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Items: 1 to 50 of 158

1.

Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs.

Pakstis AJ, Gurkan C, Dogan M, Balkaya HE, Dogan S, Neophytou PI, Cherni L, Boussetta S, Khodjet-El-Khil H, Ben Ammar ElGaaied A, Salvo NM, Janssen K, Olsen GH, Hadi S, Almohammed EK, Pereira V, Truelsen DM, Bulbul O, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK.

Eur J Hum Genet. 2019 Jul 8. doi: 10.1038/s41431-019-0466-6. [Epub ahead of print]

PMID:
31285530
2.

Recent Selection on a Class I ADH Locus Distinguishes Southwest Asian Populations Including Ashkenazi Jews.

Gu S, Li H, Pakstis AJ, Speed WC, Gurwitz D, Kidd JR, Kidd KK.

Genes (Basel). 2018 Sep 7;9(9). pii: E452. doi: 10.3390/genes9090452.

3.

Confounding effects of microbiome on the susceptibility of TNFSF15 to Crohn's disease in the Ryukyu Islands.

Nakagome S, Chinen H, Iraha A, Hokama A, Takeyama Y, Sakisaka S, Matsui T, Kidd JR, Kidd KK, Said HS, Suda W, Morita H, Hattori M, Hanihara T, Kimura R, Ishida H, Fujita J, Kinjo F, Mano S, Oota H.

Hum Genet. 2017 Apr;136(4):387-397. doi: 10.1007/s00439-017-1764-0. Epub 2017 Feb 14.

PMID:
28197769
4.

Increasing the reference populations for the 55 AISNP panel: the need and benefits.

Pakstis AJ, Kang L, Liu L, Zhang Z, Jin T, Grigorenko EL, Wendt FR, Budowle B, Hadi S, Al Qahtani MS, Morling N, Mogensen HS, Themudo GE, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK.

Int J Legal Med. 2017 Jul;131(4):913-917. doi: 10.1007/s00414-016-1524-z. Epub 2017 Jan 9.

5.

Genetic and neural predictors of behavioral weight loss treatment: A preliminary study.

Chen EY, Olino TM, Conklin CJ, Mohamed FB, Hoge WS, Foster GD; Genetic and Neural Biomarkers of Obesity (GN-BO) study group:, Arlt JM, Eneva K, Kidd JR, Kidd KR, Lent MR, Murray S, Newberg A, Tewksbury C, VanderVeur SS, Yiu A.

Obesity (Silver Spring). 2017 Jan;25(1):66-75. doi: 10.1002/oby.21691. Epub 2016 Nov 2.

6.

Genetic variation in Tunisia in the context of human diversity worldwide.

Cherni L, Pakstis AJ, Boussetta S, Elkamel S, Frigi S, Khodjet-El-Khil H, Barton A, Haigh E, Speed WC, Ben Ammar Elgaaied A, Kidd JR, Kidd KK.

Am J Phys Anthropol. 2016 Sep;161(1):62-71. doi: 10.1002/ajpa.23008. Epub 2016 May 18.

7.

A panel of 74 AISNPs: Improved ancestry inference within Eastern Asia.

Li CX, Pakstis AJ, Jiang L, Wei YL, Sun QF, Wu H, Bulbul O, Wang P, Kang LL, Kidd JR, Kidd KK.

Forensic Sci Int Genet. 2016 Jul;23:101-110. doi: 10.1016/j.fsigen.2016.04.002. Epub 2016 Apr 4.

PMID:
27077960
8.

Mongolians in the Genetic Landscape of Central Asia: Exploring the Genetic Relations among Mongolians and Other World Populations.

Brissenden JE, Kidd JR, Evsanaa B, Togtokh AJ, Pakstis AJ, Friedlaender F, Kidd KK, Roscoe JM.

Hum Biol. 2015 Apr;87(2):73-91. doi: 10.13110/humanbiology.87.2.0005.

PMID:
26829292
9.

52 additional reference population samples for the 55 AISNP panel.

Pakstis AJ, Haigh E, Cherni L, ElGaaied ABA, Barton A, Evsanaa B, Togtokh A, Brissenden J, Roscoe J, Bulbul O, Filoglu G, Gurkan C, Meiklejohn KA, Robertson JM, Li CX, Wei YL, Li H, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK.

Forensic Sci Int Genet. 2015 Nov;19:269-271. doi: 10.1016/j.fsigen.2015.08.003. Epub 2015 Aug 14.

10.

