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Items: 19

1.

LiSEQ - whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe.

Painset A, Björkman JT, Kiil K, Guillier L, Mariet JF, Félix B, Amar C, Rotariu O, Roussel S, Perez-Reche F, Brisse S, Moura A, Lecuit M, Forbes K, Strachan N, Grant K, Møller-Nielsen E, Dallman TJ.

Microb Genom. 2019 Feb;5(2). doi: 10.1099/mgen.0.000257. Epub 2019 Feb 18.

2.

Diversity and Population Overlap between Avian and Human Escherichia coli Belonging to Sequence Type 95.

Jørgensen SL, Stegger M, Kudirkiene E, Lilje B, Poulsen LL, Ronco T, Pires Dos Santos T, Kiil K, Bisgaard M, Pedersen K, Nolan LK, Price LB, Olsen RH, Andersen PS, Christensen H.

mSphere. 2019 Jan 16;4(1). pii: e00333-18. doi: 10.1128/mSphere.00333-18.

3.

A high number of IgG4-positive plasma cells rules out nodular lymphocyte predominant Hodgkin lymphoma.

Kiil K, Bein J, Schuhmacher B, Thurner L, Schneider M, Hansmann ML, Hartmann S.

Virchows Arch. 2018 Dec;473(6):759-764. doi: 10.1007/s00428-018-2460-8. Epub 2018 Sep 26.

PMID:
30259184
4.

Whole-genome sequencing of bloodstream Staphylococcus aureus isolates does not distinguish bacteraemia from endocarditis.

Lilje B, Rasmussen RV, Dahl A, Stegger M, Skov RL, Fowler VG, Ng KL, Kiil K, Larsen AR, Petersen A, Johansen HK, Schønheyder HC, Arpi M, Rosenvinge FS, Korup E, Høst U, Hassager C, Gill SUA, Hansen TF, Johannesen TB, Smit J, Søgaard P, Skytt Andersen P, Eske-Bruun N.

Microb Genom. 2017 Nov;3(11). doi: 10.1099/mgen.0.000138.

5.

Gene-Based Pathogen Detection: Can We Use qPCR to Predict the Outcome of Diagnostic Metagenomics?

Andersen SC, Fachmann MSR, Kiil K, Møller Nielsen E, Hoorfar J.

Genes (Basel). 2017 Nov 20;8(11). pii: E332. doi: 10.3390/genes8110332.

6.

Whole-genome comparison of urinary pathogenic Escherichia coli and faecal isolates of UTI patients and healthy controls.

Nielsen KL, Stegger M, Kiil K, Godfrey PA, Feldgarden M, Lilje B, Andersen PS, Frimodt-Møller N.

Int J Med Microbiol. 2017 Dec;307(8):497-507. doi: 10.1016/j.ijmm.2017.09.007. Epub 2017 Sep 14.

7.

Plasmid-borne colistin resistance gene mcr-3 in Salmonella isolates from human infections, Denmark, 2009-17.

Litrup E, Kiil K, Hammerum AM, Roer L, Nielsen EM, Torpdahl M.

Euro Surveill. 2017 Aug 3;22(31). pii: 30587. doi: 10.2807/1560-7917.ES.2017.22.31.30587.

8.

Towards diagnostic metagenomics of Campylobacter in fecal samples.

Andersen SC, Kiil K, Harder CB, Josefsen MH, Persson S, Nielsen EM, Hoorfar J.

BMC Microbiol. 2017 Jun 8;17(1):133. doi: 10.1186/s12866-017-1041-3.

9.

Whole-genome Sequencing Used to Investigate a Nationwide Outbreak of Listeriosis Caused by Ready-to-eat Delicatessen Meat, Denmark, 2014.

Kvistholm Jensen A, Nielsen EM, Björkman JT, Jensen T, Müller L, Persson S, Bjerager G, Perge A, Krause TG, Kiil K, Sørensen G, Andersen JK, Mølbak K, Ethelberg S.

