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Items: 1 to 50 of 84

1.

Isolation and characterization of a moderate thermophilic Paenibacillus naphthalenovorans strain 4B1 capable of degrading dibenzofuran from dioxin-contaminated soil in Vietnam.

Thanh LTH, Thi TVN, Shintani M, Moriuchi R, Dohra H, Loc NH, Kimbara K.

J Biosci Bioeng. 2019 Jun 13. pii: S1389-1723(19)30267-1. doi: 10.1016/j.jbiosc.2019.05.006. [Epub ahead of print]

PMID:
31202727
2.

High-Resolution Comparison of Bacterial Conjugation Frequencies.

Shintani M, Ohkuma M, Kimbara K.

J Vis Exp. 2019 Jan 10;(143). doi: 10.3791/57812.

PMID:
30688297
3.

Simultaneous enzymatic saccharification and comminution for the valorization of lignocellulosic biomass toward natural products.

Navarro RR, Otsuka Y, Nojiri M, Ishizuka S, Nakamura M, Shikinaka K, Matsuo K, Sasaki K, Sasaki K, Kimbara K, Nakashimada Y, Kato J.

BMC Biotechnol. 2018 Dec 12;18(1):79. doi: 10.1186/s12896-018-0487-1.

4.

Novel Self-Transmissible and Broad-Host-Range Plasmids Exogenously Captured From Anaerobic Granules or Cow Manure.

Yanagiya K, Maejima Y, Nakata H, Tokuda M, Moriuchi R, Dohra H, Inoue K, Ohkuma M, Kimbara K, Shintani M.

Front Microbiol. 2018 Nov 6;9:2602. doi: 10.3389/fmicb.2018.02602. eCollection 2018.

5.

Biodegradation of A-fuel oil in soil samples with bacterial mixtures of Rhodococcus and Gordonia strains under low temperature conditions.

Shintani M, Sugiyama K, Sakurai T, Yamada K, Kimbara K.

J Biosci Bioeng. 2019 Feb;127(2):197-200. doi: 10.1016/j.jbiosc.2018.07.018. Epub 2018 Aug 4.

PMID:
30082218
6.

Proteobacteria and Bacteroidetes are major phyla of filterable bacteria passing through 0.22 μm pore size membrane filter, in Lake Sanaru, Hamamatsu, Japan.

Maejima Y, Kushimoto K, Muraguchi Y, Fukuda K, Miura T, Yamazoe A, Kimbara K, Shintani M.

Biosci Biotechnol Biochem. 2018 Jul;82(7):1260-1263. doi: 10.1080/09168451.2018.1456317. Epub 2018 Mar 29.

PMID:
29598452
7.

Correction: Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions.

Nakazawa S, Haramiishi A, Fukuda K, Kanayama Y, Watanabe T, Yuki M, Ohkuma M, Takeda K, Kimbara K, Shintani M.

PLoS One. 2018 Jan 11;13(1):e0191393. doi: 10.1371/journal.pone.0191393. eCollection 2018.

8.

Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions.

Nakazawa S, Haramiishi A, Fukuda K, Kanayama Y, Watanabe T, Yuki M, Ohkuma M, Takeda K, Kimbara K, Shintani M.

PLoS One. 2017 Oct 12;12(10):e0186248. doi: 10.1371/journal.pone.0186248. eCollection 2017. Erratum in: PLoS One. 2018 Jan 11;13(1):e0191393.

9.

Interaction of Bacterial Membrane Vesicles with Specific Species and Their Potential for Delivery to Target Cells.

Tashiro Y, Hasegawa Y, Shintani M, Takaki K, Ohkuma M, Kimbara K, Futamata H.

Front Microbiol. 2017 Apr 7;8:571. doi: 10.3389/fmicb.2017.00571. eCollection 2017.

10.

Cultivable Methylobacterium species diversity in rice seeds identified with whole-cell matrix-assisted laser desorption/ionization time-of-flight mass spectrometric analysis.

Okumura M, Fujitani Y, Maekawa M, Charoenpanich J, Murage H, Kimbara K, Sahin N, Tani A.

J Biosci Bioeng. 2017 Feb;123(2):190-196. doi: 10.1016/j.jbiosc.2016.09.001. Epub 2016 Oct 6.

