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Systematic and Comparative Evaluation of Software Programs for Template-Based Modeling of Protein Structures.

Jang WD, Lee SM, Kim HU, Lee SY.

Biotechnol J. 2020 Mar 4:e1900343. doi: 10.1002/biot.201900343. [Epub ahead of print]


MEMOTE for standardized genome-scale metabolic model testing.

Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, García-Jiménez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrgård MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, König M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, Sánchez BJ, Schaap PJ, Malik Sheriff RS, Shoaie S, Sonnenschein N, Teusink B, Vilaça P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C.

Nat Biotechnol. 2020 Mar;38(3):272-276. doi: 10.1038/s41587-020-0446-y. No abstract available.


Setup of a scientific computing environment for computational biology: Simulation of a genome-scale metabolic model of Escherichia coli as an example.

Jeon J, Kim HU.

J Microbiol. 2020 Mar;58(3):227-234. doi: 10.1007/s12275-020-9516-6. Epub 2020 Feb 27.


Increased Production of α-Linolenic Acid in Soybean Seeds by Overexpression of Lesquerella FAD3-1.

Yeom WW, Kim HJ, Lee KR, Cho HS, Kim JY, Jung HW, Oh SW, Jun SE, Kim HU, Chung YS.

Front Plant Sci. 2020 Jan 31;10:1812. doi: 10.3389/fpls.2019.01812. eCollection 2019.


Dual Binding to Orthosteric and Allosteric Sites Enhances the Anticancer Activity of a TRAP1-Targeting Drug.

Hu S, Ferraro M, Thomas AP, Chung JM, Yoon NG, Seol JH, Kim S, Kim HU, An MY, Ok H, Jung HS, Ryu JH, Colombo G, Kang BH.

J Med Chem. 2020 Mar 26;63(6):2930-2940. doi: 10.1021/acs.jmedchem.9b01420. Epub 2020 Mar 2.


Affinity-Enhanced CTC-Capturing Hydrogel Microparticles Fabricated by Degassed Mold Lithography.

Lee NJ, Maeng S, Kim HU, Roh YH, Hwang C, Kim J, Hwang KT, Bong KW.

J Clin Med. 2020 Jan 21;9(2). pii: E301. doi: 10.3390/jcm9020301.


Structural and kinetic insights into flavin-containing monooxygenase and calponin-homology domains in human MICAL3.

Kim J, Lee H, Roh YJ, Kim HU, Shin D, Kim S, Son J, Lee A, Kim M, Park J, Hwang SY, Kim K, Lee YK, Jung HS, Hwang KY, Lee BC.

IUCrJ. 2020 Jan 1;7(Pt 1):90-99. doi: 10.1107/S2052252519015409. eCollection 2020 Jan 1.


Wafer-Scale and Low-Temperature Growth of 1T-WS2 Film for Efficient and Stable Hydrogen Evolution Reaction.

Kim HU, Kanade V, Kim M, Kim KS, An BS, Seok H, Yoo H, Chaney LE, Kim SI, Yang CW, Yeom GY, Whang D, Lee JH, Kim T.

Small. 2020 Feb;16(6):e1905000. doi: 10.1002/smll.201905000. Epub 2020 Jan 9.


Current status of pan-genome analysis for pathogenic bacteria.

Kim Y, Gu C, Kim HU, Lee SY.

Curr Opin Biotechnol. 2019 Dec 28;63:54-62. doi: 10.1016/j.copbio.2019.12.001. [Epub ahead of print] Review.


Degassed micromolding lithography for rapid fabrication of anisotropic hydrogel microparticles with high-resolution and high uniformity.

Kim HU, Lim YJ, Lee HJ, Lee NJ, Bong KW.

Lab Chip. 2020 Jan 7;20(1):74-83. doi: 10.1039/c9lc00828d. Epub 2019 Nov 20.


Machine learning applications in systems metabolic engineering.

Kim GB, Kim WJ, Kim HU, Lee SY.

Curr Opin Biotechnol. 2019 Sep 30;64:1-9. doi: 10.1016/j.copbio.2019.08.010. [Epub ahead of print] Review.


Structural insights into stressosome assembly.

Kwon E, Pathak D, Kim HU, Dahal P, Ha SC, Lee SS, Jeong H, Jeoung D, Chang HW, Jung HS, Kim DY.

IUCrJ. 2019 Aug 21;6(Pt 5):938-947. doi: 10.1107/S205225251900945X. eCollection 2019 Sep 1.


Strigolactone Signaling Genes Showing Differential Expression Patterns in Arabidopsis max Mutants.

Kumar M, Kim I, Kim YK, Heo JB, Suh MC, Kim HU.

