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Items: 1 to 50 of 191

1.

Using Microarrays to Interrogate Microenvironmental Impact on Cellular Phenotypes in Cancer.

Smith R, Devlin K, Kilburn D, Gross S, Sudar D, Bucher E, Nederlof M, Dane M, Gray JW, Heiser L, Korkola JE.

J Vis Exp. 2019 May 21;(147). doi: 10.3791/58957.

2.

Effects of Preferential Counterion Interactions on the Specificity of RNA Folding.

Roh JH, Kilburn D, Behrouzi R, Sung W, Briber RM, Woodson SA.

J Phys Chem Lett. 2018 Oct 4;9(19):5726-5732. doi: 10.1021/acs.jpclett.8b02086. Epub 2018 Sep 18.

3.

Microenvironment-Mediated Mechanisms of Resistance to HER2 Inhibitors Differ between HER2+ Breast Cancer Subtypes.

Watson SS, Dane M, Chin K, Tatarova Z, Liu M, Liby T, Thompson W, Smith R, Nederlof M, Bucher E, Kilburn D, Whitman M, Sudar D, Mills GB, Heiser LM, Jonas O, Gray JW, Korkola JE.

Cell Syst. 2018 Mar 28;6(3):329-342.e6. doi: 10.1016/j.cels.2018.02.001. Epub 2018 Mar 14.

4.

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Keenan AB, Jenkins SL, Jagodnik KM, Koplev S, He E, Torre D, Wang Z, Dohlman AB, Silverstein MC, Lachmann A, Kuleshov MV, Ma'ayan A, Stathias V, Terryn R, Cooper D, Forlin M, Koleti A, Vidovic D, Chung C, Schürer SC, Vasiliauskas J, Pilarczyk M, Shamsaei B, Fazel M, Ren Y, Niu W, Clark NA, White S, Mahi N, Zhang L, Kouril M, Reichard JF, Sivaganesan S, Medvedovic M, Meller J, Koch RJ, Birtwistle MR, Iyengar R, Sobie EA, Azeloglu EU, Kaye J, Osterloh J, Haston K, Kalra J, Finkbiener S, Li J, Milani P, Adam M, Escalante-Chong R, Sachs K, Lenail A, Ramamoorthy D, Fraenkel E, Daigle G, Hussain U, Coye A, Rothstein J, Sareen D, Ornelas L, Banuelos M, Mandefro B, Ho R, Svendsen CN, Lim RG, Stocksdale J, Casale MS, Thompson TG, Wu J, Thompson LM, Dardov V, Venkatraman V, Matlock A, Van Eyk JE, Jaffe JD, Papanastasiou M, Subramanian A, Golub TR, Erickson SD, Fallahi-Sichani M, Hafner M, Gray NS, Lin JR, Mills CE, Muhlich JL, Niepel M, Shamu CE, Williams EH, Wrobel D, Sorger PK, Heiser LM, Gray JW, Korkola JE, Mills GB, LaBarge M, Feiler HS, Dane MA, Bucher E, Nederlof M, Sudar D, Gross S, Kilburn DF, Smith R, Devlin K, Margolis R, Derr L, Lee A, Pillai A.

Cell Syst. 2018 Jan 24;6(1):13-24. doi: 10.1016/j.cels.2017.11.001. Epub 2017 Nov 29. Review.

5.

Determination of absolute expression profiles using multiplexed miRNA analysis.

Song Y, Kilburn D, Song JH, Cheng Y, Saeui CT, Cheung DG, Croce CM, Yarema KJ, Meltzer SJ, Liu KJ, Wang TH.

PLoS One. 2017 Jul 13;12(7):e0180988. doi: 10.1371/journal.pone.0180988. eCollection 2017.

6.

Early Experience with Laparoscopic Frey Procedure for Chronic Pancreatitis: a Case Series and Review of Literature.

Kilburn DJ, Chiow AKH, Leung U, Siriwardhane M, Cavallucci DJ, Bryant R, O'Rourke NA.

J Gastrointest Surg. 2017 May;21(5):904-909. doi: 10.1007/s11605-016-3343-4. Epub 2016 Dec 26. Review.

PMID:
28025771
7.

A Multiplex Ligation Assay for miRNA Copy Number Profiling.

Kilburn D, Song Y, Wang TH, Liu KJ.

Methods Mol Biol. 2017;1509:185-193.