PMID:
27720675
11.

Complete Genome Sequence of Algoriphagus sp. Strain M8-2, Isolated from a Brackish Lake.

Muraguchi Y, Kushimoto K, Ohtsubo Y, Suzuki T, Dohra H, Kimbara K, Shintani M.

Genome Announc. 2016 May 12;4(3). pii: e00347-16. doi: 10.1128/genomeA.00347-16.

12.

Effects of phosphate addition on methane fermentation in the batch and upflow anaerobic sludge blanket (UASB) reactors.

Suzuki S, Shintani M, Sanchez ZK, Kimura K, Numata M, Yamazoe A, Kimbara K.

Appl Microbiol Biotechnol. 2015 Dec;99(24):10457-66. doi: 10.1007/s00253-015-6942-1. Epub 2015 Sep 9.

PMID:
26350145
13.
14.

Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy.

Shintani M, Sanchez ZK, Kimbara K.

Front Microbiol. 2015 Mar 31;6:242. doi: 10.3389/fmicb.2015.00242. eCollection 2015. Review.

15.

Complete Genome Sequence of Methylobacterium aquaticum Strain 22A, Isolated from Racomitrium japonicum Moss.

Tani A, Ogura Y, Hayashi T, Kimbara K.

Genome Announc. 2015 Apr 9;3(2). pii: e00266-15. doi: 10.1128/genomeA.00266-15.

16.

Bacterial-biota dynamics of eight bryophyte species from different ecosystems.

Koua FH, Kimbara K, Tani A.

Saudi J Biol Sci. 2015 Mar;22(2):204-10. doi: 10.1016/j.sjbs.2014.07.009. Epub 2014 Aug 2.

17.

Complete Genome Sequence of Polychlorinated Biphenyl Degrader Comamonas testosteroni TK102 (NBRC 109938).

Fukuda K, Hosoyama A, Tsuchikane K, Ohji S, Yamazoe A, Fujita N, Shintani M, Kimbara K.

Genome Announc. 2014 Sep 11;2(5). pii: e00865-14. doi: 10.1128/genomeA.00865-14.

18.

Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader Geobacillus sp. Strain JF8 (NBRC 109937).

Shintani M, Ohtsubo Y, Fukuda K, Hosoyama A, Ohji S, Yamazoe A, Fujita N, Nagata Y, Tsuda M, Hatta T, Kimbara K.

Genome Announc. 2014 Jan 23;2(1). pii: e01213-13. doi: 10.1128/genomeA.01213-13.

19.

Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community.

Shintani M, Matsui K, Inoue J, Hosoyama A, Ohji S, Yamazoe A, Nojiri H, Kimbara K, Ohkuma M.

Appl Environ Microbiol. 2014 Jan;80(1):138-45. doi: 10.1128/AEM.02571-13. Epub 2013 Oct 18.

20.

Extensive reduction of cell viability and enhanced matrix production in Pseudomonas aeruginosa PAO1 flow biofilms treated with a D-amino acid mixture.

Sanchez Z, Tani A, Kimbara K.

Appl Environ Microbiol. 2013 Feb;79(4):1396-9. doi: 10.1128/AEM.02911-12. Epub 2012 Dec 7.

21.

Assessment of change in biofilm architecture by nutrient concentration using a multichannel microdevice flow system.

Sanchez Z, Tani A, Suzuki N, Kariyama R, Kumon H, Kimbara K.

J Biosci Bioeng. 2013 Mar;115(3):326-31. doi: 10.1016/j.jbiosc.2012.09.018. Epub 2012 Oct 22.

PMID:
23085416
22.

High-throughput identification and screening of novel Methylobacterium species using whole-cell MALDI-TOF/MS analysis.

Tani A, Sahin N, Matsuyama Y, Enomoto T, Nishimura N, Yokota A, Kimbara K.

PLoS One. 2012;7(7):e40784. doi: 10.1371/journal.pone.0040784. Epub 2012 Jul 12.

23.

Practical application of methanol-mediated mutualistic symbiosis between Methylobacterium species and a roof greening moss, Racomitrium japonicum.

Tani A, Takai Y, Suzukawa I, Akita M, Murase H, Kimbara K.

PLoS One. 2012;7(3):e33800. doi: 10.1371/journal.pone.0033800. Epub 2012 Mar 29.

