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Items: 26

1.

Structures suggest a mechanism for energy coupling by a family of organic anion transporters.

Leano JB, Batarni S, Eriksen J, Juge N, Pak JE, Kimura-Someya T, Robles-Colmenares Y, Moriyama Y, Stroud RM, Edwards RH.

PLoS Biol. 2019 May 13;17(5):e3000260. doi: 10.1371/journal.pbio.3000260. eCollection 2019 May.

2.

Metastable asymmetrical structure of a shaftless V1 motor.

Maruyama S, Suzuki K, Imamura M, Sasaki H, Matsunami H, Mizutani K, Saito Y, Imai FL, Ishizuka-Katsura Y, Kimura-Someya T, Shirouzu M, Uchihashi T, Ando T, Yamato I, Murata T.

Sci Adv. 2019 Jan 30;5(1):eaau8149. doi: 10.1126/sciadv.aau8149. eCollection 2019 Jan.

3.

Interhelical interactions between D92 and C218 in the cytoplasmic domain regulate proton uptake upon N-decay in the proton transport of Acetabularia rhodopsin II.

Tamogami J, Kikukawa T, Ohkawa K, Ohsawa N, Nara T, Demura M, Miyauchi S, Kimura-Someya T, Shirouzu M, Yokoyama S, Shimono K, Kamo N.

J Photochem Photobiol B. 2018 Jun;183:35-45. doi: 10.1016/j.jphotobiol.2018.04.012. Epub 2018 Apr 11.

PMID:
29684719
4.

Crystallization and X-ray analysis of 23 nm virus-like particles from Norovirus Chiba strain.

Hasegawa K, Someya Y, Shigematsu H, Kimura-Someya T, Nuemket N, Kumasaka T.

Acta Crystallogr F Struct Biol Commun. 2017 Oct 1;73(Pt 10):568-573. doi: 10.1107/S2053230X17013759. Epub 2017 Oct 2.

5.

Crystal structural characterization reveals novel oligomeric interactions of human voltage-dependent anion channel 1.

Hosaka T, Okazaki M, Kimura-Someya T, Ishizuka-Katsura Y, Ito K, Yokoyama S, Dodo K, Sodeoka M, Shirouzu M.

Protein Sci. 2017 Sep;26(9):1749-1758. doi: 10.1002/pro.3211. Epub 2017 Jun 21.

6.

Existence of two O-like intermediates in the photocycle of Acetabularia rhodopsin II, a light-driven proton pump from a marine alga.

Tamogami J, Kikukawa T, Nara T, Demura M, Kimura-Someya T, Shirouzu M, Yokoyama S, Miyauchi S, Shimono K, Kamo N.

Biophys Physicobiol. 2017 Mar 1;14:49-55. doi: 10.2142/biophysico.14.0_49. eCollection 2017.

7.

Structural basis for disruption of claudin assembly in tight junctions by an enterotoxin.

Shinoda T, Shinya N, Ito K, Ohsawa N, Terada T, Hirata K, Kawano Y, Yamamoto M, Kimura-Someya T, Yokoyama S, Shirouzu M.

Sci Rep. 2016 Sep 20;6:33632. doi: 10.1038/srep33632.

8.

Cell-free methods to produce structurally intact mammalian membrane proteins.

Shinoda T, Shinya N, Ito K, Ishizuka-Katsura Y, Ohsawa N, Terada T, Hirata K, Kawano Y, Yamamoto M, Tomita T, Ishibashi Y, Hirabayashi Y, Kimura-Someya T, Shirouzu M, Yokoyama S.

Sci Rep. 2016 Jul 28;6:30442. doi: 10.1038/srep30442.

9.

Structural Mechanism for Light-driven Transport by a New Type of Chloride Ion Pump, Nonlabens marinus Rhodopsin-3.

Hosaka T, Yoshizawa S, Nakajima Y, Ohsawa N, Hato M, DeLong EF, Kogure K, Yokoyama S, Kimura-Someya T, Iwasaki W, Shirouzu M.

J Biol Chem. 2016 Aug 19;291(34):17488-17495. doi: 10.1074/jbc.M116.728220. Epub 2016 Jun 30.

10.

Structural basis for the slow photocycle and late proton release in Acetabularia rhodopsin I from the marine plant Acetabularia acetabulum.

Furuse M, Tamogami J, Hosaka T, Kikukawa T, Shinya N, Hato M, Ohsawa N, Kim SY, Jung KH, Demura M, Miyauchi S, Kamo N, Shimono K, Kimura-Someya T, Yokoyama S, Shirouzu M.

Acta Crystallogr D Biol Crystallogr. 2015 Nov;71(Pt 11):2203-16. doi: 10.1107/S1399004715015722. Epub 2015 Oct 27.

PMID:
26527138
11.

Crystal structures of the human adiponectin receptors.

Tanabe H, Fujii Y, Okada-Iwabu M, Iwabu M, Nakamura Y, Hosaka T, Motoyama K, Ikeda M, Wakiyama M, Terada T, Ohsawa N, Hato M, Ogasawara S, Hino T, Murata T, Iwata S, Hirata K, Kawano Y, Yamamoto M, Kimura-Someya T, Shirouzu M, Yamauchi T, Kadowaki T, Yokoyama S.

Nature. 2015 Apr 16;520(7547):312-316. doi: 10.1038/nature14301. Epub 2015 Apr 8.

12.

Expression, purification, crystallization, and preliminary X-ray crystallographic studies of the human adiponectin receptors, AdipoR1 and AdipoR2.