Plants (Basel). 2019 Sep 19;8(9). pii: E352. doi: 10.3390/plants8090352.


Ten-Day Concomitant, 10-Day Sequential, and 7-Day Triple Therapy as First-Line Treatment for Helicobacter pylori Infection: A Nationwide Randomized Trial in Korea.

Kim BJ, Lee H, Lee YC, Jeon SW, Kim GH, Kim HS, Sung JK, Lee DH, Kim HU, Park MI, Choi IJ, Yoon SM, Kim SW, Baik GH, Lee JY, Kim JI, Kim SG, Kim J, Lee J, Kim JG, Kim JJ; Korean College of Helicobacter Upper Gastrointestinal Research.

Gut Liver. 2019 Sep 15;13(5):531-540. doi: 10.5009/gnl19136.


A safe and sustainable bacterial cellulose nanofiber separator for lithium rechargeable batteries.

Gwon H, Park K, Chung SC, Kim RH, Kang JK, Ji SM, Kim NJ, Lee S, Ku JH, Do EC, Park S, Kim M, Shim WY, Rhee HS, Kim JY, Kim J, Kim TY, Yamaguchi Y, Iwamuro R, Saito S, Kim G, Jung IS, Park H, Lee C, Lee S, Jeon WS, Jang WD, Kim HU, Lee SY, Im D, Doo SG, Lee SY, Lee HC, Park JH.

Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19288-19293. doi: 10.1073/pnas.1905527116. Epub 2019 Sep 9.


The Arabidopsis MYB96 Transcription Factor Mediates ABA-Dependent Triacylglycerol Accumulation in Vegetative Tissues under Drought Stress Conditions.

Lee HG, Park ME, Park BY, Kim HU, Seo PJ.

Plants (Basel). 2019 Aug 22;8(9). pii: E296. doi: 10.3390/plants8090296.


Genomic and metabolic analysis of Komagataeibacter xylinus DSM 2325 producing bacterial cellulose nanofiber.

Jang WD, Kim TY, Kim HU, Shim WY, Ryu JY, Park JH, Lee SY.

Biotechnol Bioeng. 2019 Dec;116(12):3372-3381. doi: 10.1002/bit.27150. Epub 2019 Sep 3.


Location of Retinal Nerve Fiber Layer Defects in Open-angle Glaucoma and Associated Factors.

Kim HU, Na KI.

Korean J Ophthalmol. 2019 Aug;33(4):379-385. doi: 10.3341/kjo.2018.0094.


Ten-day concomitant, 10-day sequential, and 7-day triple therapy in first-line treatment of Helicobacter pylori infection: a randomized nationwide trial in Korea.

Kim BJ, Lee H, Lee YC, Jeon SW, Kim GH, Kim HS, Sung JK, Lee DH, Kim HU, Park MI, Choi IJ, Yoon SM, Kim SW, Baik GH, Lee JY, Kim JI, Kim SG, Kim J, Lee J, Kim JG, Kim JJ; Korean College of Helicobacter and Upper Gastrointestinal Research.

Gut Liver. 2019 Jul 22. doi: 10.5009/gnl19136. [Epub ahead of print]


Deep learning enables high-quality and high-throughput prediction of enzyme commission numbers.

Ryu JY, Kim HU, Lee SY.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):13996-14001. doi: 10.1073/pnas.1821905116. Epub 2019 Jun 20.


Current status and applications of genome-scale metabolic models.

Gu C, Kim GB, Kim WJ, Kim HU, Lee SY.

Genome Biol. 2019 Jun 13;20(1):121. doi: 10.1186/s13059-019-1730-3. Review.


Role of the INDETERMINATE DOMAIN Genes in Plants.

Kumar M, Le DT, Hwang S, Seo PJ, Kim HU.

Int J Mol Sci. 2019 May 9;20(9). pii: E2286. doi: 10.3390/ijms20092286. Review.


Metabolic Engineering Strategies for the Enhanced Microalgal Production of Long-Chain Polyunsaturated Fatty Acids (LC-PUFAs).

Ghiffary MR, Kim HU, Chang YK.

Biotechnol J. 2019 Jun;14(6):e1900043. doi: 10.1002/biot.201900043. Epub 2019 May 27. Review.


MiR-135-5p-p62 Axis Regulates Autophagic Flux, Tumorigenic Potential, and Cellular Interactions Mediated by Extracellular Vesicles During Allergic Inflammation.

Kim M, Park Y, Kwon Y, Kim Y, Byun J, Jeong MS, Kim HU, Jung HS, Mun JY, Jeoung D.

