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Items: 1 to 50 of 426

1.

Population relationships based on 170 ancestry SNPs from the combined Kidd and Seldin panels.

Pakstis AJ, Speed WC, Soundararajan U, Rajeevan H, Kidd JR, Li H, Kidd KK.

Sci Rep. 2019 Dec 11;9(1):18874. doi: 10.1038/s41598-019-55175-x.

2.

MAPlex - A massively parallel sequencing ancestry analysis multiplex for Asia-Pacific populations.

Phillips C, McNevin D, Kidd KK, Lagacé R, Wootton S, de la Puente M, Freire-Aradas A, Mosquera-Miguel A, Eduardoff M, Gross T, Dagostino L, Power D, Olson S, Hashiyada M, Oz C, Parson W, Schneider PM, Lareu MV, Daniel R.

Forensic Sci Int Genet. 2019 Sep;42:213-226. doi: 10.1016/j.fsigen.2019.06.022. Epub 2019 Jun 28.

3.

Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs.

Pakstis AJ, Gurkan C, Dogan M, Balkaya HE, Dogan S, Neophytou PI, Cherni L, Boussetta S, Khodjet-El-Khil H, Ben Ammar ElGaaied A, Salvo NM, Janssen K, Olsen GH, Hadi S, Almohammed EK, Pereira V, Truelsen DM, Bulbul O, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK.

Eur J Hum Genet. 2019 Dec;27(12):1885-1893. doi: 10.1038/s41431-019-0466-6. Epub 2019 Jul 8.

4.

Genetic history of the population of Crete.

Drineas P, Tsetsos F, Plantinga A, Lazaridis I, Yannaki E, Razou A, Kanaki K, Michalodimitrakis M, Perez-Jimenez F, De Silvestro G, Renda MC, Stamatoyannopoulos JA, Kidd KK, Browning BL, Paschou P, Stamatoyannopoulos G.

Ann Hum Genet. 2019 Nov;83(6):373-388. doi: 10.1111/ahg.12328. Epub 2019 Jun 13.

5.

Correction to: Mixture deconvolution by massively parallel sequencing of microhaplotypes.

Bennett L, Oldoni F, Long K, Cisana S, Maddela K, Wootton S, Chang J, Hasegawa R, Lagacé R, Kidd KK, Podini D.

Int J Legal Med. 2019 May;133(3):731. doi: 10.1007/s00414-019-02031-2.

PMID:
30834970
6.

Usefulness of COMT gene polymorphisms in North African populations.

Boussetta S, Cherni L, Pakstis AJ, Ben Salem N, Elkamel S, Khodjet-El-Khil H, Kidd KK, Elgaaied ABA.

Gene. 2019 May 15;696:186-196. doi: 10.1016/j.gene.2019.02.021. Epub 2019 Feb 18.

PMID:
30790653
7.

Mixture deconvolution by massively parallel sequencing of microhaplotypes.

Bennett L, Oldoni F, Long K, Cisana S, Maddela K, Madella K, Wootton S, Chang J, Hasegawa R, Lagacé R, Kidd KK, Podini D.

Int J Legal Med. 2019 May;133(3):719-729. doi: 10.1007/s00414-019-02010-7. Epub 2019 Feb 13. Erratum in: Int J Legal Med. 2019 Mar 5;:. Madella K [corrected to Maddela K].

PMID:
30758713
8.

Microhaplotypes in forensic genetics.

Oldoni F, Kidd KK, Podini D.

Forensic Sci Int Genet. 2019 Jan;38:54-69. doi: 10.1016/j.fsigen.2018.09.009. Epub 2018 Oct 1. Review.

PMID:
30347322
9.

Recent Selection on a Class I ADH Locus Distinguishes Southwest Asian Populations Including Ashkenazi Jews.

Gu S, Li H, Pakstis AJ, Speed WC, Gurwitz D, Kidd JR, Kidd KK.

Genes (Basel). 2018 Sep 7;9(9). pii: E452. doi: 10.3390/genes9090452.

10.

Selecting microhaplotypes optimized for different purposes.

Kidd KK, Pakstis AJ, Speed WC, Lagace R, Wootton S, Chang J.

Electrophoresis. 2018 Nov;39(21):2815-2823. doi: 10.1002/elps.201800092. Epub 2018 Jul 10.

PMID:
29931757
11.

