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A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium.

Barupal DK, Zhang Y, Shen T, Fan S, Roberts BS, Fitzgerald P, Wancewicz B, Valdiviez L, Wohlgemuth G, Byram G, Choy YY, Haffner B, Showalter MR, Vaniya A, Bloszies CS, Folz JS, Kind T, Flenniken AM, McKerlie C, Nutter LMJ, Lloyd KC, Fiehn O.

Metabolites. 2019 May 22;9(5). pii: E101. doi: 10.3390/metabo9050101.


Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data.

Fan S, Kind T, Cajka T, Hazen SL, Tang WHW, Kaddurah-Daouk R, Irvin MR, Arnett DK, Barupal DK, Fiehn O.

Anal Chem. 2019 Mar 5;91(5):3590-3596. doi: 10.1021/acs.analchem.8b05592. Epub 2019 Feb 19.


Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion of 9 Cell-Cell Signaling Molecules from Sympathoadrenal Chromaffin Cells in the Presence of Lithium.

Hook V, Kind T, Podvin S, Palazoglu M, Tran C, Toneff T, Samra S, Lietz C, Fiehn O.

ACS Chem Neurosci. 2019 Mar 20;10(3):1369-1379. doi: 10.1021/acschemneuro.8b00432. Epub 2019 Jan 23.


Structure Annotation of All Mass Spectra in Untargeted Metabolomics.

Blaženović I, Kind T, Sa MR, Ji J, Vaniya A, Wancewicz B, Roberts BS, Torbašinović H, Lee T, Mehta SS, Showalter MR, Song H, Kwok J, Jahn D, Kim J, Fiehn O.

Anal Chem. 2019 Feb 5;91(3):2155-2162. doi: 10.1021/acs.analchem.8b04698. Epub 2019 Jan 16.


Increasing Compound Identification Rates in Untargeted Lipidomics Research with Liquid Chromatography Drift Time-Ion Mobility Mass Spectrometry.

Blaženović I, Shen T, Mehta SS, Kind T, Ji J, Piparo M, Cacciola F, Mondello L, Fiehn O.

Anal Chem. 2018 Sep 18;90(18):10758-10764. doi: 10.1021/acs.analchem.8b01527. Epub 2018 Aug 29.


Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics.

Blaženović I, Kind T, Ji J, Fiehn O.

Metabolites. 2018 May 10;8(2). pii: E31. doi: 10.3390/metabo8020031. Review.


Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry.

Kind T, Fiehn O.

Phytochem Lett. 2017 Sep;21:313-319. doi: 10.1016/j.phytol.2016.11.006. Epub 2016 Nov 17.


Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics.

Lai Z, Tsugawa H, Wohlgemuth G, Mehta S, Mueller M, Zheng Y, Ogiwara A, Meissen J, Showalter M, Takeuchi K, Kind T, Beal P, Arita M, Fiehn O.

Nat Methods. 2018 Jan;15(1):53-56. doi: 10.1038/nmeth.4512. Epub 2017 Nov 27.


Critical Assessment of Small Molecule Identification 2016: automated methods.

Schymanski EL, Ruttkies C, Krauss M, Brouard C, Kind T, Dührkop K, Allen F, Vaniya A, Verdegem D, Böcker S, Rousu J, Shen H, Tsugawa H, Sajed T, Fiehn O, Ghesquière B, Neumann S.

J Cheminform. 2017 Mar 27;9(1):22. doi: 10.1186/s13321-017-0207-1.


Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy.

Blaženović I, Kind T, Torbašinović H, Obrenović S, Mehta SS, Tsugawa H, Wermuth T, Schauer N, Jahn M, Biedendieck R, Jahn D, Fiehn O.

J Cheminform. 2017 May 25;9(1):32. doi: 10.1186/s13321-017-0219-x.


C3PO as a Companion to R2C2 for Feedback.

Kind T, Agrawal D.

J Grad Med Educ. 2017 Oct;9(5):662. doi: 10.4300/JGME-D-17-00239.1. No abstract available.