Front Immunol. 2019 Apr 5;10:738. doi: 10.3389/fimmu.2019.00738. eCollection 2019.


Structural analysis of the flagellar capping protein FliD from Helicobacter pylori.

Cho SY, Song WS, Oh HB, Kim HU, Jung HS, Yoon SI.

Biochem Biophys Res Commun. 2019 Jun 18;514(1):98-104. doi: 10.1016/j.bbrc.2019.04.065. Epub 2019 Apr 22.


Functional efficacy analysis of Angelica gigas Nakai on chicken myoblast cells through cell-based in vitro assay.

Lee JH, Park JW, Seo ES, Kim HU, Kim SW, Han JS, Jun HS, Kim SJ, Park TS, Park BC.

Anim Sci J. 2019 Jul;90(7):903-912. doi: 10.1111/asj.13212. Epub 2019 Apr 22.


Asprosin attenuates insulin signaling pathway through PKCδ-activated ER stress and inflammation in skeletal muscle.

Jung TW, Kim HC, Kim HU, Park T, Park J, Kim U, Kim MK, Jeong JH.

J Cell Physiol. 2019 Nov;234(11):20888-20899. doi: 10.1002/jcp.28694. Epub 2019 Apr 17.


Tinea capitis in adults: A 18-year retrospective, single-centre study in Korea.

Park SK, Park SW, Yun SK, Kim HU, Park J.

Mycoses. 2019 Jul;62(7):609-616. doi: 10.1111/myc.12916. Epub 2019 May 1.


Effect of Copper Foil Crystal Orientation on Graphene Quality Synthesized by Chemical Vapor Deposition.

Jin Y, Kim HU, Hong S, Shin C, Kulkarni A, Kim T.

J Nanosci Nanotechnol. 2019 Sep 1;19(9):5942-5948. doi: 10.1166/jnn.2019.16599.


High accumulation of γ-linolenic acid and Stearidonic acid in transgenic Perilla (Perilla frutescens var. frutescens) seeds.

Lee KR, Kim KH, Kim JB, Hong SB, Jeon I, Kim HU, Lee MH, Kim JK.

BMC Plant Biol. 2019 Apr 1;19(1):120. doi: 10.1186/s12870-019-1713-2.


Erratum: Publisher's Note: 'Low temperature flow lithography' [Biomicrofluidics 12, 054105 (2018)].

Lee H, Roh YH, Kim HU, Bong KW.

Biomicrofluidics. 2018 Dec 21;12(6):069901. doi: 10.1063/1.5084274. eCollection 2018 Nov.


Enhanced production of poly‑3‑hydroxybutyrate (PHB) by expression of response regulator DR1558 in recombinant Escherichia coli.

Park SH, Kim GB, Kim HU, Park SJ, Choi JI.

Int J Biol Macromol. 2019 Jun 15;131:29-35. doi: 10.1016/j.ijbiomac.2019.03.044. Epub 2019 Mar 7.


Sol-Gel Assisted Isotropic Morphological Progression in Nanostructured MoO₃ and Allied Investigations on Photocatalytic Dye-Degradation.

Qureshi N, Shinde M, Arbuj S, Rane S, Bhalerao A, Kim HU, Kim T, Amalnerkar D.

J Nanosci Nanotechnol. 2019 Jun 1;19(6):3479-3486. doi: 10.1166/jnn.2019.16139.


Cutaneous Carcinosarcoma: a Clinicopathologic and Immunohistochemical Analysis of 11 Korean Cases.

Kwak HB, Park J, Kim HU, Nam KH, Yun SK.

J Korean Med Sci. 2018 Dec 26;34(1):e5. doi: 10.3346/jkms.2019.34.e5. eCollection 2019 Jan 7.


Data for quantum phonon transport in strained carbon atomic chains bridging graphene and graphene nanoribbon electrodes.

Kim HS, Kim TH, Kim YH.

Data Brief. 2018 Nov 15;21:2421-2429. doi: 10.1016/j.dib.2018.11.049. eCollection 2018 Dec.


Effects of Angelica gigas Nakai on the production of decursin- and decursinol angelate-enriched eggs.

Fontamillas GAD, Kim SW, Kim HU, Kim SJ, Kim JG, Park TS, Park BC.

J Sci Food Agric. 2019 Apr;99(6):3117-3123. doi: 10.1002/jsfa.9526. Epub 2019 Jan 31.


Multiplexed immunoassay using post-synthesis functionalized hydrogel microparticles.

Lee HJ, Roh YH, Kim HU, Kim SM, Bong KW.

Lab Chip. 2018 Dec 18;19(1):111-119. doi: 10.1039/c8lc01160e.


Low temperature flow lithography.