Improving ancestry distinctions among Southwest Asian populations.

Bulbul O, Speed WC, Gurkan C, Soundararajan U, Rajeevan H, Pakstis AJ, Kidd KK.

Forensic Sci Int Genet. 2018 Jul;35:14-20. doi: 10.1016/j.fsigen.2018.03.010. Epub 2018 Mar 23.

PMID:
29625264
12.

Ancestry inference of 96 population samples using microhaplotypes.

Bulbul O, Pakstis AJ, Soundararajan U, Gurkan C, Brissenden JE, Roscoe JM, Evsanaa B, Togtokh A, Paschou P, Grigorenko EL, Gurwitz D, Wootton S, Lagace R, Chang J, Speed WC, Kidd KK.

Int J Legal Med. 2018 May;132(3):703-711. doi: 10.1007/s00414-017-1748-6. Epub 2017 Dec 16.

13.

The redesigned Forensic Research/Reference on Genetics-knowledge base, FROG-kb.

Kidd KK, Soundararajan U, Rajeevan H, Pakstis AJ, Moore KN, Ropero-Miller JD.

Forensic Sci Int Genet. 2018 Mar;33:33-37. doi: 10.1016/j.fsigen.2017.11.009. Epub 2017 Nov 14.

14.

Evaluating 130 microhaplotypes across a global set of 83 populations.

Kidd KK, Speed WC, Pakstis AJ, Podini DS, Lagacé R, Chang J, Wootton S, Haigh E, Soundararajan U.

Forensic Sci Int Genet. 2017 Jul;29:29-37. doi: 10.1016/j.fsigen.2017.03.014. Epub 2017 Mar 16.

15.

Genetics of the peloponnesean populations and the theory of extinction of the medieval peloponnesean Greeks.

Stamatoyannopoulos G, Bose A, Teodosiadis A, Tsetsos F, Plantinga A, Psatha N, Zogas N, Yannaki E, Zalloua P, Kidd KK, Browning BL, Stamatoyannopoulos J, Paschou P, Drineas P.

Eur J Hum Genet. 2017 May;25(5):637-645. doi: 10.1038/ejhg.2017.18. Epub 2017 Mar 8.

16.

Confounding effects of microbiome on the susceptibility of TNFSF15 to Crohn's disease in the Ryukyu Islands.

Nakagome S, Chinen H, Iraha A, Hokama A, Takeyama Y, Sakisaka S, Matsui T, Kidd JR, Kidd KK, Said HS, Suda W, Morita H, Hattori M, Hanihara T, Kimura R, Ishida H, Fujita J, Kinjo F, Mano S, Oota H.

Hum Genet. 2017 Apr;136(4):387-397. doi: 10.1007/s00439-017-1764-0. Epub 2017 Feb 14.

PMID:
28197769
17.

Increasing the reference populations for the 55 AISNP panel: the need and benefits.

Pakstis AJ, Kang L, Liu L, Zhang Z, Jin T, Grigorenko EL, Wendt FR, Budowle B, Hadi S, Al Qahtani MS, Morling N, Mogensen HS, Themudo GE, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK.

Int J Legal Med. 2017 Jul;131(4):913-917. doi: 10.1007/s00414-016-1524-z. Epub 2017 Jan 9.

18.

Proposed nomenclature for microhaplotypes.

Kidd KK.

Hum Genomics. 2016 Jun 17;10(1):16. doi: 10.1186/s40246-016-0078-y.

19.

Genetic variation in Tunisia in the context of human diversity worldwide.

Cherni L, Pakstis AJ, Boussetta S, Elkamel S, Frigi S, Khodjet-El-Khil H, Barton A, Haigh E, Speed WC, Ben Ammar Elgaaied A, Kidd JR, Kidd KK.

Am J Phys Anthropol. 2016 Sep;161(1):62-71. doi: 10.1002/ajpa.23008. Epub 2016 May 18.

20.

Evaluating a subset of ancestry informative SNPs for discriminating among Southwest Asian and circum-Mediterranean populations.

Bulbul O, Cherni L, Khodjet-El-Khil H, Rajeevan H, Kidd KK.

Forensic Sci Int Genet. 2016 Jul;23:153-158. doi: 10.1016/j.fsigen.2016.04.010. Epub 2016 Apr 27.

21.

A panel of 74 AISNPs: Improved ancestry inference within Eastern Asia.

