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Items: 24

1.

SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma.

Sakthikumar S, Elvers I, Kim J, Arendt ML, Thomas R, Turner-Maier J, Swofford R, Johnson J, Schumacher SE, Alföldi J, Axelsson E, Couto CG, Kisseberth WC, Pettersson ME, Getz G, Meadows JRS, Modiano JF, Breen M, Kierczak M, Forsberg-Nilsson K, Marinescu VD, Lindblad-Toh K.

Cancer Res. 2018 Jul 1;78(13):3421-3431. doi: 10.1158/0008-5472.CAN-17-3558. Epub 2018 May 3.

PMID:
29724721
2.

Predicting Post-Translational Modifications from Local Sequence Fragments Using Machine Learning Algorithms: Overview and Best Practices.

Tatjewski M, Kierczak M, Plewczynski D.

Methods Mol Biol. 2017;1484:275-300. doi: 10.1007/978-1-4939-6406-2_19.

PMID:
27787833
3.

Multiple regulatory variants located in cell type-specific enhancers within the PKP2 locus form major risk and protective haplotypes for canine atopic dermatitis in German shepherd dogs.

Tengvall K, Kozyrev S, Kierczak M, Bergvall K, Farias FH, Ardesjö-Lundgren B, Olsson M, Murén E, Hagman R, Leeb T, Pielberg G, Hedhammar Å, Andersson G, Lindblad-Toh K.

BMC Genet. 2016 Jun 29;17(1):97. doi: 10.1186/s12863-016-0404-3.

4.

Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease.

Olsson M, Kierczak M, Karlsson Å, Jabłońska J, Leegwater P, Koltookian M, Abadie J, De Citres CD, Thomas A, Hedhammar Å, Tintle L, Lindblad-Toh K, Meadows JR.

BMC Genomics. 2016 Apr 23;17:299. doi: 10.1186/s12864-016-2619-0.

5.

Effect of Breed on Plasma Endothelin-1 Concentration, Plasma Renin Activity, and Serum Cortisol Concentration in Healthy Dogs.

Höglund K, Lequarré AS, Ljungvall I, Mc Entee K, Merveille AC, Wiberg M, Gouni V, Lundgren Willesen J, Hanås S, Wess G, Mejer Sørensen L, Tiret L, Kierczak M, Forsberg SK, Seppälä E, Lindblad-Toh K, Lohi H, Chetboul V, Fredholm M, Häggström J.

J Vet Intern Med. 2016 Mar-Apr;30(2):566-73. doi: 10.1111/jvim.13829. Epub 2016 Jan 27.

6.

Correction: Genome-Wide Analysis in German Shepherd Dogs Reveals Association of a Locus on CFA 27 with Atopic Dermatitis.

Tengvall K, Kierczak M, Bergvall K, Olsson M, Frankowiack M, Farias FH, Pielberg G, Carlborg Ö, Leeb T, Andersson G, Hammarström L, Hedhammar Å, Lindblad-Toh K.

PLoS Genet. 2015 Dec 11;11(12):e1005740. doi: 10.1371/journal.pgen.1005740. eCollection 2015 Dec. No abstract available.

7.

Correction: Genome-Wide Analyses Suggest Mechanisms Involving Early B-Cell Development in Canine IgA Deficiency.

Olsson M, Tengvall K, Frankowiack M, Kierczak M, Bergvall K, Axelsson E, Tintle L, Marti E, Roosje P, Leeb T, Hedhammar Å, Hammarström L, Lindblad-Toh K.

PLoS One. 2015 Sep 14;10(9):e0138405. doi: 10.1371/journal.pone.0138405. eCollection 2015. No abstract available.

8.

A Multi-Breed Genome-Wide Association Analysis for Canine Hypothyroidism Identifies a Shared Major Risk Locus on CFA12.