Inferring population structure and demographic history using Y-STR data from worldwide populations.

Xu H, Wang CC, Shrestha R, Wang LX, Zhang M, He Y, Kidd JR, Kidd KK, Jin L, Li H.

Mol Genet Genomics. 2015 Feb;290(1):141-50. doi: 10.1007/s00438-014-0903-8. Epub 2014 Aug 27.

PMID:
25159112
11.

Current sequencing technology makes microhaplotypes a powerful new type of genetic marker for forensics.

Kidd KK, Pakstis AJ, Speed WC, Lagacé R, Chang J, Wootton S, Haigh E, Kidd JR.

Forensic Sci Int Genet. 2014 Sep;12:215-24. doi: 10.1016/j.fsigen.2014.06.014. Epub 2014 Jul 1.

12.

Progress toward an efficient panel of SNPs for ancestry inference.

Kidd KK, Speed WC, Pakstis AJ, Furtado MR, Fang R, Madbouly A, Maiers M, Middha M, Friedlaender FR, Kidd JR.

Forensic Sci Int Genet. 2014 May;10:23-32. doi: 10.1016/j.fsigen.2014.01.002. Epub 2014 Jan 15.

13.

Inference of human continental origin and admixture proportions using a highly discriminative ancestry informative 41-SNP panel.

Nievergelt CM, Maihofer AX, Shekhtman T, Libiger O, Wang X, Kidd KK, Kidd JR.

Investig Genet. 2013 Jul 1;4(1):13. doi: 10.1186/2041-2223-4-13.

14.

High diversity and no significant selection signal of human ADH1B gene in Tibet.

Lu Y, Kang L, Hu K, Wang C, Sun X, Chen F, Kidd JR, Kidd KK, Li H.

Investig Genet. 2012 Nov 23;3(1):23. doi: 10.1186/2041-2223-3-23.

15.

Exploring genomic structure differences and similarities between the Greek and European HapMap populations: implications for association studies.

Stathias V, Sotiris GR, Karagiannidis I, Bourikas G, Martinis G, Papazoglou D, Tavridou A, Papanas N, Maltezos E, Theodoridis M, Vargemezis V, Manolopoulos VG, Speed WC, Kidd JR, Kidd KK, Drineas P, Paschou P.

Ann Hum Genet. 2012 Nov;76(6):472-83. doi: 10.1111/j.1469-1809.2012.00730.x.

16.

Genome-wide association study of Tourette's syndrome.

Scharf JM, Yu D, Mathews CA, Neale BM, Stewart SE, Fagerness JA, Evans P, Gamazon E, Edlund CK, Service SK, Tikhomirov A, Osiecki L, Illmann C, Pluzhnikov A, Konkashbaev A, Davis LK, Han B, Crane J, Moorjani P, Crenshaw AT, Parkin MA, Reus VI, Lowe TL, Rangel-Lugo M, Chouinard S, Dion Y, Girard S, Cath DC, Smit JH, King RA, Fernandez TV, Leckman JF, Kidd KK, Kidd JR, Pakstis AJ, State MW, Herrera LD, Romero R, Fournier E, Sandor P, Barr CL, Phan N, Gross-Tsur V, Benarroch F, Pollak Y, Budman CL, Bruun RD, Erenberg G, Naarden AL, Lee PC, Weiss N, Kremeyer B, Berrío GB, Campbell DD, Cardona Silgado JC, Ochoa WC, Mesa Restrepo SC, Muller H, Valencia Duarte AV, Lyon GJ, Leppert M, Morgan J, Weiss R, Grados MA, Anderson K, Davarya S, Singer H, Walkup J, Jankovic J, Tischfield JA, Heiman GA, Gilbert DL, Hoekstra PJ, Robertson MM, Kurlan R, Liu C, Gibbs JR, Singleton A; North American Brain Expression Consortium, Hardy J; UK Human Brain Expression Database, Strengman E, Ophoff RA, Wagner M, Moessner R, Mirel DB, Posthuma D, Sabatti C, Eskin E, Conti DV, Knowles JA, Ruiz-Linares A, Rouleau GA, Purcell S, Heutink P, Oostra BA, McMahon WM, Freimer NB, Cox NJ, Pauls DL.

Mol Psychiatry. 2013 Jun;18(6):721-8. doi: 10.1038/mp.2012.69. Epub 2012 Aug 14.

17.

Basal, circadian, and acute inflammation in normal versus overweight men.

Miles MP, Keller JM, Kordick LK, Kidd JR.