Li CX, Pakstis AJ, Jiang L, Wei YL, Sun QF, Wu H, Bulbul O, Wang P, Kang LL, Kidd JR, Kidd KK.

Forensic Sci Int Genet. 2016 Jul;23:101-110. doi: 10.1016/j.fsigen.2016.04.002. Epub 2016 Apr 4.

PMID:
27077960
22.

Minimal SNP overlap among multiple panels of ancestry informative markers argues for more international collaboration.

Soundararajan U, Yun L, Shi M, Kidd KK.

Forensic Sci Int Genet. 2016 Jul;23:25-32. doi: 10.1016/j.fsigen.2016.01.013. Epub 2016 Jan 22.

23.

Vibratory Urticaria Associated with a Missense Variant in ADGRE2.

Boyden SE, Desai A, Cruse G, Young ML, Bolan HC, Scott LM, Eisch AR, Long RD, Lee CC, Satorius CL, Pakstis AJ, Olivera A, Mullikin JC, Chouery E, Mégarbané A, Medlej-Hashim M, Kidd KK, Kastner DL, Metcalfe DD, Komarow HD.

N Engl J Med. 2016 Feb 18;374(7):656-63. doi: 10.1056/NEJMoa1500611. Epub 2016 Feb 3.

24.

Mongolians in the Genetic Landscape of Central Asia: Exploring the Genetic Relations among Mongolians and Other World Populations.

Brissenden JE, Kidd JR, Evsanaa B, Togtokh AJ, Pakstis AJ, Friedlaender F, Kidd KK, Roscoe JM.

Hum Biol. 2015 Apr;87(2):73-91. doi: 10.13110/humanbiology.87.2.0005.

PMID:
26829292
25.

52 additional reference population samples for the 55 AISNP panel.

Pakstis AJ, Haigh E, Cherni L, ElGaaied ABA, Barton A, Evsanaa B, Togtokh A, Brissenden J, Roscoe J, Bulbul O, Filoglu G, Gurkan C, Meiklejohn KA, Robertson JM, Li CX, Wei YL, Li H, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK.

Forensic Sci Int Genet. 2015 Nov;19:269-271. doi: 10.1016/j.fsigen.2015.08.003. Epub 2015 Aug 14.

26.

Criteria for selecting microhaplotypes: mixture detection and deconvolution.

Kidd KK, Speed WC.

Investig Genet. 2015 Jan 28;6:1. doi: 10.1186/s13323-014-0018-3. eCollection 2015.

27.

Inferring population structure and demographic history using Y-STR data from worldwide populations.

Xu H, Wang CC, Shrestha R, Wang LX, Zhang M, He Y, Kidd JR, Kidd KK, Jin L, Li H.

Mol Genet Genomics. 2015 Feb;290(1):141-50. doi: 10.1007/s00438-014-0903-8. Epub 2014 Aug 27.

PMID:
25159112
28.

Current sequencing technology makes microhaplotypes a powerful new type of genetic marker for forensics.

Kidd KK, Pakstis AJ, Speed WC, Lagacé R, Chang J, Wootton S, Haigh E, Kidd JR.

Forensic Sci Int Genet. 2014 Sep;12:215-24. doi: 10.1016/j.fsigen.2014.06.014. Epub 2014 Jul 1.

29.

Maritime route of colonization of Europe.

Paschou P, Drineas P, Yannaki E, Razou A, Kanaki K, Tsetsos F, Padmanabhuni SS, Michalodimitrakis M, Renda MC, Pavlovic S, Anagnostopoulos A, Stamatoyannopoulos JA, Kidd KK, Stamatoyannopoulos G.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9211-6. doi: 10.1073/pnas.1320811111. Epub 2014 Jun 9.

30.

A form of the metabolic syndrome associated with mutations in DYRK1B.

Keramati AR, Fathzadeh M, Go GW, Singh R, Choi M, Faramarzi S, Mane S, Kasaei M, Sarajzadeh-Fard K, Hwa J, Kidd KK, Babaee Bigi MA, Malekzadeh R, Hosseinian A, Babaei M, Lifton RP, Mani A.

N Engl J Med. 2014 May 15;370(20):1909-1919. doi: 10.1056/NEJMoa1301824.

31.

Extensive sequence variation in the 3' untranslated region of the KRAS gene in lung and ovarian cancer cases.