Bianchi M, Dahlgren S, Massey J, Dietschi E, Kierczak M, Lund-Ziener M, Sundberg K, Thoresen SI, Kämpe O, Andersson G, Ollier WE, Hedhammar Å, Leeb T, Lindblad-Toh K, Kennedy LJ, Lingaas F, Rosengren Pielberg G.

PLoS One. 2015 Aug 11;10(8):e0134720. doi: 10.1371/journal.pone.0134720. eCollection 2015.

9.

cgmisc: enhanced genome-wide association analyses and visualization.

Kierczak M, Jabłońska J, Forsberg SK, Bianchi M, Tengvall K, Pettersson M, Scholz V, Meadows JR, Jern P, Carlborg Ö, Lindblad-Toh K.

Bioinformatics. 2015 Dec 1;31(23):3830-1. doi: 10.1093/bioinformatics/btv426. Epub 2015 Aug 6.

10.

Genome-Wide Analyses Suggest Mechanisms Involving Early B-Cell Development in Canine IgA Deficiency.

Olsson M, Tengvall K, Frankowiack M, Kierczak M, Bergvall K, Axelsson E, Tintle L, Marti E, Roosje P, Leeb T, Hedhammar Å, Hammarström L, Lindblad-Toh K.

PLoS One. 2015 Jul 30;10(7):e0133844. doi: 10.1371/journal.pone.0133844. eCollection 2015. Erratum in: PLoS One. 2015;10(9):e0138405.

11.

The Shepherds' Tale: A Genome-Wide Study across 9 Dog Breeds Implicates Two Loci in the Regulation of Fructosamine Serum Concentration in Belgian Shepherds.

Forsberg SK, Kierczak M, Ljungvall I, Merveille AC, Gouni V, Wiberg M, Lundgren Willesen J, Hanås S, Lequarré AS, Mejer Sørensen L, Tiret L, McEntee K, Seppälä E, Koch J, Battaille G, Lohi H, Fredholm M, Chetboul V, Häggström J, Carlborg Ö, Lindblad-Toh K, Höglund K.

PLoS One. 2015 May 13;10(5):e0123173. doi: 10.1371/journal.pone.0123173. eCollection 2015.

12.

Breed differences in natriuretic peptides in healthy dogs.

Sjöstrand K, Wess G, Ljungvall I, Häggström J, Merveille AC, Wiberg M, Gouni V, Lundgren Willesen J, Hanås S, Lequarré AS, Mejer Sørensen L, Wolf J, Tiret L, Kierczak M, Forsberg S, McEntee K, Battaille G, Seppälä E, Lindblad-Toh K, Georges M, Lohi H, Chetboul V, Fredholm M, Höglund K.

J Vet Intern Med. 2014 Mar-Apr;28(2):451-7. doi: 10.1111/jvim.12310. Epub 2014 Feb 3.

13.

Ensemble learning prediction of protein-protein interactions using proteins functional annotations.

Saha I, Zubek J, Klingström T, Forsberg S, Wikander J, Kierczak M, Maulik U, Plewczynski D.

Mol Biosyst. 2014 Apr;10(4):820-30. doi: 10.1039/c3mb70486f. Epub 2014 Jan 27.

PMID:
24469380
14.

Identification of candidate genes and mutations in QTL regions for chicken growth using bioinformatic analysis of NGS and SNP-chip data.

Ahsan M, Li X, Lundberg AE, Kierczak M, Siegel PB, Carlborg O, Marklund S.

Front Genet. 2013 Nov 5;4:226. doi: 10.3389/fgene.2013.00226. eCollection 2013.

15.

Thorough investigation of a canine autoinflammatory disease (AID) confirms one main risk locus and suggests a modifier locus for amyloidosis.

Olsson M, Tintle L, Kierczak M, Perloski M, Tonomura N, Lundquist A, Murén E, Fels M, Tengvall K, Pielberg G, Dufaure de Citres C, Dorso L, Abadie J, Hanson J, Thomas A, Leegwater P, Hedhammar Å, Lindblad-Toh K, Meadows JR.