Characteristics of multi-institutional health sciences education research: a systematic review.

Schiller JH, Beck Dallaghan GL, Kind T, McLauchlan H, Gigante J, Smith S.

J Med Libr Assoc. 2017 Oct;105(4):328-335. doi: 10.5195/jmla.2017.134. Epub 2017 Oct 1. Review.


Using Accurate Mass Gas Chromatography-Mass Spectrometry with the MINE Database for Epimetabolite Annotation.

Lai Z, Kind T, Fiehn O.

Anal Chem. 2017 Oct 3;89(19):10171-10180. doi: 10.1021/acs.analchem.7b01134. Epub 2017 Sep 22.


Identification of small molecules using accurate mass MS/MS search.

Kind T, Tsugawa H, Cajka T, Ma Y, Lai Z, Mehta SS, Wohlgemuth G, Barupal DK, Showalter MR, Arita M, Fiehn O.

Mass Spectrom Rev. 2018 Jul;37(4):513-532. doi: 10.1002/mas.21535. Epub 2017 Apr 24. Review.


Targeted Enrichment for Pathogen Detection and Characterization in Three Felid Species.

Lee JS, Mackie RS, Harrison T, Shariat B, Kind T, Kehl T, Löchelt M, Boucher C, VandeWoude S.

J Clin Microbiol. 2017 Jun;55(6):1658-1670. doi: 10.1128/JCM.01463-16. Epub 2017 Mar 22.


The Development and Impact of a Social Media and Professionalism Course for Medical Students.

Gomes AW, Butera G, Chretien KC, Kind T.

Teach Learn Med. 2017 Jul-Sep;29(3):296-303. doi: 10.1080/10401334.2016.1275971. Epub 2017 Mar 8.


Promoting Resident Autonomy During Family-Centered Rounds: A Qualitative Study of Resident, Hospitalist, and Subspecialty Physicians.

Beck J, Kind T, Meyer R, Bhansali P.

J Grad Med Educ. 2016 Dec;8(5):731-738. doi: 10.4300/JGME-D-16-00231.1.


Interstitial Cystitis-Associated Urinary Metabolites Identified by Mass-Spectrometry Based Metabolomics Analysis.

Kind T, Cho E, Park TD, Deng N, Liu Z, Lee T, Fiehn O, Kim J.

Sci Rep. 2016 Dec 15;6:39227. doi: 10.1038/srep39227.


Reduction in hospital-associated methicillin-resistant Staphylococcus aureus and vancomycin-resistant Enterococcus with daily chlorhexidine gluconate bathing for medical inpatients.

Lowe CF, Lloyd-Smith E, Sidhu B, Ritchie G, Sharma A, Jang W, Wong A, Bilawka J, Richards D, Kind T, Puddicombe D, Champagne S, Leung V, Romney MG.

Am J Infect Control. 2017 Mar 1;45(3):255-259. doi: 10.1016/j.ajic.2016.09.019. Epub 2016 Dec 8.


Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats.

Barupal DK, Pinkerton KE, Hood C, Kind T, Fiehn O.

Chem Res Toxicol. 2016 Nov 21;29(11):1818-1827. Epub 2016 Nov 9.


Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software.

Tsugawa H, Kind T, Nakabayashi R, Yukihira D, Tanaka W, Cajka T, Saito K, Fiehn O, Arita M.

Anal Chem. 2016 Aug 16;88(16):7946-58. doi: 10.1021/acs.analchem.6b00770. Epub 2016 Aug 4.


A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site.

Becker EA, Yao AI, Seitzer PM, Kind T, Wang T, Eigenheer R, Shao KS, Yarov-Yarovoy V, Facciotti MT.

PLoS One. 2016 Jun 21;11(6):e0156543. doi: 10.1371/journal.pone.0156543. eCollection 2016.


Changes in plasma metabolites and glucose homeostasis during omega-3 polyunsaturated fatty acid supplementation in women with polycystic ovary syndrome.

Karakas SE, Perroud B, Kind T, Palazoglu M, Fiehn O.