Clin Infect Dis. 2016 Jul 1;63(1):64-70. doi: 10.1093/cid/ciw192. Epub 2016 Mar 29.

PMID:
27025820
10.

Molecular Typing and Epidemiology of Human Listeriosis Cases, Denmark, 2002-2012.

Jensen AK, Björkman JT, Ethelberg S, Kiil K, Kemp M, Nielsen EM.

Emerg Infect Dis. 2016 Apr;22(4):625-33. doi: 10.3201/eid2204.150998.

11.

Origin and evolution of European community-acquired methicillin-resistant Staphylococcus aureus.

Stegger M, Wirth T, Andersen PS, Skov RL, De Grassi A, Simões PM, Tristan A, Petersen A, Aziz M, Kiil K, Cirković I, Udo EE, del Campo R, Vuopio-Varkila J, Ahmad N, Tokajian S, Peters G, Schaumburg F, Olsson-Liljequist B, Givskov M, Driebe EE, Vigh HE, Shittu A, Ramdani-Bougessa N, Rasigade JP, Price LB, Vandenesch F, Larsen AR, Laurent F.

MBio. 2014 Aug 26;5(5):e01044-14. doi: 10.1128/mBio.01044-14.

12.

Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes.

Lohmueller KE, Sparsø T, Li Q, Andersson E, Korneliussen T, Albrechtsen A, Banasik K, Grarup N, Hallgrimsdottir I, Kiil K, Kilpeläinen TO, Krarup NT, Pers TH, Sanchez G, Hu Y, Degiorgio M, Jørgensen T, Sandbæk A, Lauritzen T, Brunak S, Kristiansen K, Li Y, Hansen T, Wang J, Nielsen R, Pedersen O.

Am J Hum Genet. 2013 Dec 5;93(6):1072-86. doi: 10.1016/j.ajhg.2013.11.005. Epub 2013 Nov 27. Erratum in: Am J Hum Genet. 2014 Mar 6;94(3):479.

13.

Genome analysis of Staphylococcus aureus ST291, a double locus variant of ST398, reveals a distinct genetic lineage.

Stegger M, Aziz M, Chroboczek T, Price LB, Ronco T, Kiil K, Skov RL, Laurent F, Andersen PS.

PLoS One. 2013 May 21;8(5):e63008. doi: 10.1371/journal.pone.0063008. Print 2013.

14.

The genus burkholderia: analysis of 56 genomic sequences.

Ussery DW, Kiil K, Lagesen K, Sicheritz-Pontén T, Bohlin J, Wassenaar TM.

Genome Dyn. 2009;6:140-157. doi: 10.1159/000235768. Epub 2009 Aug 19.

PMID:
19696499
15.

Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae.

Lavín JL, Kiil K, Resano O, Ussery DW, Oguiza JA.

BMC Genomics. 2007 Oct 31;8:397.

16.

Design of a seven-genome Escherichia coli microarray for comparative genomic profiling.

Willenbrock H, Petersen A, Sekse C, Kiil K, Wasteson Y, Ussery DW.

J Bacteriol. 2006 Nov;188(22):7713-21. Epub 2006 Sep 8.

17.

Genome update: purine strand bias in 280 bacterial genomes.

Champ PC, Binnewies TT, Nielsen N, Zinman G, Kiil K, Wu H, Bohlin J, Ussery DW.

Microbiology. 2006 Mar;152(Pt 3):579-83. No abstract available.

PMID:
16514138
18.

Genome update: distribution of two-component transduction systems in 250 bacterial genomes.

Kiil K, Ferchaud JB, David C, Binnewies TT, Wu H, Sicheritz-Pontén T, Willenbrock H, Ussery DW.

Microbiology. 2005 Nov;151(Pt 11):3447-52. No abstract available.

PMID:
16272367
19.

Extracytoplasmic function sigma factors in Pseudomonas syringae.

Oguiza JA, Kiil K, Ussery DW.

Trends Microbiol. 2005 Dec;13(12):565-8. Epub 2005 Oct 28.

PMID:
16257528

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