Med Sci Sports Exerc. 2012 Dec;44(12):2290-8. doi: 10.1249/MSS.0b013e318267b209.

PMID:
22776879
18.

Alternative medicines for the geriatric veterinary patient.

Kidd JR.

Vet Clin North Am Small Anim Pract. 2012 Jul;42(4):809-22, viii. doi: 10.1016/j.cvsm.2012.04.009. Review.

PMID:
22720815
19.

Mini-haplotypes as lineage informative SNPs and ancestry inference SNPs.

Pakstis AJ, Fang R, Furtado MR, Kidd JR, Kidd KK.

Eur J Hum Genet. 2012 Nov;20(11):1148-54. doi: 10.1038/ejhg.2012.69. Epub 2012 Apr 25.

20.

Expanding data and resources for forensic use of SNPs in individual identification.

Kidd KK, Kidd JR, Speed WC, Fang R, Furtado MR, Hyland FC, Pakstis AJ.

Forensic Sci Int Genet. 2012 Sep;6(5):646-52. doi: 10.1016/j.fsigen.2012.02.012. Epub 2012 Mar 22.

PMID:
22445421
21.

Crohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variation.

Nakagome S, Mano S, Kozlowski L, Bujnicki JM, Shibata H, Fukumaki Y, Kidd JR, Kidd KK, Kawamura S, Oota H.

Mol Biol Evol. 2012 Jun;29(6):1569-85. doi: 10.1093/molbev/mss006. Epub 2012 Jan 12.

22.

A global view of the OCA2-HERC2 region and pigmentation.

Donnelly MP, Paschou P, Grigorenko E, Gurwitz D, Barta C, Lu RB, Zhukova OV, Kim JJ, Siniscalco M, New M, Li H, Kajuna SL, Manolopoulos VG, Speed WC, Pakstis AJ, Kidd JR, Kidd KK.

Hum Genet. 2012 May;131(5):683-96. doi: 10.1007/s00439-011-1110-x. Epub 2011 Nov 8.

23.

ALFRED: an allele frequency resource for research and teaching.

Rajeevan H, Soundararajan U, Kidd JR, Pakstis AJ, Kidd KK.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1010-5. doi: 10.1093/nar/gkr924. Epub 2011 Oct 28.

24.

Single nucleotide polymorphisms and haplotypes in Native American populations.

Kidd JR, Friedlaender F, Pakstis AJ, Furtado M, Fang R, Wang X, Nievergelt CM, Kidd KK.

Am J Phys Anthropol. 2011 Dec;146(4):495-502. doi: 10.1002/ajpa.21560. Epub 2011 Sep 13.

25.

Selection on the human bitter taste gene, TAS2R16, in Eurasian populations.

Li H, Pakstis AJ, Kidd JR, Kidd KK.

Hum Biol. 2011 Jun;83(3):363-77. doi: 10.3378/027.083.0303.

PMID:
21740153
26.

Selecting SNPs to identify ancestry.

Sampson JN, Kidd KK, Kidd JR, Zhao H.

Ann Hum Genet. 2011 Jul;75(4):539-53. doi: 10.1111/j.1469-1809.2011.00656.x.

27.

Diversification of the ADH1B gene during expansion of modern humans.

Li H, Gu S, Han Y, Xu Z, Pakstis AJ, Jin L, Kidd JR, Kidd KK.

Ann Hum Genet. 2011 Jul;75(4):497-507. doi: 10.1111/j.1469-1809.2011.00651.x. Epub 2011 May 18.

28.

An application of the elastic net for an endophenotype analysis.

Palejev D, Hwang W, Landi N, Eastman M, Frost SJ, Fulbright RK, Kidd JR, Kidd KK, Mason GF, Mencl WE, Yrigollen C, Pugh KR, Grigorenko EL.

Behav Genet. 2011 Jan;41(1):120-4. doi: 10.1007/s10519-011-9443-8. Epub 2011 Jan 13.

29.

Analyses of a set of 128 ancestry informative single-nucleotide polymorphisms in a global set of 119 population samples.

Kidd JR, Friedlaender FR, Speed WC, Pakstis AJ, De La Vega FM, Kidd KK.

Investig Genet. 2011 Jan 5;2(1):1. doi: 10.1186/2041-2223-2-1.

30.

Vegetable Intake in College-Aged Adults Is Explained by Oral Sensory Phenotypes and TAS2R38 Genotype.

Duffy VB, Hayes JE, Davidson AC, Kidd JR, Kidd KK, Bartoshuk LM.

