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Items: 1 to 50 of 224

1.

Lyme Disease Patient Trajectories Learned from Electronic Medical Data for Stratification of Disease Risk and Therapeutic Response.

Ichikawa O, Glicksberg BS, Genes N, Kidd BA, Li L, Dudley JT.

Sci Rep. 2019 Mar 14;9(1):4460. doi: 10.1038/s41598-019-41128-x.

2.

Precision Medicine for Relapsed Multiple Myeloma on the Basis of an Integrative Multiomics Approach.

Laganà A, Beno I, Melnekoff D, Leshchenko V, Madduri D, Ramdas D, Sanchez L, Niglio S, Perumal D, Kidd BA, Miotto R, Shaknovich R, Chari A, Cho HJ, Barlogie B, Jagannath S, Dudley JT, Parekh S.

JCO Precis Oncol. 2018;2018. doi: 10.1200/PO.18.00019. Epub 2018 Aug 8.

3.

Facile Removal of Homogeneous SABRE Catalysts for Purifying Hyperpolarized Metronidazole, a Potential Hypoxia Sensor.

Kidd BE, Gesiorski JL, Gemeinhardt ME, Shchepin RV, Kovtunov KV, Koptyug IV, Chekmenev EY, Goodson BM.

J Phys Chem C Nanomater Interfaces. 2018 Jul 26;122(29):16848-16852. doi: 10.1021/acs.jpcc.8b05758. Epub 2018 Jun 26.

PMID:
30559921
4.

A versatile synthetic route to the preparation of 15 N heterocycles.

Chukanov NV, Kidd BE, Kovtunova LM, Bukhtiyarov VI, Shchepin RV, Chekmenev EY, Goodson BM, Kovtunov KV, Koptyug IV.

J Labelled Comp Radiopharm. 2018 Dec 11. doi: 10.1002/jlcr.3699. [Epub ahead of print]

PMID:
30537260
5.

High-Throughput Identification of the Plasma Proteomic Signature of Inflammatory Bowel Disease.

Di Narzo AF, Brodmerkel C, Telesco SE, Argmann C, Peters LA, Li K, Kidd B, Dudley J, Cho J, Schadt EE, Kasarskis A, Dobrin R, Hao K.

J Crohns Colitis. 2019 Mar 30;13(4):462-471. doi: 10.1093/ecco-jcc/jjy190.

6.

MetaCyto: A Tool for Automated Meta-analysis of Mass and Flow Cytometry Data.

Hu Z, Jujjavarapu C, Hughey JJ, Andorf S, Lee HC, Gherardini PF, Spitzer MH, Thomas CG, Campbell J, Dunn P, Wiser J, Kidd BA, Dudley JT, Nolan GP, Bhattacharya S, Butte AJ.

Cell Rep. 2018 Jul 31;24(5):1377-1388. doi: 10.1016/j.celrep.2018.07.003.

7.

Toward Cleavable Metabolic/pH Sensing "Double Agents" Hyperpolarized by NMR Signal Amplification by Reversible Exchange.

Kidd BE, Mashni JA, Limbach MN, Shi F, Chekmenev EY, Hou Y, Goodson BM.

Chemistry. 2018 Jul 25;24(42):10641-10645. doi: 10.1002/chem.201802622. Epub 2018 Jun 29.

PMID:
29800491
8.

Pro: Mechanical Ventilation Should Be Continued During Cardiopulmonary Bypass.

Bhatia M, Kidd B, Kumar PA.

J Cardiothorac Vasc Anesth. 2018 Aug;32(4):1998-2000. doi: 10.1053/j.jvca.2018.02.031. Epub 2018 Feb 22. No abstract available.

PMID:
29573951
9.

Isolation and Identification of the Follicular Microbiome: Implications for Acne Research.

Hall JB, Cong Z, Imamura-Kawasawa Y, Kidd BA, Dudley JT, Thiboutot DM, Nelson AM.

J Invest Dermatol. 2018 Sep;138(9):2033-2040. doi: 10.1016/j.jid.2018.02.038. Epub 2018 Mar 13.

PMID:
29548797
10.

Parahydrogen-Based Hyperpolarization for Biomedicine.