PMID:
27826928
8.

Entropic stabilization of folded RNA in crowded solutions measured by SAXS.

Kilburn D, Behrouzi R, Lee HT, Sarkar K, Briber RM, Woodson SA.

Nucleic Acids Res. 2016 Nov 2;44(19):9452-9461. Epub 2016 Jul 4.

9.

The Complex Relationship of Extracorporeal Membrane Oxygenation and Acute Kidney Injury: Causation or Association?

Kilburn DJ, Shekar K, Fraser JF.

Biomed Res Int. 2016;2016:1094296. doi: 10.1155/2016/1094296. Epub 2016 Feb 24. Review.

10.

Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme.

Lee HT, Kilburn D, Behrouzi R, Briber RM, Woodson SA.

Nucleic Acids Res. 2015 Jan;43(2):1170-6. doi: 10.1093/nar/gku1335. Epub 2014 Dec 24.

11.

Laparoscopic approach to a planned two-stage hepatectomy for bilobar colorectal liver metastases.

Kilburn DJ, Chiow AK, Lewin J, Kienzle N, Cavallucci DJ, Bryant R, O'Rourke N.

ANZ J Surg. 2016 Oct;86(10):811-815. doi: 10.1111/ans.12748. Epub 2014 Jul 2.

PMID:
24990234
12.

Increased ribozyme activity in crowded solutions.

Desai R, Kilburn D, Lee HT, Woodson SA.

J Biol Chem. 2014 Jan 31;289(5):2972-7. doi: 10.1074/jbc.M113.527861. Epub 2013 Dec 11.

13.

Crowders perturb the entropy of RNA energy landscapes to favor folding.

Kilburn D, Roh JH, Behrouzi R, Briber RM, Woodson SA.

J Am Chem Soc. 2013 Jul 10;135(27):10055-63. doi: 10.1021/ja4030098. Epub 2013 Jul 1.

14.

Cooperative tertiary interaction network guides RNA folding.

Behrouzi R, Roh JH, Kilburn D, Briber RM, Woodson SA.

Cell. 2012 Apr 13;149(2):348-57. doi: 10.1016/j.cell.2012.01.057.

15.

Molecular crowding stabilizes folded RNA structure by the excluded volume effect.

Kilburn D, Roh JH, Guo L, Briber RM, Woodson SA.

J Am Chem Soc. 2010 Jun 30;132(25):8690-6. doi: 10.1021/ja101500g.

16.

Direct measurement of the kinetics of CBM9 fusion-tag bioprocessing using luminescence resonance energy transfer.

Kavoosi M, Creagh AL, Turner RF, Kilburn DG, Haynes CA.

Biotechnol Prog. 2009 May-Jun;25(3):874-81. doi: 10.1002/btpr.88.

PMID:
19496182
17.

Structural evolution of the dihydrate to anhydrate crystalline transition of trehalose as measured by wide-angle X-ray scattering.

Kilburn D, Sokol PE.

J Phys Chem B. 2009 Feb 19;113(7):2201-6. doi: 10.1021/jp807704n.

PMID:
19166278
18.

Production of a self-activating CBM-factor X fusion protein in a stable transformed Sf9 insect cell line using high cell density perfusion culture.

Gorenflo VM, Pfeifer TA, Lesnicki G, Kwan EM, Grigliatti TA, Kilburn DG, Piret JM.

Cytotechnology. 2004 Mar;44(3):93-102. doi: 10.1007/s10616-005-0703-4.

19.

On-line monitoring and control of methanol concentration in shake-flask cultures of Pichia pastoris.

Guarna MM, Lesnicki GJ, Tam BM, Robinson J, Radziminski CZ, Hasenwinkle D, Boraston A, Jervis E, MacGillivray RT, Turner RF, Kilburn DG.

Biotechnol Bioeng. 1997 Nov 5;56(3):279-86. doi: 10.1002/(SICI)1097-0290(19971105)56:3<279::AID-BIT5>3.0.CO;2-G.

PMID:
18636643
20.

Very high-level production and export in Escherichia coli of a cellulose binding domain for use in a generic secretion-affinity fusion system.

Hasenwinkle D, Jervis E, Kops O, Liu C, Lesnicki G, Haynes CA, Kilburn DG.