PLoS One. 2013 Oct 9;8(10):e75242. doi: 10.1371/journal.pone.0075242. eCollection 2013.

16.

MAPfastR: quantitative trait loci mapping in outbred line crosses.

Nelson RM, Nettelblad C, Pettersson ME, Shen X, Crooks L, Besnier F, Alvarez-Castro JM, Rönnegård L, Ek W, Sheng Z, Kierczak M, Holmgren S, Carlborg O.

G3 (Bethesda). 2013 Dec 9;3(12):2147-9. doi: 10.1534/g3.113.008623.

17.

Higher order interactions: detection of epistasis using machine learning and evolutionary computation.

Nelson RM, Kierczak M, Carlborg O.

Methods Mol Biol. 2013;1019:499-518. doi: 10.1007/978-1-62703-447-0_24.

PMID:
23756908
18.

Genome-wide analysis in German shepherd dogs reveals association of a locus on CFA 27 with atopic dermatitis.

Tengvall K, Kierczak M, Bergvall K, Olsson M, Frankowiack M, Farias FH, Pielberg G, Carlborg Ö, Leeb T, Andersson G, Hammarström L, Hedhammar Å, Lindblad-Toh K.

PLoS Genet. 2013 May;9(5):e1003475. doi: 10.1371/journal.pgen.1003475. Epub 2013 May 9. Erratum in: PLoS Genet. 2015 Dec;11(12):e1005740. PLoS Genet. 2013 May;9(5). doi:10.1371/annotation/fd6f4425-3d84-4017-a012-a5df6ddee13a.

19.

PASE: a novel method for functional prediction of amino acid substitutions based on physicochemical properties.

Li X, Kierczak M, Shen X, Ahsan M, Carlborg O, Marklund S.

Front Genet. 2013 Mar 6;4:21. doi: 10.3389/fgene.2013.00021. eCollection 2013.

20.

Fine-grained adaptive divergence in an amphibian: genetic basis of phenotypic divergence and the role of nonrandom gene flow in restricting effective migration among wetlands.

Richter-Boix A, Quintela M, Kierczak M, Franch M, Laurila A.

Mol Ecol. 2013 Mar;22(5):1322-40. doi: 10.1111/mec.12181. Epub 2013 Jan 7. Erratum in: Mol Ecol. 2017 Jul;26(14 ):3851.

PMID:
23294180
21.

Two loci on chromosome 5 are associated with serum IgE levels in Labrador retrievers.

Owczarek-Lipska M, Lauber B, Molitor V, Meury S, Kierczak M, Tengvall K, Webster MT, Jagannathan V, Schlotter Y, Willemse T, Hendricks A, Bergvall K, Hedhammar A, Andersson G, Lindblad-Toh K, Favrot C, Roosje P, Marti E, Leeb T.

PLoS One. 2012;7(6):e39176. doi: 10.1371/journal.pone.0039176. Epub 2012 Jun 15.

22.

Computational Analysis of Molecular Interaction Networks Underlying Change of HIV-1 Resistance to Selected Reverse Transcriptase Inhibitors.

Kierczak M, Dramiński M, Koronacki J, Komorowski J.

Bioinform Biol Insights. 2010 Dec 12;4:137-46. doi: 10.4137/BBI.S6247.

23.

A Rough Set-Based Model of HIV-1 Reverse Transcriptase Resistome.

Kierczak M, Ginalski K, Dramiński M, Koronacki J, Rudnicki W, Komorowski J.

Bioinform Biol Insights. 2009 Oct 5;3:109-27.

24.

[Role of the adaptins, dynamin like GTP-ases and Rab proteins in metabolic disorders and various infections].

Kierczak M, Surmacz L, Wiejak J, Wyroba E.

Postepy Hig Med Dosw. 2003;57(6):727-37. Review. Polish.

PMID:
15002167

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