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Items: 22

1.

Identification of virus-encoded microRNAs in divergent Papillomaviruses.

Chirayil R, Kincaid RP, Dahlke C, Kuny CV, Dälken N, Spohn M, Lawson B, Grundhoff A, Sullivan CS.

PLoS Pathog. 2018 Jul 26;14(7):e1007156. doi: 10.1371/journal.ppat.1007156. eCollection 2018 Jul.

2.

RNA triphosphatase DUSP11 enables exonuclease XRN-mediated restriction of hepatitis C virus.

Kincaid RP, Lam VL, Chirayil RP, Randall G, Sullivan CS.

Proc Natl Acad Sci U S A. 2018 Aug 7;115(32):8197-8202. doi: 10.1073/pnas.1802326115. Epub 2018 Jul 23.

3.

The Murine Polyomavirus MicroRNA Locus Is Required To Promote Viruria during the Acute Phase of Infection.

Burke JM, Bass CR, Kincaid RP, Ulug ET, Sullivan CS.

J Virol. 2018 Jul 31;92(16). pii: e02131-17. doi: 10.1128/JVI.02131-17. Print 2018 Aug 15.

4.

MMTV does not encode viral microRNAs but alters the levels of cancer-associated host microRNAs.

Kincaid RP, Panicker NG, Lozano MM, Sullivan CS, Dudley JP, Mustafa F.

Virology. 2018 Jan 1;513:180-187. doi: 10.1016/j.virol.2017.09.030. Epub 2017 Nov 5.

5.

Expression of short hairpin RNAs using the compact architecture of retroviral microRNA genes.

Burke JM, Kincaid RP, Aloisio F, Welch N, Sullivan CS.

Nucleic Acids Res. 2017 Sep 29;45(17):e154. doi: 10.1093/nar/gkx653.

6.
7.

Lessons Learned from In Vivo Studies of a Viral Noncoding RNA.

Kincaid RP, Sullivan CS.

mSphere. 2016 Mar 2;1(2). pii: e00026-16. doi: 10.1128/mSphere.00026-16. eCollection 2016 Mar-Apr.

8.

Correction for Chen et al., Divergent MicroRNA Targetomes of Closely Related Circulating Strains of a Polyomavirus.

Chen CJ, Cox JE, Kincaid RP, Martinez A, Sullivan CS.

J Virol. 2016 Jan 28;90(4):2157-8. doi: 10.1128/JVI.02954-15. Print 2016 Feb 15. No abstract available.

9.

Identification, validation, and characterization of noncanonical miRNAs.

Burke JM, Kuny CV, Kincaid RP, Sullivan CS.

Methods. 2015 Dec;91:57-68. doi: 10.1016/j.ymeth.2015.07.013. Epub 2015 Jul 22.

PMID:
26210399
10.

Identification of tri-phosphatase activity in the biogenesis of retroviral microRNAs and RNAP III-generated shRNAs.

Burke JM, Bass CR, Kincaid RP, Sullivan CS.

Nucleic Acids Res. 2014 Dec 16;42(22):13949-62. doi: 10.1093/nar/gku1247. Epub 2014 Nov 26.

11.

Naturally arising strains of polyomaviruses with severely attenuated microRNA expression.

Chen CJ, Burke JM, Kincaid RP, Azarm KD, Mireles N, Butel JS, Sullivan CS.

J Virol. 2014 Nov;88(21):12683-93. doi: 10.1128/JVI.01933-14. Epub 2014 Aug 20.

12.

A central role for the primary microRNA stem in guiding the position and efficiency of Drosha processing of a viral pri-miRNA.

Burke JM, Kelenis DP, Kincaid RP, Sullivan CS.

RNA. 2014 Jul;20(7):1068-77. doi: 10.1261/rna.044537.114. Epub 2014 May 22.

13.

Noncanonical microRNA (miRNA) biogenesis gives rise to retroviral mimics of lymphoproliferative and immunosuppressive host miRNAs.

Kincaid RP, Chen Y, Cox JE, Rethwilm A, Sullivan CS.

MBio. 2014 Apr 8;5(2):e00074. doi: 10.1128/mBio.00074-14.

14.

A human torque teno virus encodes a microRNA that inhibits interferon signaling.

Kincaid RP, Burke JM, Cox JC, de Villiers EM, Sullivan CS.

PLoS Pathog. 2013;9(12):e1003818. doi: 10.1371/journal.ppat.1003818. Epub 2013 Dec 19.

15.

Reciprocal inhibition between intracellular antiviral signaling and the RNAi machinery in mammalian cells.

Seo GJ, Kincaid RP, Phanaksri T, Burke JM, Pare JM, Cox JE, Hsiang TY, Krug RM, Sullivan CS.

Cell Host Microbe. 2013 Oct 16;14(4):435-45. doi: 10.1016/j.chom.2013.09.002. Epub 2013 Sep 26.

16.

Comprehensive mapping and analysis of Kaposi's sarcoma-associated herpesvirus 3' UTRs identify differential posttranscriptional control of gene expression in lytic versus latent infection.

McClure LV, Kincaid RP, Burke JM, Grundhoff A, Sullivan CS.

J Virol. 2013 Dec;87(23):12838-49. doi: 10.1128/JVI.02374-13. Epub 2013 Sep 25.

17.

Divergent MicroRNA targetomes of closely related circulating strains of a polyomavirus.

Chen CJ, Cox JE, Kincaid RP, Martinez A, Sullivan CS.

J Virol. 2013 Oct;87(20):11135-47. doi: 10.1128/JVI.01711-13. Epub 2013 Aug 7. Erratum in: J Virol. 2016 Feb 15;90(4):2157-8.

18.

Virus-encoded microRNAs: an overview and a look to the future.

Kincaid RP, Sullivan CS.

PLoS Pathog. 2012 Dec;8(12):e1003018. doi: 10.1371/journal.ppat.1003018. Epub 2012 Dec 20. Review.

19.

RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network.

Wang PI, Hwang S, Kincaid RP, Sullivan CS, Lee I, Marcotte EM.

Genome Biol. 2012 Dec 26;13(12):R125. doi: 10.1186/gb-2012-13-12-r125.

20.

RNA virus microRNA that mimics a B-cell oncomiR.

Kincaid RP, Burke JM, Sullivan CS.

Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3077-82. doi: 10.1073/pnas.1116107109. Epub 2012 Jan 30.

21.

Insights into Polyomaviridae microRNA function derived from study of the bandicoot papillomatosis carcinomatosis viruses.

Chen CJ, Kincaid RP, Seo GJ, Bennett MD, Sullivan CS.

J Virol. 2011 May;85(9):4487-500. doi: 10.1128/JVI.02557-10. Epub 2011 Feb 23.

22.

Small RNA profiling reveals antisense transcription throughout the KSHV genome and novel small RNAs.

Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS.

RNA. 2010 Aug;16(8):1540-58. doi: 10.1261/rna.1967910. Epub 2010 Jun 21.

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