Tanabe H, Motoyama K, Ikeda M, Wakiyama M, Terada T, Ohsawa N, Hosaka T, Hato M, Fujii Y, Nakamura Y, Ogasawara S, Hino T, Murata T, Iwata S, Okada-Iwabu M, Iwabu M, Hirata K, Kawano Y, Yamamoto M, Kimura-Someya T, Shirouzu M, Yamauchi T, Kadowaki T, Yokoyama S.

J Struct Funct Genomics. 2015 Mar;16(1):11-23. doi: 10.1007/s10969-014-9192-z. Epub 2015 Jan 10.

13.

Allosteric regulation of γ-secretase activity by a phenylimidazole-type γ-secretase modulator.

Takeo K, Tanimura S, Shinoda T, Osawa S, Zahariev IK, Takegami N, Ishizuka-Katsura Y, Shinya N, Takagi-Niidome S, Tominaga A, Ohsawa N, Kimura-Someya T, Shirouzu M, Yokoshima S, Yokoyama S, Fukuyama T, Tomita T, Iwatsubo T.

Proc Natl Acad Sci U S A. 2014 Jul 22;111(29):10544-9. doi: 10.1073/pnas.1402171111. Epub 2014 Jul 9.

14.

Molecular pathogenesis of spondylocheirodysplastic Ehlers-Danlos syndrome caused by mutant ZIP13 proteins.

Bin BH, Hojyo S, Hosaka T, Bhin J, Kano H, Miyai T, Ikeda M, Kimura-Someya T, Shirouzu M, Cho EG, Fukue K, Kambe T, Ohashi W, Kim KH, Seo J, Choi DH, Nam YJ, Hwang D, Fukunaka A, Fujitani Y, Yokoyama S, Superti-Furga A, Ikegawa S, Lee TR, Fukada T.

EMBO Mol Med. 2014 Aug;6(8):1028-42. doi: 10.15252/emmm.201303809.

15.

A small-molecule AdipoR agonist for type 2 diabetes and short life in obesity.

Okada-Iwabu M, Yamauchi T, Iwabu M, Honma T, Hamagami K, Matsuda K, Yamaguchi M, Tanabe H, Kimura-Someya T, Shirouzu M, Ogata H, Tokuyama K, Ueki K, Nagano T, Tanaka A, Yokoyama S, Kadowaki T.

Nature. 2013 Nov 28;503(7477):493-9. doi: 10.1038/nature12656. Epub 2013 Oct 30.

PMID:
24172895
16.

Photochemistry of Acetabularia rhodopsin II from a marine plant, Acetabularia acetabulum.

Kikukawa T, Shimono K, Tamogami J, Miyauchi S, Kim SY, Kimura-Someya T, Shirouzu M, Jung KH, Yokoyama S, Kamo N.

Biochemistry. 2011 Oct 18;50(41):8888-98. doi: 10.1021/bi2009932. Epub 2011 Sep 19.

PMID:
21905737
17.

Crystal structure of the eukaryotic light-driven proton-pumping rhodopsin, Acetabularia rhodopsin II, from marine alga.

Wada T, Shimono K, Kikukawa T, Hato M, Shinya N, Kim SY, Kimura-Someya T, Shirouzu M, Tamogami J, Miyauchi S, Jung KH, Kamo N, Yokoyama S.

J Mol Biol. 2011 Sep 2;411(5):986-98. doi: 10.1016/j.jmb.2011.06.028. Epub 2011 Jun 25.

PMID:
21726566
18.

Oligomerization of hepatitis C virus core protein is crucial for interaction with the cytoplasmic domain of E1 envelope protein.

Nakai K, Okamoto T, Kimura-Someya T, Ishii K, Lim CK, Tani H, Matsuo E, Abe T, Mori Y, Suzuki T, Miyamura T, Nunberg JH, Moriishi K, Matsuura Y.

J Virol. 2006 Nov;80(22):11265-73. Epub 2006 Sep 13.

19.

Characterization of pseudotype VSV possessing HCV envelope proteins.

Matsuura Y, Tani H, Suzuki K, Kimura-Someya T, Suzuki R, Aizaki H, Ishii K, Moriishi K, Robison CS, Whitt MA, Miyamura T.

Virology. 2001 Aug 1;286(2):263-75.

20.

Complete cysteine-scanning mutagenesis and site-directed chemical modification of the Tn10-encoded metal-tetracycline/H+ antiporter.

Tamura N, Konishi S, Iwaki S, Kimura-Someya T, Nada S, Yamaguchi A.

J Biol Chem. 2001 Jun 8;276(23):20330-9. Epub 2001 Feb 6.

22.

Cysteine-scanning mutagenesis around transmembrane segments 1 and 11 and their flanking loop regions of Tn10-encoded metal-Tetracycline/H+ antiporter.

Kimura-Someya T, Iwaki S, Konishi S, Tamura N, Kubo Y, Yamaguchi A.

J Biol Chem. 2000 Jun 23;275(25):18692-7.

23.
24.

Cysteine-scanning mutagenesis around transmembrane segment VI of Tn10-encoded metal-tetracycline/H(+) antiporter.

Konishi S, Iwaki S, Kimura-Someya T, Yamaguchi A.

FEBS Lett. 1999 Nov 19;461(3):315-8.

25.

Membrane topology of the staphylococcal tetracycline efflux protein Tet(K) determined by antibacterial resistance gene fusion.

Hirata T, Fujihira E, Kimura-Someya T, Yamaguchi A.

J Biochem. 1998 Dec 1;124(6):1206-11.

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