Hövener JB, Pravdivtsev AN, Kidd B, Bowers CR, Glöggler S, Kovtunov KV, Plaumann M, Katz-Brull R, Buckenmaier K, Jerschow A, Reineri F, Theis T, Shchepin RV, Wagner S, Bhattacharya P, Zacharias NM, Chekmenev EY.

Angew Chem Int Ed Engl. 2018 Aug 27;57(35):11140-11162. doi: 10.1002/anie.201711842. Epub 2018 Aug 1. Review.

PMID:
29484795
11.

Cell-specific prediction and application of drug-induced gene expression profiles.

Hodos R, Zhang P, Lee HC, Duan Q, Wang Z, Clark NR, Ma'ayan A, Wang F, Kidd B, Hu J, Sontag D, Dudley J.

Pac Symp Biocomput. 2018;23:32-43.

12.

Imaging of Biomolecular NMR Signals Amplified by Reversible Exchange with Parahydrogen Inside an MRI Scanner.

Kovtunov KV, Kidd BE, Salnikov OG, Bales LB, Gemeinhardt ME, Gesiorski J, Shchepin RV, Chekmenev EY, Goodson BM, Koptyug IV.

J Phys Chem C Nanomater Interfaces. 2017 Nov 22;121(46):25994-25999. doi: 10.1021/acs.jpcc.7b10549. Epub 2017 Nov 1.

13.

A functional genomics predictive network model identifies regulators of inflammatory bowel disease.

Peters LA, Perrigoue J, Mortha A, Iuga A, Song WM, Neiman EM, Llewellyn SR, Di Narzo A, Kidd BA, Telesco SE, Zhao Y, Stojmirovic A, Sendecki J, Shameer K, Miotto R, Losic B, Shah H, Lee E, Wang M, Faith JJ, Kasarskis A, Brodmerkel C, Curran M, Das A, Friedman JR, Fukui Y, Humphrey MB, Iritani BM, Sibinga N, Tarrant TK, Argmann C, Hao K, Roussos P, Zhu J, Zhang B, Dobrin R, Mayer LF, Schadt EE.

Nat Genet. 2017 Oct;49(10):1437-1449. doi: 10.1038/ng.3947. Epub 2017 Sep 11.

14.

Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors.

Anderson JP, Sperschneider J, Win J, Kidd B, Yoshida K, Hane J, Saunders DGO, Singh KB.

Sci Rep. 2017 Sep 5;7(1):10410. doi: 10.1038/s41598-017-10405-y.

15.

Environments Tune and Select Cellular Diversity.

Kidd BA.

Trends Immunol. 2017 Sep;38(9):617-618. doi: 10.1016/j.it.2017.07.006. Epub 2017 Jul 31. Review.

PMID:
28774723
17.

Integrative network analysis identifies novel drivers of pathogenesis and progression in newly diagnosed multiple myeloma.

Laganà A, Perumal D, Melnekoff D, Readhead B, Kidd BA, Leshchenko V, Kuo PY, Keats J, DeRome M, Yesil J, Auclair D, Lonial S, Chari A, Cho HJ, Barlogie B, Jagannath S, Dudley JT, Parekh S.

Leukemia. 2018 Jan;32(1):120-130. doi: 10.1038/leu.2017.197. Epub 2017 Jun 23.

PMID:
28642592
18.

Functional metabolomics as a tool to analyze Mediator function and structure in plants.

Davoine C, Abreu IN, Khajeh K, Blomberg J, Kidd BN, Kazan K, Schenk PM, Gerber L, Nilsson O, Moritz T, Björklund S.

PLoS One. 2017 Jun 22;12(6):e0179640. doi: 10.1371/journal.pone.0179640. eCollection 2017.

19.

Ethylene Signaling Is Important for Isoflavonoid-Mediated Resistance to Rhizoctonia solani in Roots of Medicago truncatula.

Liu Y, Hassan S, Kidd BN, Garg G, Mathesius U, Singh KB, Anderson JP.

Mol Plant Microbe Interact. 2017 Sep;30(9):691-700. doi: 10.1094/MPMI-03-17-0057-R. Epub 2017 Jun 21.

20.

Diatom communities on commercial biocidal fouling control coatings after one year of immersion in the marine environment.

Muthukrishnan T, Dobretsov S, De Stefano M, Abed RMM, Kidd B, Finnie AA.

Mar Environ Res. 2017 Aug;129:102-112. doi: 10.1016/j.marenvres.2017.05.001. Epub 2017 May 4.

