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Items: 1 to 50 of 55

1.

Earth history and the passerine superradiation.

Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, Cuervo AM, Derryberry EP, Glenn TC, Harvey MG, Hosner PA, Joseph L, Kimball RT, Mack AL, Miskelly CM, Peterson AT, Robbins MB, Sheldon FH, Silveira LF, Smith BT, White ND, Moyle RG, Faircloth BC.

Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7916-7925. doi: 10.1073/pnas.1813206116. Epub 2019 Apr 1.

2.

Baseline reinforcement rate and resurgence of destructive behavior.

Fisher WW, Saini V, Greer BD, Sullivan WE, Roane HS, Fuhrman AM, Craig AR, Kimball RT.

J Exp Anal Behav. 2019 Jan;111(1):75-93. doi: 10.1002/jeab.488. Epub 2018 Nov 29.

3.

Insight from an ultraconserved element bait set designed for hemipteran phylogenetics integrated with genomic resources.

Kieran TJ, Gordon ERL, Forthman M, Hoey-Chamberlain R, Kimball RT, Faircloth BC, Weirauch C, Glenn TC.

Mol Phylogenet Evol. 2019 Jan;130:297-303. doi: 10.1016/j.ympev.2018.10.026. Epub 2018 Oct 22.

PMID:
30359745
4.

What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data?

Tamashiro RA, White ND, Braun MJ, Faircloth BC, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2019 Jan;130:132-142. doi: 10.1016/j.ympev.2018.10.008. Epub 2018 Oct 12.

PMID:
30321694
5.

A simple strategy for recovering ultraconserved elements, exons, and introns from low coverage shotgun sequencing of museum specimens: Placement of the partridge genus Tropicoperdix within the galliformes.

Chen, Braun EL, Forthman M, Kimball RT, Zhang Z.

Mol Phylogenet Evol. 2018 Dec;129:304-314. doi: 10.1016/j.ympev.2018.09.005. Epub 2018 Sep 7.

PMID:
30201427
6.

Comparative Genomics Reveals a Burst of Homoplasy-Free Numt Insertions.

Liang B, Wang N, Li N, Kimball RT, Braun EL.

Mol Biol Evol. 2018 Aug 1;35(8):2060-2064. doi: 10.1093/molbev/msy112.

PMID:
29860531
7.

Prevalence of resurgence of destructive behavior when thinning reinforcement schedules during functional communication training.

Briggs AM, Fisher WW, Greer BD, Kimball RT.

J Appl Behav Anal. 2018 Jul;51(3):620-633. doi: 10.1002/jaba.472. Epub 2018 May 17.

8.

Resurgence with and without an alternative response.

Kimball RT, Kelley ME, Podlesnik CA, Forton A, Hinkle B.

J Appl Behav Anal. 2018 Oct;51(4):854-865. doi: 10.1002/jaba.466. Epub 2018 May 10.

PMID:
29749053
9.

Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution.

Tiley GP, Kimball RT, Braun EL, Burleigh JG.

BMC Genomics. 2018 May 8;19(1):336. doi: 10.1186/s12864-018-4711-0.

10.

Mitochondrial genome diversity and population structure of two western honey bee subspecies in the Republic of South Africa.

Eimanifar A, Kimball RT, Braun EL, Ellis JD.

Sci Rep. 2018 Jan 22;8(1):1333. doi: 10.1038/s41598-018-19759-3.

11.

Greater reinforcement rate during training increases spontaneous recovery.

Thrailkill EA, Kimball RT, Kelley ME, Craig AR, Podlesnik CA.

J Exp Anal Behav. 2018 Jan;109(1):238-252. doi: 10.1002/jeab.307. Epub 2018 Jan 4.

PMID:
29314021
12.

Rapid morphological change of a top predator with the invasion of a novel prey.

Cattau CE, Fletcher RJ Jr, Kimball RT, Miller CW, Kitchens WM.

Nat Ecol Evol. 2018 Jan;2(1):108-115. doi: 10.1038/s41559-017-0378-1. Epub 2017 Nov 27.

PMID:
29180705
13.

How do seemingly non-vagile clades accomplish trans-marine dispersal? Trait and dispersal evolution in the landfowl (Aves: Galliformes).

Hosner PA, Tobias JA, Braun EL, Kimball RT.

Proc Biol Sci. 2017 May 17;284(1854). pii: 20170210. doi: 10.1098/rspb.2017.0210.

14.

Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling.

Reddy S, Kimball RT, Pandey A, Hosner PA, Braun MJ, Hackett SJ, Han KL, Harshman J, Huddleston CJ, Kingston S, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Witt CC, Yuri T, Braun EL.

Syst Biol. 2017 Sep 1;66(5):857-879. doi: 10.1093/sysbio/syx041.