Lee H, Roh YH, Kim HU, Bong KW.

Biomicrofluidics. 2018 Sep 24;12(5):054105. doi: 10.1063/1.5047016. eCollection 2018 Sep. Erratum in: Biomicrofluidics. 2018 Dec 21;12(6):069901.


Development of 17 polymorphic microsatellite loci from Jeju striped field mouse, Apodemus agrarius chejuensis (Rodentia: Muridae), by 454 pyrosequencing.

Kim HN, Kim HU, Jo YS, Jung J.

Hereditas. 2018 Sep 26;155:30. doi: 10.1186/s41065-018-0070-8. eCollection 2018.


Microfluidic fabrication of biocompatible poly(N-vinylcaprolactam)-based microcarriers for modulated thermo-responsive drug release.

Roh YH, Moon JY, Hong EJ, Kim HU, Shim MS, Bong KW.

Colloids Surf B Biointerfaces. 2018 Dec 1;172:380-386. doi: 10.1016/j.colsurfb.2018.08.059. Epub 2018 Aug 29.


Metabolic engineering of Corynebacterium glutamicum for the production of glutaric acid, a C5 dicarboxylic acid platform chemical.

Kim HT, Khang TU, Baritugo KA, Hyun SM, Kang KH, Jung SH, Song BK, Park K, Oh MK, Kim GB, Kim HU, Lee SY, Park SJ, Joo JC.

Metab Eng. 2019 Jan;51:99-109. doi: 10.1016/j.ymben.2018.08.007. Epub 2018 Aug 23.


Genome-Scale Metabolic Reconstruction of Actinomycetes for Antibiotics Production.

Mohite OS, Weber T, Kim HU, Lee SY.

Biotechnol J. 2019 Jan;14(1):e1800377. doi: 10.1002/biot.201800377. Epub 2018 Sep 9. Review.


Thickness-dependent humidity sensing by poly(vinyl alcohol) stabilized Au-Ag and Ag-Au core-shell bimetallic nanomorph resistors.

Adhyapak P, Aiyer R, Dugasani SR, Kim HU, Song CK, Vinu A, Renugopalakrishnan V, Park SH, Kim T, Lee H, Amalnerkar D.

R Soc Open Sci. 2018 Jun 6;5(6):171986. doi: 10.1098/rsos.171986. eCollection 2018 Jun.


Fabrication of Nanoreaction Clusters with Dual-Functionalized Protein Cage Nanobuilding Blocks.

Choi H, Choi B, Kim GJ, Kim HU, Kim H, Jung HS, Kang S.

Small. 2018 Aug;14(35):e1801488. doi: 10.1002/smll.201801488. Epub 2018 Jul 31.


Role of Hair Prostheses (Wigs) in Patients with Severe Alopecia Areata.

Park J, Kim DW, Park SK, Yun SK, Kim HU.

Ann Dermatol. 2018 Aug;30(4):505-507. doi: 10.5021/ad.2018.30.4.505. Epub 2018 Jun 28. No abstract available.


Analysis of nano-crystals: Evaluation of heavy metal-embedded biological specimen by high voltage electron microscopy.

Jeong H, Yoo SJ, Won J, Lee HJ, Chung JM, Kim HU, Kim GJ, Kim JG, Jung HS, Hyun J.

Ultramicroscopy. 2018 Nov;194:35-39. doi: 10.1016/j.ultramic.2018.07.003. Epub 2018 Jul 10.


The actin bundling activity of actin bundling protein 34 is inhibited by calcium binding to the EF2.

Chung JM, Kim HU, Kim GJ, Jeoung D, Jung HS.

Biochem Biophys Res Commun. 2018 Sep 10;503(3):1836-1840. doi: 10.1016/j.bbrc.2018.07.122. Epub 2018 Jul 27.


[Esophageal Foreign Body: Treatment and Complications].

Boo SJ, Kim HU.

Korean J Gastroenterol. 2018 Jul 25;72(1):1-5. doi: 10.4166/kjg.2018.72.1.1. Review. Korean.


Metabolic engineering of Escherichia coli for the enhanced production of l-tyrosine.

Kim B, Binkley R, Kim HU, Lee SY.

Biotechnol Bioeng. 2018 Oct;115(10):2554-2564. doi: 10.1002/bit.26797. Epub 2018 Aug 1.


Genome-Wide Identification and Expression Analyses of the Fibrillin Family Genes Suggest Their Involvement in Photoprotection in Cucumber.

Kim I, Lee SC, Kim EH, Song K, Yang TJ, Kim HU.

Plants (Basel). 2018 Jun 27;7(3). pii: E50. doi: 10.3390/plants7030050.

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