24.

Methylobacterium gnaphalii sp. nov., isolated from leaves of Gnaphalium spicatum.

Tani A, Sahin N, Kimbara K.

Int J Syst Evol Microbiol. 2012 Nov;62(Pt 11):2602-7. doi: 10.1099/ijs.0.037713-0. Epub 2011 Dec 23.

PMID:
22199216
25.

Methylobacterium oxalidis sp. nov., isolated from leaves of Oxalis corniculata.

Tani A, Sahin N, Kimbara K.

Int J Syst Evol Microbiol. 2012 Jul;62(Pt 7):1647-52. doi: 10.1099/ijs.0.033019-0. Epub 2011 Sep 9.

PMID:
21908681
26.

Culturable bacteria in hydroponic cultures of moss Racomitrium japonicum and their potential as biofertilizers for moss production.

Tani A, Akita M, Murase H, Kimbara K.

J Biosci Bioeng. 2011 Jul;112(1):32-9. doi: 10.1016/j.jbiosc.2011.03.012. Epub 2011 Apr 16.

PMID:
21498111
27.

Characterization of a cryptic plasmid, pSM103mini, from polyethylene-glycol degrading Sphingopyxis macrogoltabida strain 103.

Tani A, Tanaka A, Minami T, Kimbara K, Kawai F.

Biosci Biotechnol Biochem. 2011;75(2):295-8. Epub 2011 Feb 7.

28.

Pandoraea oxalativorans sp. nov., Pandoraea faecigallinarum sp. nov. and Pandoraea vervacti sp. nov., isolated from oxalate-enriched culture.

Sahin N, Tani A, Kotan R, Sedlácek I, Kimbara K, Tamer AU.

Int J Syst Evol Microbiol. 2011 Sep;61(Pt 9):2247-53. doi: 10.1099/ijs.0.026138-0. Epub 2010 Oct 15.

PMID:
20952546
29.

Rapid and multiple in situ identification and analyses of physiological status of specific bacteria based on fluorescent in situ hybridization.

Zhang X, Tani A, Kawai F, Kimbara K.

J Biosci Bioeng. 2010 Dec;110(6):716-9. doi: 10.1016/j.jbiosc.2010.07.004. Epub 2010 Aug 4.

PMID:
20688563
30.

Flow cytometry-based method for isolating live bacteria with meta-cleavage activity on dihydroxy compounds of biphenyl.

Iijima S, Shimomura Y, Haba Y, Kawai F, Tani A, Kimbara K.

J Biosci Bioeng. 2010 Jun;109(6):645-51. doi: 10.1016/j.jbiosc.2009.11.023. Epub 2009 Dec 24.

PMID:
20471608
31.

Genes involved in novel adaptive aluminum resistance in Rhodotorula glutinis.

Tani A, Kawahara T, Yamamoto Y, Kimbara K, Kawai F.

J Biosci Bioeng. 2010 May;109(5):453-8. doi: 10.1016/j.jbiosc.2009.10.015.

PMID:
20347767
32.

Crystallization and preliminary crystallographic analysis of manganese(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from Bacillus sp. JF8.

Senda M, Hatta T, Kimbara K, Senda T.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Mar 1;66(Pt 3):282-5. doi: 10.1107/S1744309109054396. Epub 2010 Feb 24.

33.

A bacterial biosensor for oxidative stress using the constitutively expressed redox-sensitive protein roGFP2.

Arias-Barreiro CR, Okazaki K, Koutsaftis A, Inayat-Hussain SH, Tani A, Katsuhara M, Kimbara K, Mori IC.

Sensors (Basel). 2010;10(7):6290-306. doi: 10.3390/s100706290. Epub 2010 Jun 24.

34.

The crucial role of mitochondrial regulation in adaptive aluminium resistance in Rhodotorula glutinis.

Tani A, Inoue C, Tanaka Y, Yamamoto Y, Kondo H, Hiradate S, Kimbara K, Kawai F.

Microbiology. 2008 Nov;154(Pt 11):3437-46. doi: 10.1099/mic.0.2007/016048-0.

PMID:
18957597
35.

Involvement of PEG-carboxylate dehydrogenase and glutathione S-transferase in PEG metabolism by Sphingopyxis macrogoltabida strain 103.