Biotechnol Bioeng. 1997 Sep 20;55(6):854-63. doi: 10.1002/(SICI)1097-0290(19970920)55:6<854::AID-BIT4>3.0.CO;2-F.

PMID:
18636596
21.

Monolayer sorption of neon in mesoporous silica glass as monitored by wide-angle x-ray scattering.

Kilburn D, Sokol PE.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Feb;77(2 Pt 1):021603. Epub 2008 Feb 28.

PMID:
18352035
22.

Mechanically stable porous cellulose media for affinity purification of family 9 cellulose-binding module-tagged fusion proteins.

Kavoosi M, Lam D, Bryan J, Kilburn DG, Haynes CA.

J Chromatogr A. 2007 Dec 21;1175(2):187-96. Epub 2007 Aug 7.

PMID:
18023448
23.

Molecular packing in amorphous carbohydrate matrixes.

Townrow S, Kilburn D, Alam A, Ubbink J.

J Phys Chem B. 2007 Nov 8;111(44):12643-8. Epub 2007 Oct 18.

PMID:
17944508
24.
25.

Strategy for selecting and characterizing linker peptides for CBM9-tagged fusion proteins expressed in Escherichia coli.

Kavoosi M, Creagh AL, Kilburn DG, Haynes CA.

Biotechnol Bioeng. 2007 Oct 15;98(3):599-610.

PMID:
17394253
26.

Evaluation of cellulase preparations for hydrolysis of hardwood substrates.

Berlin A, Gilkes N, Kilburn D, Maximenko V, Bura R, Markov A, Skomarovsky A, Gusakov A, Sinitsyn A, Okunev O, Solovieva I, Saddler JN.

Appl Biochem Biotechnol. 2006 Spring;129-132:528-45.

PMID:
16915667
27.

Organization and mobility of water in amorphous and crystalline trehalose.

Kilburn D, Townrow S, Meunier V, Richardson R, Alam A, Ubbink J.

Nat Mater. 2006 Aug;5(8):632-5. Epub 2006 Jul 9.

PMID:
16845422
28.

N-Glycosidase-carbohydrate-binding module fusion proteins as immobilized enzymes for protein deglycosylation.

Kwan EM, Boraston AB, McLean BW, Kilburn DG, Warren RA.

Protein Eng Des Sel. 2005 Oct;18(10):497-501. Epub 2005 Sep 9.

PMID:
16155117
29.

Dynamic localization and persistent stimulation of factor-dependent cells by a stem cell factor / cellulose binding domain fusion protein.

Jervis EJ, Guarna MM, Doheny JG, Haynes CA, Kilburn DG.

Biotechnol Bioeng. 2005 Aug 5;91(3):314-24.

PMID:
15948140
30.

Enzymatic hydrolysis of steam-exploded and ethanol organosolv-pretreated Douglas-Firby novel and commercial fungal cellulases.

Kurabi A, Berlin A, Gilkes N, Kilburn D, Bura R, Robinson J, Markov A, Skomarovsky A, Gusakov A, Okunev O, Sinitsyn A, Gregg D, Xie D, Saddler J.

Appl Biochem Biotechnol. 2005 Spring;121-124:219-30.

PMID:
15917601
31.

Weak lignin-binding enzymes: a novel approach to improve activity of cellulases for hydrolysis of lignocellulosics.

Berlin A, Gilkes N, Kurabi A, Bura R, Tu M, Kilburn D, Saddler J.

Appl Biochem Biotechnol. 2005 Spring;121-124:163-70.

PMID:
15917596
32.

Carbohydrate polymers in amorphous states: an integrated thermodynamic and nanostructural investigation.

Kilburn D, Claude J, Schweizer T, Alam A, Ubbink J.

Biomacromolecules. 2005 Mar-Apr;6(2):864-79.

PMID:
15762653
33.

Inexpensive and generic affinity purification of recombinant proteins using a family 2a CBM fusion tag.

Rodriguez B, Kavoosi M, Koska J, Creagh AL, Kilburn DG, Haynes CA.

Biotechnol Prog. 2004 Sep-Oct;20(5):1479-89.

PMID:
15458333
34.

Inexpensive one-step purification of polypeptides expressed in Escherichia coli as fusions with the family 9 carbohydrate-binding module of xylanase 10A from T. maritima.

Kavoosi M, Meijer J, Kwan E, Creagh AL, Kilburn DG, Haynes CA.