BBA Clin. 2016 Apr 13;5:179-85. doi: 10.1016/j.bbacli.2016.04.003. eCollection 2016 Jun.


Ultrafast Polyphenol Metabolomics of Red Wines Using MicroLC-MS/MS.

Ma Y, Tanaka N, Vaniya A, Kind T, Fiehn O.

J Agric Food Chem. 2016 Jan 20;64(2):505-12. doi: 10.1021/acs.jafc.5b04890. Epub 2016 Jan 5.


An in silico MS/MS library for automatic annotation of novel FAHFA lipids.

Ma Y, Kind T, Vaniya A, Gennity I, Fahrmann JF, Fiehn O.

J Cheminform. 2015 Nov 16;7:53. doi: 10.1186/s13321-015-0104-4. eCollection 2015.


Lipidomic Analysis of Chlamydomonas reinhardtii under Nitrogen and Sulfur Deprivation.

Yang D, Song D, Kind T, Ma Y, Hoefkens J, Fiehn O.

PLoS One. 2015 Sep 16;10(9):e0137948. doi: 10.1371/journal.pone.0137948. eCollection 2015.


MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics.

Jeffryes JG, Colastani RL, Elbadawi-Sidhu M, Kind T, Niehaus TD, Broadbelt LJ, Hanson AD, Fiehn O, Tyo KE, Henry CS.

J Cheminform. 2015 Aug 28;7:44. doi: 10.1186/s13321-015-0087-1. eCollection 2015.


Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods.

Abate-Pella D, Freund DM, Ma Y, Simón-Manso Y, Hollender J, Broeckling CD, Huhman DV, Krokhin OV, Stoll DR, Hegeman AD, Kind T, Fiehn O, Schymanski EL, Prenni JE, Sumner LW, Boswell PG.

J Chromatogr A. 2015 Sep 18;1412:43-51. doi: 10.1016/j.chroma.2015.07.108. Epub 2015 Aug 3.


The Importance of Situational Awareness: A Qualitative Study of Family Members' and Nurses' Perspectives on Teaching During Family-Centered Rounds.

Beck J, Meyer R, Kind T, Bhansali P.

Acad Med. 2015 Oct;90(10):1401-7. doi: 10.1097/ACM.0000000000000810.


Professional guidelines for social media use: a starting point.

Kind T.

AMA J Ethics. 2015 May 1;17(5):441-7. doi: 10.1001/journalofethics.2015.17.5.nlit1-1505. No abstract available.


A Digital Ethnography of Medical Students who Use Twitter for Professional Development.

Chretien KC, Tuck MG, Simon M, Singh LO, Kind T.

J Gen Intern Med. 2015 Nov;30(11):1673-80. doi: 10.1007/s11606-015-3345-z.


MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis.

Tsugawa H, Cajka T, Kind T, Ma Y, Higgins B, Ikeda K, Kanazawa M, VanderGheynst J, Fiehn O, Arita M.

Nat Methods. 2015 Jun;12(6):523-6. doi: 10.1038/nmeth.3393. Epub 2015 May 4.


Social media for lifelong learning.

Kind T, Evans Y.

Int Rev Psychiatry. 2015 Apr;27(2):124-32. doi: 10.3109/09540261.2014.990421. Review.


Professional Identity Development Through Service Learning: A Qualitative Study of First-Year Medical Students Volunteering at a Medical Specialty Camp.

Beck J, Chretien K, Kind T.

Clin Pediatr (Phila). 2015 Nov;54(13):1276-82. doi: 10.1177/0009922815571108. Epub 2015 Feb 8.


Health literacy and medication adherence in adolescents.

Dharmapuri S, Best D, Kind T, Silber TJ, Simpson P, D'Angelo L.

J Pediatr. 2015 Feb;166(2):378-82. doi: 10.1016/j.jpeds.2014.10.002. Epub 2014 Nov 14.


LipidBlast templates as flexible tools for creating new in-silico tandem mass spectral libraries.

Kind T, Okazaki Y, Saito K, Fiehn O.