Kim M, Chen X, Chin LJ, Paranjape T, Speed WC, Kidd KK, Zhao H, Weidhaas JB, Slack FJ.

Cell Cycle. 2014;13(6):1030-40. doi: 10.4161/cc.27941. Epub 2014 Feb 3.

32.

Progress toward an efficient panel of SNPs for ancestry inference.

Kidd KK, Speed WC, Pakstis AJ, Furtado MR, Fang R, Madbouly A, Maiers M, Middha M, Friedlaender FR, Kidd JR.

Forensic Sci Int Genet. 2014 May;10:23-32. doi: 10.1016/j.fsigen.2014.01.002. Epub 2014 Jan 15.

33.

Application of six IrisPlex SNPs and comparison of two eye color prediction systems in diverse Eurasia populations.

Yun L, Gu Y, Rajeevan H, Kidd KK.

Int J Legal Med. 2014 May;128(3):447-53. doi: 10.1007/s00414-013-0953-1. Epub 2014 Jan 7.

PMID:
24395150
34.

An historical perspective on "The world-wide distribution of allele frequencies at the human dopamine D4 receptor locus".

Kidd KK, Pakstis AJ, Yun L.

Hum Genet. 2014 Apr;133(4):431-3. doi: 10.1007/s00439-013-1386-0. Epub 2013 Oct 27. Review.

PMID:
24162668
35.

Haplotype structure and positive selection at TLR1.

Heffelfinger C, Pakstis AJ, Speed WC, Clark AP, Haigh E, Fang R, Furtado MR, Kidd KK, Snyder MP.

Eur J Hum Genet. 2014 Apr;22(4):551-7. doi: 10.1038/ejhg.2013.194. Epub 2013 Sep 4.

36.

Inference of human continental origin and admixture proportions using a highly discriminative ancestry informative 41-SNP panel.

Nievergelt CM, Maihofer AX, Shekhtman T, Libiger O, Wang X, Kidd KK, Kidd JR.

Investig Genet. 2013 Jul 1;4(1):13. doi: 10.1186/2041-2223-4-13.

37.

Worldwide population variation and haplotype analysis at the serotonin transporter gene SLC6A4 and implications for association studies.

Murdoch JD, Speed WC, Pakstis AJ, Heffelfinger CE, Kidd KK.

Biol Psychiatry. 2013 Dec 15;74(12):879-89. doi: 10.1016/j.biopsych.2013.02.006. Epub 2013 Mar 16.

PMID:
23510579
38.

High diversity and no significant selection signal of human ADH1B gene in Tibet.

Lu Y, Kang L, Hu K, Wang C, Sun X, Chen F, Kidd JR, Kidd KK, Li H.

Investig Genet. 2012 Nov 23;3(1):23. doi: 10.1186/2041-2223-3-23.

39.

Exploring genomic structure differences and similarities between the Greek and European HapMap populations: implications for association studies.

Stathias V, Sotiris GR, Karagiannidis I, Bourikas G, Martinis G, Papazoglou D, Tavridou A, Papanas N, Maltezos E, Theodoridis M, Vargemezis V, Manolopoulos VG, Speed WC, Kidd JR, Kidd KK, Drineas P, Paschou P.

Ann Hum Genet. 2012 Nov;76(6):472-83. doi: 10.1111/j.1469-1809.2012.00730.x.

40.

Introducing the Forensic Research/Reference on Genetics knowledge base, FROG-kb.

Rajeevan H, Soundararajan U, Pakstis AJ, Kidd KK.

Investig Genet. 2012 Sep 1;3(1):18. doi: 10.1186/2041-2223-3-18.

41.

Genome-wide association study of Tourette's syndrome.