Chemosens Percept. 2010 Dec 1;3(3-4):137-148.

31.

The distribution and most recent common ancestor of the 17q21 inversion in humans.

Donnelly MP, Paschou P, Grigorenko E, Gurwitz D, Mehdi SQ, Kajuna SL, Barta C, Kungulilo S, Karoma NJ, Lu RB, Zhukova OV, Kim JJ, Comas D, Siniscalco M, New M, Li P, Li H, Manolopoulos VG, Speed WC, Rajeevan H, Pakstis AJ, Kidd JR, Kidd KK.

Am J Hum Genet. 2010 Feb 12;86(2):161-71. doi: 10.1016/j.ajhg.2010.01.007. Epub 2010 Jan 28.

32.

Genetic landscape of Eurasia and "admixture" in Uyghurs.

Li H, Cho K, Kidd JR, Kidd KK.

Am J Hum Genet. 2009 Dec;85(6):934-7; author reply 937-9. doi: 10.1016/j.ajhg.2009.10.024. No abstract available.

33.

SNPs for a universal individual identification panel.

Pakstis AJ, Speed WC, Fang R, Hyland FC, Furtado MR, Kidd JR, Kidd KK.

Hum Genet. 2010 Mar;127(3):315-24. doi: 10.1007/s00439-009-0771-1.

PMID:
19937056
34.

Evolutionary dynamics of human Toll-like receptors and their different contributions to host defense.

Barreiro LB, Ben-Ali M, Quach H, Laval G, Patin E, Pickrell JK, Bouchier C, Tichit M, Neyrolles O, Gicquel B, Kidd JR, Kidd KK, Alcaïs A, Ragimbeau J, Pellegrini S, Abel L, Casanova JL, Quintana-Murci L.

PLoS Genet. 2009 Jul;5(7):e1000562. doi: 10.1371/journal.pgen.1000562. Epub 2009 Jul 17.

35.

Refined geographic distribution of the oriental ALDH2*504Lys (nee 487Lys) variant.

Li H, Borinskaya S, Yoshimura K, Kal'ina N, Marusin A, Stepanov VA, Qin Z, Khaliq S, Lee MY, Yang Y, Mohyuddin A, Gurwitz D, Mehdi SQ, Rogaev E, Jin L, Yankovsky NK, Kidd JR, Kidd KK.

Ann Hum Genet. 2009 May;73(Pt 3):335-45. doi: 10.1111/j.1469-1809.2009.00517.x.

36.

Inferring the demographic history of African farmers and pygmy hunter-gatherers using a multilocus resequencing data set.

Patin E, Laval G, Barreiro LB, Salas A, Semino O, Santachiara-Benerecetti S, Kidd KK, Kidd JR, Van der Veen L, Hombert JM, Gessain A, Froment A, Bahuchet S, Heyer E, Quintana-Murci L.

PLoS Genet. 2009 Apr;5(4):e1000448. doi: 10.1371/journal.pgen.1000448. Epub 2009 Apr 10.

37.

Signatures of purifying and local positive selection in human miRNAs.

Quach H, Barreiro LB, Laval G, Zidane N, Patin E, Kidd KK, Kidd JR, Bouchier C, Veuille M, Antoniewski C, Quintana-Murci L.

Am J Hum Genet. 2009 Mar;84(3):316-27. doi: 10.1016/j.ajhg.2009.01.022. Epub 2009 Feb 19.

38.

Population-specific variation in haplotype composition and heterozygosity at the POLB locus.

Yamtich J, Speed WC, Straka E, Kidd JR, Sweasy JB, Kidd KK.

DNA Repair (Amst). 2009 May 1;8(5):579-84. doi: 10.1016/j.dnarep.2008.12.005. Epub 2009 Jan 23.

39.

Global patterns of variation in allele and haplotype frequencies and linkage disequilibrium across the CYP2E1 gene.

Lee MY, Mukherjee N, Pakstis AJ, Khaliq S, Mohyuddin A, Mehdi SQ, Speed WC, Kidd JR, Kidd KK.

Pharmacogenomics J. 2008 Oct;8(5):349-56. doi: 10.1038/tpj.2008.9. Epub 2008 Jul 29.

40.

Genetic differences in human circadian clock genes among worldwide populations.

Ciarleglio CM, Ryckman KK, Servick SV, Hida A, Robbins S, Wells N, Hicks J, Larson SA, Wiedermann JP, Carver K, Hamilton N, Kidd KK, Kidd JR, Smith JR, Friedlaender J, McMahon DG, Williams SM, Summar ML, Johnson CH.