Anal Chem. 2014 Nov 18;86(22):11024-7. doi: 10.1021/ac502511a. Epub 2014 Nov 6.


MS2Analyzer: A software for small molecule substructure annotations from accurate tandem mass spectra.

Ma Y, Kind T, Yang D, Leon C, Fiehn O.

Anal Chem. 2014 Nov 4;86(21):10724-31. doi: 10.1021/ac502818e. Epub 2014 Oct 14.


Educating pediatric residents about breastfeeding: evaluation of 3 time-efficient teaching strategies.

Tender JA, Cuzzi S, Kind T, Simmens SJ, Blatt B, Greenberg L.

J Hum Lact. 2014 Nov;30(4):458-65. doi: 10.1177/0890334414548459. Epub 2014 Sep 4.


Comparative evaluation of extraction methods for simultaneous mass-spectrometric analysis of complex lipids and primary metabolites from human blood plasma.

Lee DY, Kind T, Yoon YR, Fiehn O, Liu KH.

Anal Bioanal Chem. 2014 Nov;406(28):7275-86. doi: 10.1007/s00216-014-8124-x. Epub 2014 Aug 30.


Climbing social media in medicine's hierarchy of needs.

Chretien KC, Kind T.

Acad Med. 2014 Oct;89(10):1318-20. doi: 10.1097/ACM.0000000000000430.


Exploration of polar lipid accumulation profiles in Euglena gracilis using LipidBlast, an MS/MS spectral library constructed in silico.

Ogawa T, Furuhashi T, Okazawa A, Nakai R, Nakazawa M, Kind T, Fiehn O, Kanaya S, Arita M, Ohta D.

Biosci Biotechnol Biochem. 2014;78(1):14-8. doi: 10.1080/09168451.2014.877826. Epub 2014 Apr 10.


Effect of pulmonary endarterectomy for chronic thromboembolic pulmonary hypertension on stroke volume response to exercise.

Surie S, van der Plas MN, Marcus JT, Kind T, Kloek JJ, Vonk-Noordegraaf A, Bresser P.

Am J Cardiol. 2014 Jul 1;114(1):136-40. doi: 10.1016/j.amjcard.2014.04.016. Epub 2014 Apr 18.


Social media milestones: entrusting trainees to conduct themselves responsibly and professionally.

Kind T.

J Grad Med Educ. 2014 Mar;6(1):170-1. doi: 10.4300/JGME-D-13-00439.1. No abstract available.


Learning to deliver care in a medical home: a qualitative analysis of residents' reflections on practice.

Kind T, Goldman E, Fratantoni K, Wiedermann BL, Agrawal D, Coddington D.

Clin Pediatr (Phila). 2014 Jun;53(7):658-65. doi: 10.1177/0009922814526975. Epub 2014 Mar 14.


Running on the road to reflection.

Kind T.

Acad Med. 2014 Feb;89(2):235. doi: 10.1097/ACM.0000000000000091. No abstract available.


Further dissemination of medical education projects after presentation at a pediatric national meeting (1998-2008).

Smith S, Kind T, Beck G, Schiller J, McLauchlan H, Harris M, Gigante J.

Teach Learn Med. 2014;26(1):3-8. doi: 10.1080/10401334.2013.857332.


Pediatrics Residents' Perspectives on Family-Centered Rounds: A Qualitative Study at 2 Children's Hospitals.

Mittal V, Krieger E, Lee BC, Kind T, McCavit T, Campbell J, Ottolini MC, Flores G.

J Grad Med Educ. 2013 Mar;5(1):81-7. doi: 10.4300/JGME-D-11-00314.1.


The importance of trabecular hypertrophy in right ventricular adaptation to chronic pressure overload.

van de Veerdonk MC, Dusoswa SA, Marcus JT, Bogaard HJ, Spruijt O, Kind T, Westerhof N, Vonk-Noordegraaf A.

Int J Cardiovasc Imaging. 2014 Feb;30(2):357-65. doi: 10.1007/s10554-013-0338-z. Epub 2013 Dec 4.


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