Somyoonsap P, Tani A, Charoenpanich J, Minami T, Kimbara K, Kawai F.

Appl Microbiol Biotechnol. 2008 Dec;81(3):473-84. doi: 10.1007/s00253-008-1635-7. Epub 2008 Aug 22.

PMID:
18719904
36.

Proposed oxidative metabolic pathway for polypropylene glycol in Sphingobium sp. strain PW-1.

Hu X, Liu X, Tani A, Kimbara K, Kawai F.

Biosci Biotechnol Biochem. 2008 Apr;72(4):1115-8. Epub 2008 Apr 7.

37.

The pva operon is located on the megaplasmid of Sphingopyxis sp. strain 113P3 and is constitutively expressed, although expression is enhanced by PVA.

Hu X, Mamoto R, Fujioka Y, Tani A, Kimbara K, Kawai F.

Appl Microbiol Biotechnol. 2008 Mar;78(4):685-93. doi: 10.1007/s00253-008-1348-y. Epub 2008 Jan 24.

PMID:
18214469
38.

Polyethylene glycol (PEG)-carboxylate-CoA synthetase is involved in PEG metabolism in Sphingopyxis macrogoltabida strain 103.

Tani A, Somyoonsap P, Minami T, Kimbara K, Kawai F.

Arch Microbiol. 2008 Apr;189(4):407-10. Epub 2007 Nov 6.

PMID:
17985114
39.

Cell surface structure enhancing uptake of polyvinyl alcohol (PVA) is induced by PVA in the PVA-utilizing Sphingopyxis sp. strain 113P3.

Hu X, Mamoto R, Shimomura Y, Kimbara K, Kawai F.

Arch Microbiol. 2007 Sep;188(3):235-41. Epub 2007 Apr 24.

PMID:
17453173
40.

Structure and conservation of a polyethylene glycol-degradative operon in sphingomonads.

Tani A, Charoenpanich J, Mori T, Takeichi M, Kimbara K, Kawai F.

Microbiology. 2007 Feb;153(Pt 2):338-46.

PMID:
17259605
41.

Xenoestrogenic short ethoxy chain nonylphenol is oxidized by a flavoprotein alcohol dehydrogenase from Ensifer sp. strain AS08.

Liu X, Tani A, Kimbara K, Kawai F.

Appl Microbiol Biotechnol. 2007 Jan;73(6):1414-22. Epub 2006 Nov 28.

PMID:
17131148
42.

Isolation of bacteria able to grow on both polyethylene glycol (PEG) and polypropylene glycol (PPG) and their PEG/PPG dehydrogenases.

Hu X, Fukutani A, Liu X, Kimbara K, Kawai F.

Appl Microbiol Biotechnol. 2007 Jan;73(6):1407-13. Epub 2006 Oct 17.

PMID:
17043822
43.

Dual regulation of a polyethylene glycol degradative operon by AraC-type and GalR-type regulators in Sphingopyxis macrogoltabida strain 103.

Charoenpanich J, Tani A, Moriwaki N, Kimbara K, Kawai F.

Microbiology. 2006 Oct;152(Pt 10):3025-34.

PMID:
17005983
44.
45.

Cloning and expression of the gene for periplasmic poly(vinyl alcohol) dehydrogenase from Sphingomonas sp. strain 113P3, a novel-type quinohaemoprotein alcohol dehydrogenase.

Hirota-Mamoto R, Nagai R, Tachibana S, Yasuda M, Tani A, Kimbara K, Kawai F.

Microbiology. 2006 Jul;152(Pt 7):1941-9.

PMID:
16804170
47.

Oxidative stress by biphenyl metabolites induces inhibition of bacterial cell separation.

Yamada T, Shimomura Y, Hiraoka Y, Kimbara K.

Appl Microbiol Biotechnol. 2006 Nov;73(2):452-7. Epub 2006 May 30.

PMID:
16733731
48.
49.
50.

Diversity of 2,3-dihydroxybiphenyl dioxygenase genes in a strong PCB degrader, Rhodococcus sp. strain RHA1.

Sakai M, Masai E, Asami H, Sugiyama K, Kimbara K, Fukuda M.

J Biosci Bioeng. 2002;93(4):421-7.

PMID:
16233225

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