi: 10.1016/j.cell.2009.12.022.

47.

Interaction of HP1 and Brg1/Brm with the globular domain of histone H3 is required for HP1-mediated repression.

Lavigne M, Eskeland R, Azebi S, Saint-André V, Jang SM, Batsché E, Fan HY, Kingston RE, Imhof A, Muchardt C.

PLoS Genet. 2009 Dec;5(12):e1000769. doi: 10.1371/journal.pgen.1000769. Epub 2009 Dec 11.

48.

Chromatin remodeling by imitation switch (ISWI) class ATP-dependent remodelers is stimulated by histone variant H2A.Z.

Goldman JA, Garlick JD, Kingston RE.

J Biol Chem. 2010 Feb 12;285(7):4645-51. doi: 10.1074/jbc.M109.072348. Epub 2009 Nov 25.

49.

Huntingtin facilitates polycomb repressive complex 2.

Seong IS, Woda JM, Song JJ, Lloret A, Abeyrathne PD, Woo CJ, Gregory G, Lee JM, Wheeler VC, Walz T, Kingston RE, Gusella JF, Conlon RA, MacDonald ME.

Hum Mol Genet. 2010 Feb 15;19(4):573-83. doi: 10.1093/hmg/ddp524. Epub 2009 Nov 23.

50.

Mechanisms of polycomb gene silencing: knowns and unknowns.

Simon JA, Kingston RE.

Nat Rev Mol Cell Biol. 2009 Oct;10(10):697-708. doi: 10.1038/nrm2763. Epub 2009 Sep 9. Review.

PMID:
19738629

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