PMID:
28369655
15.

Historical relationships of three enigmatic phasianid genera (Aves: Galliformes) inferred using phylogenomic and mitogenomic data.

Wang N, Hosner PA, Liang B, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2017 Apr;109:217-225. doi: 10.1016/j.ympev.2017.01.006. Epub 2017 Jan 11.

PMID:
28088402
16.

The complex evolutionary history of big-eared horseshoe bats (Rhinolophus macrotis complex): insights from genetic, morphological and acoustic data.

Sun K, Kimball RT, Liu T, Wei X, Jin L, Jiang T, Lin A, Feng J.

Sci Rep. 2016 Oct 17;6:35417. doi: 10.1038/srep35417.

17.
18.

Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences.

Persons NW, Hosner PA, Meiklejohn KA, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2016 May;98:123-32. doi: 10.1016/j.ympev.2016.02.003. Epub 2016 Feb 12.

PMID:
26879712
19.

Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods.

Meiklejohn KA, Faircloth BC, Glenn TC, Kimball RT, Braun EL.

Syst Biol. 2016 Jul;65(4):612-27. doi: 10.1093/sysbio/syw014. Epub 2016 Feb 10.

PMID:
26865273
20.

Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes).

Hosner PA, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Mol Biol Evol. 2016 Apr;33(4):1110-25. doi: 10.1093/molbev/msv347. Epub 2015 Dec 29.

PMID:
26715628
21.

Building the avian tree of life using a large-scale, sparse supermatrix.

Burleigh JG, Kimball RT, Braun EL.

Mol Phylogenet Evol. 2015 Mar;84:53-63. doi: 10.1016/j.ympev.2014.12.003. Epub 2014 Dec 27.

PMID:
25550149
22.

The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach.

Sun K, Meiklejohn KA, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Proc Biol Sci. 2014 Sep 7;281(1790). pii: 20140823. doi: 10.1098/rspb.2014.0823.

23.

Incongruence among different mitochondrial regions: a case study using complete mitogenomes.

Meiklejohn KA, Danielson MJ, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2014 Sep;78:314-23. doi: 10.1016/j.ympev.2014.06.003. Epub 2014 Jun 12.

PMID:
24929245
24.

Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix.

Kimball RT, Braun EL.

PeerJ. 2014 Apr 22;2:e361. doi: 10.7717/peerj.361. eCollection 2014.

25.

Geographic variation in the acoustic traits of greater horseshoe bats: testing the importance of drift and ecological selection in evolutionary processes.

Sun K, Luo L, Kimball RT, Wei X, Jin L, Jiang T, Li G, Feng J.

PLoS One. 2013 Aug 8;8(8):e70368. doi: 10.1371/journal.pone.0070368. eCollection 2013.

26.

Identifying localized biases in large datasets: a case study using the avian tree of life.

Kimball RT, Wang N, Heimer-McGinn V, Ferguson C, Braun EL.

Mol Phylogenet Evol. 2013 Dec;69(3):1021-32. doi: 10.1016/j.ympev.2013.05.029. Epub 2013 Jun 20.

PMID:
23791948
27.

Assessing phylogenetic relationships among galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae.

Wang N, Kimball RT, Braun EL, Liang B, Zhang Z.

PLoS One. 2013 May 31;8(5):e64312. doi: 10.1371/journal.pone.0064312. Print 2013.

28.

Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.

Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL.

Biology (Basel). 2013 Mar 13;2(1):419-44. doi: 10.3390/biology2010419.

29.

Ratite nonmonophyly: independent evidence from 40 novel Loci.

Smith JV, Braun EL, Kimball RT.

Syst Biol. 2013 Jan 1;62(1):35-49. doi: 10.1093/sysbio/sys067. Epub 2012 Jul 24.

PMID:
22831877
30.

Testing hypotheses about the sister group of the passeriformes using an independent 30-locus data set.

Wang N, Braun EL, Kimball RT.

Mol Biol Evol. 2012 Feb;29(2):737-50. doi: 10.1093/molbev/msr230. Epub 2011 Sep 22.

PMID:
21940640
31.

A macroevolutionary perspective on multiple sexual traits in the phasianidae (galliformes).

Kimball RT, Mary CM, Braun EL.

Int J Evol Biol. 2011;2011:423938. doi: 10.4061/2011/423938. Epub 2011 May 2.

32.

Homoplastic microinversions and the avian tree of life.

Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Witt CC, Yuri T.

BMC Evol Biol. 2011 May 25;11:141. doi: 10.1186/1471-2148-11-141.

33.

Are transposable element insertions homoplasy free?: an examination using the avian tree of life.

Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Syst Biol. 2011 May;60(3):375-86. doi: 10.1093/sysbio/syq100. Epub 2011 Feb 8. No abstract available.

PMID:
21303823
34.

Dispersers shape fruit diversity in Ficus (Moraceae).

Lomáscolo SB, Levey DJ, Kimball RT, Bolker BM, Alborn HT.

Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14668-72. doi: 10.1073/pnas.1008773107. Epub 2010 Aug 2.

35.

Comparative molecular evolution and phylogenetic utility of 3'-UTRs and introns in Galliformes.

Bonilla AJ, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2010 Aug;56(2):536-42. doi: 10.1016/j.ympev.2010.04.006. Epub 2010 Apr 14.

PMID:
20398778
36.

Molecular and morphological divergence in a pair of bird species and their ectoparasites.

Whiteman NK, Dosanjh VS, Palma RL, Hull JM, Kimball RT, Sánchez P, Sarasola JH, Parker PG.

J Parasitol. 2009 Dec;95(6):1372-82. doi: 10.1645/GE-2009.1.

PMID:
19655998
37.

A well-tested set of primers to amplify regions spread across the avian genome.

Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Smith JV, Witt CC, Yuri T.

Mol Phylogenet Evol. 2009 Mar;50(3):654-60. doi: 10.1016/j.ympev.2008.11.018. Epub 2008 Dec 6. No abstract available.

PMID:
19084073
38.

Phylogenomic evidence for multiple losses of flight in ratite birds.

Harshman J, Braun EL, Braun MJ, Huddleston CJ, Bowie RC, Chojnowski JL, Hackett SJ, Han KL, Kimball RT, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Steppan SJ, Witt CC, Yuri T.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13462-7. doi: 10.1073/pnas.0803242105. Epub 2008 Sep 2.

39.

A phylogenomic study of birds reveals their evolutionary history.

Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Science. 2008 Jun 27;320(5884):1763-8. doi: 10.1126/science.1157704.

40.

Correlated evolution of fig size and color supports the dispersal syndromes hypothesis.

Lomáscolo SB, Speranza P, Kimball RT.

Oecologia. 2008 Jul;156(4):783-96. doi: 10.1007/s00442-008-1023-0. Epub 2008 Mar 27.

PMID:
18386067
41.

Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes.

Chojnowski JL, Kimball RT, Braun EL.

Gene. 2008 Feb 29;410(1):89-96. doi: 10.1016/j.gene.2007.11.016. Epub 2007 Dec 7.

PMID:
18191344
42.

Duplication of accelerated evolution and growth hormone gene in passerine birds.

Yuri T, Kimball RT, Braun EL, Braun MJ.

Mol Biol Evol. 2008 Feb;25(2):352-61. Epub 2007 Nov 28.

PMID:
18048401
44.

Patterns of vertebrate isochore evolution revealed by comparison of expressed mammalian, avian, and crocodilian genes.

Chojnowski JL, Franklin J, Katsu Y, Iguchi T, Guillette LJ Jr, Kimball RT, Braun EL.

J Mol Evol. 2007 Sep;65(3):259-66. Epub 2007 Aug 3.

PMID:
17674077
45.

Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations.

Gibb GC, Kardailsky O, Kimball RT, Braun EL, Penny D.

Mol Biol Evol. 2007 Jan;24(1):269-80. Epub 2006 Oct 24.

PMID:
17062634
46.

Phylogeography of the Galápagos hawk (Buteo galapagoensis): a recent arrival to the Galápagos Islands.

Bollmer JL, Kimball RT, Whiteman NK, Sarasola JH, Parker PG.

Mol Phylogenet Evol. 2006 Apr;39(1):237-47. Epub 2006 Jan 11.

PMID:
16376110
47.

Two-dimensional echocardiographic valve measurements in healthy children: gender-specific differences.

Zilberman MV, Khoury PR, Kimball RT.

Pediatr Cardiol. 2005 Jul-Aug;26(4):356-60. Erratum in: Pediatr Cardiol. 2008 Mar;29(2):475.

PMID:
16374684
48.

Phylogeny of Coreopsideae (Asteraceae) using ITS sequences suggests lability in reproductive characters.

Kimball RT, Crawford DJ.

Mol Phylogenet Evol. 2004 Oct;33(1):127-39.

PMID:
15324843
49.

Evolutionary processes in the genus Coreocarpus: insights from molecular phylogenetics.

Kimball RT, Crawford DJ, Smith EB.

Evolution. 2003 Jan;57(1):52-61.

PMID:
12643567
50.

Examining Basal avian divergences with mitochondrial sequences: model complexity, taxon sampling, and sequence length.

Braun EL, Kimball RT.

Syst Biol. 2002 Aug;51(4):614-25. No abstract available.

PMID:
12228003

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