J Biol Rhythms. 2008 Aug;23(4):330-40. doi: 10.1177/0748730408320284.

41.

The complex global pattern of genetic variation and linkage disequilibrium at catechol-O-methyltransferase.

Mukherjee N, Kidd KK, Pakstis AJ, Speed WC, Li H, Tarnok Z, Barta C, Kajuna SL, Kidd JR.

Mol Psychiatry. 2010 Feb;15(2):216-25. doi: 10.1038/mp.2008.64. Epub 2008 Jun 24.

42.

Ethnic related selection for an ADH Class I variant within East Asia.

Li H, Gu S, Cai X, Speed WC, Pakstis AJ, Golub EI, Kidd JR, Kidd KK.

PLoS One. 2008 Apr 2;3(4):e1881. doi: 10.1371/journal.pone.0001881.

43.

Maternal traces of deep common ancestry and asymmetric gene flow between Pygmy hunter-gatherers and Bantu-speaking farmers.

Quintana-Murci L, Quach H, Harmant C, Luca F, Massonnet B, Patin E, Sica L, Mouguiama-Daouda P, Comas D, Tzur S, Balanovsky O, Kidd KK, Kidd JR, van der Veen L, Hombert JM, Gessain A, Verdu P, Froment A, Bahuchet S, Heyer E, Dausset J, Salas A, Behar DM.

Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1596-601. doi: 10.1073/pnas.0711467105. Epub 2008 Jan 23.

44.

Supertasting and PROP bitterness depends on more than the TAS2R38 gene.

Hayes JE, Bartoshuk LM, Kidd JR, Duffy VB.

Chem Senses. 2008 Mar;33(3):255-65. doi: 10.1093/chemse/bjm084. Epub 2008 Jan 21.

PMID:
18209019
45.

The genetic structure of Pacific Islanders.

Friedlaender JS, Friedlaender FR, Reed FA, Kidd KK, Kidd JR, Chambers GK, Lea RA, Loo JH, Koki G, Hodgson JA, Merriwether DA, Weber JL.

PLoS Genet. 2008 Jan;4(1):e19. doi: 10.1371/journal.pgen.0040019. Erratum in: PLoS Genet. 2008 Mar;4(3). doi: 10.1371/annotation/cbdd11a0-4a29-4e7c-9e4e-c00a184c7777.

46.

Effect of carbohydrate intake during recovery from eccentric exercise on interleukin-6 and muscle-damage markers.

Miles MP, Pearson SD, Andring JM, Kidd JR, Volpe SL.

Int J Sport Nutr Exerc Metab. 2007 Dec;17(6):507-20.

PMID:
18156658
47.

Diurnal variation, response to eccentric exercise, and association of inflammatory mediators with muscle damage variables.

Miles MP, Andring JM, Pearson SD, Gordon LK, Kasper C, Depner CM, Kidd JR.

J Appl Physiol (1985). 2008 Feb;104(2):451-8. Epub 2007 Dec 13.

48.

Multiple superoxide dismutase 1/splicing factor serine alanine 15 variants are associated with the development and progression of diabetic nephropathy: the Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications Genetics study.

Al-Kateb H, Boright AP, Mirea L, Xie X, Sutradhar R, Mowjoodi A, Bharaj B, Liu M, Bucksa JM, Arends VL, Steffes MW, Cleary PA, Sun W, Lachin JM, Thorner PS, Ho M, McKnight AJ, Maxwell AP, Savage DA, Kidd KK, Kidd JR, Speed WC, Orchard TJ, Miller RG, Sun L, Bull SB, Paterson AD; Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications Research Group.

Diabetes. 2008 Jan;57(1):218-28. Epub 2007 Oct 3.

49.

Geographically separate increases in the frequency of the derived ADH1B*47His allele in eastern and western Asia.

Li H, Mukherjee N, Soundararajan U, Tarnok Z, Barta C, Khaliq S, Mohyuddin A, Kajuna SL, Mehdi SQ, Kidd JR, Kidd KK.

Am J Hum Genet. 2007 Oct;81(4):842-6. Epub 2007 Aug 24.

50.

Global diversity and evidence for coevolution of KIR and HLA.

Single RM, Martin MP, Gao X, Meyer D, Yeager M, Kidd JR, Kidd KK, Carrington M.

Nat Genet. 2007 Sep;39(9):1114-9. Epub 2007 Aug 12.

PMID:
17694058

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