Scharf JM, Yu D, Mathews CA, Neale BM, Stewart SE, Fagerness JA, Evans P, Gamazon E, Edlund CK, Service SK, Tikhomirov A, Osiecki L, Illmann C, Pluzhnikov A, Konkashbaev A, Davis LK, Han B, Crane J, Moorjani P, Crenshaw AT, Parkin MA, Reus VI, Lowe TL, Rangel-Lugo M, Chouinard S, Dion Y, Girard S, Cath DC, Smit JH, King RA, Fernandez TV, Leckman JF, Kidd KK, Kidd JR, Pakstis AJ, State MW, Herrera LD, Romero R, Fournier E, Sandor P, Barr CL, Phan N, Gross-Tsur V, Benarroch F, Pollak Y, Budman CL, Bruun RD, Erenberg G, Naarden AL, Lee PC, Weiss N, Kremeyer B, Berrío GB, Campbell DD, Cardona Silgado JC, Ochoa WC, Mesa Restrepo SC, Muller H, Valencia Duarte AV, Lyon GJ, Leppert M, Morgan J, Weiss R, Grados MA, Anderson K, Davarya S, Singer H, Walkup J, Jankovic J, Tischfield JA, Heiman GA, Gilbert DL, Hoekstra PJ, Robertson MM, Kurlan R, Liu C, Gibbs JR, Singleton A; North American Brain Expression Consortium, Hardy J; UK Human Brain Expression Database, Strengman E, Ophoff RA, Wagner M, Moessner R, Mirel DB, Posthuma D, Sabatti C, Eskin E, Conti DV, Knowles JA, Ruiz-Linares A, Rouleau GA, Purcell S, Heutink P, Oostra BA, McMahon WM, Freimer NB, Cox NJ, Pauls DL.

Mol Psychiatry. 2013 Jun;18(6):721-8. doi: 10.1038/mp.2012.69. Epub 2012 Aug 14.

42.

Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.

Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R.

Nat Genet. 2012 Sep;44(9):1006-14. doi: 10.1038/ng.2359. Epub 2012 Jul 29.

43.

Structural diversity and African origin of the 17q21.31 inversion polymorphism.

Steinberg KM, Antonacci F, Sudmant PH, Kidd JM, Campbell CD, Vives L, Malig M, Scheinfeldt L, Beggs W, Ibrahim M, Lema G, Nyambo TB, Omar SA, Bodo JM, Froment A, Donnelly MP, Kidd KK, Tishkoff SA, Eichler EE.

Nat Genet. 2012 Jul 1;44(8):872-80. doi: 10.1038/ng.2335.

44.

Mini-haplotypes as lineage informative SNPs and ancestry inference SNPs.

Pakstis AJ, Fang R, Furtado MR, Kidd JR, Kidd KK.

Eur J Hum Genet. 2012 Nov;20(11):1148-54. doi: 10.1038/ejhg.2012.69. Epub 2012 Apr 25.

45.

Expanding data and resources for forensic use of SNPs in individual identification.

Kidd KK, Kidd JR, Speed WC, Fang R, Furtado MR, Hyland FC, Pakstis AJ.

Forensic Sci Int Genet. 2012 Sep;6(5):646-52. doi: 10.1016/j.fsigen.2012.02.012. Epub 2012 Mar 22.

PMID:
22445421
46.

Crohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variation.

Nakagome S, Mano S, Kozlowski L, Bujnicki JM, Shibata H, Fukumaki Y, Kidd JR, Kidd KK, Kawamura S, Oota H.

Mol Biol Evol. 2012 Jun;29(6):1569-85. doi: 10.1093/molbev/mss006. Epub 2012 Jan 12.

47.

A global view of the OCA2-HERC2 region and pigmentation.

Donnelly MP, Paschou P, Grigorenko E, Gurwitz D, Barta C, Lu RB, Zhukova OV, Kim JJ, Siniscalco M, New M, Li H, Kajuna SL, Manolopoulos VG, Speed WC, Pakstis AJ, Kidd JR, Kidd KK.

Hum Genet. 2012 May;131(5):683-96. doi: 10.1007/s00439-011-1110-x. Epub 2011 Nov 8.

48.

ALFRED: an allele frequency resource for research and teaching.

Rajeevan H, Soundararajan U, Kidd JR, Pakstis AJ, Kidd KK.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1010-5. doi: 10.1093/nar/gkr924. Epub 2011 Oct 28.

49.

Single nucleotide polymorphisms and haplotypes in Native American populations.

Kidd JR, Friedlaender F, Pakstis AJ, Furtado M, Fang R, Wang X, Nievergelt CM, Kidd KK.

Am J Phys Anthropol. 2011 Dec;146(4):495-502. doi: 10.1002/ajpa.21560. Epub 2011 Sep 13.

50.

Selection on the human bitter taste gene, TAS2R16, in Eurasian populations.

Li H, Pakstis AJ, Kidd JR, Kidd KK.

Hum Biol. 2011 Jun;83(3):363-77. doi: 10.3378/027.083.0303.

PMID:
21740153

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