J Chromatogr B Analyt Technol Biomed Life Sci. 2004 Jul 25;807(1):87-94.

PMID:
15177165
35.

Kirrel2, a novel immunoglobulin superfamily gene expressed primarily in beta cells of the pancreatic islets.

Sun C, Kilburn D, Lukashin A, Crowell T, Gardner H, Brundiers R, Diefenbach B, Carulli JP.

Genomics. 2003 Aug;82(2):130-42.

PMID:
12837264
36.

O-glycosylation of a recombinant carbohydrate-binding module mutant secreted by Pichia pastoris.

Boraston AB, Sandercock L, Warren RA, Kilburn DG.

J Mol Microbiol Biotechnol. 2003;5(1):29-36.

PMID:
12673059
37.

Structure and ligand binding of carbohydrate-binding module CsCBM6-3 reveals similarities with fucose-specific lectins and "galactose-binding" domains.

Boraston AB, Notenboom V, Warren RA, Kilburn DG, Rose DR, Davies G.

J Mol Biol. 2003 Mar 28;327(3):659-69.

PMID:
12634060
38.

Effects of methanol concentration on expression levels of recombinant protein in fed-batch cultures of Pichia methanolica.

Mayson BE, Kilburn DG, Zamost BL, Raymond CK, Lesnicki GJ.

Biotechnol Bioeng. 2003 Feb 5;81(3):291-8.

PMID:
12474251
39.

Recognition and hydrolysis of noncrystalline cellulose.

Boraston AB, Kwan E, Chiu P, Warren RA, Kilburn DG.

J Biol Chem. 2003 Feb 21;278(8):6120-7. Epub 2002 Nov 8.

40.

Self-activating factor X derivative fused to the C-terminus of a cellulose-binding module: Production and properties.

Kwan E, Guarna MM, Boraston AB, Gilkes NR, Haynes CA, Kilburn DG, Warren RA.

Biotechnol Bioeng. 2002 Sep 30;79(7):724-32.

PMID:
12209795
41.

Carbohydrate-binding modules recognize fine substructures of cellulose.

McLean BW, Boraston AB, Brouwer D, Sanaie N, Fyfe CA, Warren RA, Kilburn DG, Haynes CA.

J Biol Chem. 2002 Dec 27;277(52):50245-54. Epub 2002 Aug 20.

42.

Differential oligosaccharide recognition by evolutionarily-related beta-1,4 and beta-1,3 glucan-binding modules.

Boraston AB, Nurizzo D, Notenboom V, Ducros V, Rose DR, Kilburn DG, Davies GJ.

J Mol Biol. 2002 Jun 21;319(5):1143-56.

PMID:
12079353
43.

Do cellulose binding domains increase substrate accessibility?

Esteghlalian AR, Srivastava V, Gilkes NR, Kilburn DG, Warren RA, Saddle JN.

Appl Biochem Biotechnol. 2001 Spring;91-93:575-92.

PMID:
11963886
44.
45.

Co-operative binding of triplicate carbohydrate-binding modules from a thermophilic xylanase.

Boraston AB, McLean BW, Chen G, Li A, Warren RA, Kilburn DG.

Mol Microbiol. 2002 Jan;43(1):187-94.

46.

Identification and glucan-binding properties of a new carbohydrate-binding module family.

Boraston AB, Ghaffari M, Warren RA, Kilburn DG.

Biochem J. 2002 Jan 1;361(Pt 1):35-40.

47.

Recognition of cello-oligosaccharides by a family 17 carbohydrate-binding module: an X-ray crystallographic, thermodynamic and mutagenic study.

Notenboom V, Boraston AB, Chiu P, Freelove AC, Kilburn DG, Rose DR.

J Mol Biol. 2001 Dec 7;314(4):797-806.

PMID:
11733998
48.

beta-1,3-Glucan binding by a thermostable carbohydrate-binding module from Thermotoga maritima.

Boraston AB, Warren RA, Kilburn DG.

Biochemistry. 2001 Dec 4;40(48):14679-85.

PMID:
11724582
49.

Expression analysis of a modified factor X in stably transformed insect cell lines.

Pfeifer TA, Guarna MM, Kwan EM, Lesnicki G, Theilmann DA, Grigliatti TA, Kilburn DG.

Protein Expr Purif. 2001 Nov;23(2):233-41.

PMID:
11676597

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