PMID:
28499739
21.

MEDIATOR18 and MEDIATOR20 confer susceptibility to Fusarium oxysporum in Arabidopsis thaliana.

Fallath T, Kidd BN, Stiller J, Davoine C, Björklund S, Manners JM, Kazan K, Schenk PM.

PLoS One. 2017 Apr 25;12(4):e0176022. doi: 10.1371/journal.pone.0176022. eCollection 2017.

22.

Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.

Shameer K, Glicksberg BS, Hodos R, Johnson KW, Badgeley MA, Readhead B, Tomlinson MS, O'Connor T, Miotto R, Kidd BA, Chen R, Ma'ayan A, Dudley JT.

Brief Bioinform. 2018 Jul 20;19(4):656-678. doi: 10.1093/bib/bbw136.

23.

Automated cell type discovery and classification through knowledge transfer.

Lee HC, Kosoy R, Becker CE, Dudley JT, Kidd BA.

Bioinformatics. 2017 Jun 1;33(11):1689-1695. doi: 10.1093/bioinformatics/btx054.

24.

High-Throughput Characterization of Blood Serum Proteomics of IBD Patients with Respect to Aging and Genetic Factors.

Di Narzo AF, Telesco SE, Brodmerkel C, Argmann C, Peters LA, Li K, Kidd B, Dudley J, Cho J, Schadt EE, Kasarskis A, Dobrin R, Hao K.

PLoS Genet. 2017 Jan 27;13(1):e1006565. doi: 10.1371/journal.pgen.1006565. eCollection 2017 Jan.

25.

Integrative Analysis of Disease Signatures Shows Inflammation Disrupts Juvenile Experience-Dependent Cortical Plasticity.

Smith MR, Burman P, Sadahiro M, Kidd BA, Dudley JT, Morishita H.

eNeuro. 2017 Jan 18;3(6). pii: ENEURO.0240-16.2016. doi: 10.1523/ENEURO.0240-16.2016. eCollection 2016 Nov-Dec.

26.

Novel Therapeutics Identification for Fibrosis in Renal Allograft Using Integrative Informatics Approach.

Li L, Greene I, Readhead B, Menon MC, Kidd BA, Uzilov AV, Wei C, Philippe N, Schroppel B, He JC, Chen R, Dudley JT, Murphy B.

Sci Rep. 2017 Jan 4;7:39487. doi: 10.1038/srep39487.

27.

Intracoronary Imaging, Cholesterol Efflux, and Transcriptomes After Intensive Statin Treatment: The YELLOW II Study.

Kini AS, Vengrenyuk Y, Shameer K, Maehara A, Purushothaman M, Yoshimura T, Matsumura M, Aquino M, Haider N, Johnson KW, Readhead B, Kidd BA, Feig JE, Krishnan P, Sweeny J, Milind M, Moreno P, Mehran R, Kovacic JC, Baber U, Dudley JT, Narula J, Sharma S.

J Am Coll Cardiol. 2017 Feb 14;69(6):628-640. doi: 10.1016/j.jacc.2016.10.029. Epub 2016 Oct 29.

28.

Genomic Analysis of Kidney Allograft Injury Identifies Hematopoietic Cell Kinase as a Key Driver of Renal Fibrosis.

Wei C, Li L, Menon MC, Zhang W, Fu J, Kidd B, Keung KL, Woytovich C, Greene I, Xiao W, Salem F, Yi Z, He JC, Dudley JT, Murphy B.

J Am Soc Nephrol. 2017 May;28(5):1385-1393. doi: 10.1681/ASN.2016020238. Epub 2016 Dec 7.

29.

Transcriptional Profiling of Egg Allergy and Relationship to Disease Phenotype.

Kosoy R, Agashe C, Grishin A, Leung DY, Wood RA, Sicherer SH, Jones SM, Burks AW, Davidson WF, Lindblad RW, Dawson P, Merad M, Kidd BA, Dudley JT, Sampson HA, Berin MC.

PLoS One. 2016 Oct 27;11(10):e0163831. doi: 10.1371/journal.pone.0163831. eCollection 2016.

30.

Defective Signaling in the JAK-STAT Pathway Tracks with Chronic Inflammation and Cardiovascular Risk in Aging Humans.

Shen-Orr SS, Furman D, Kidd BA, Hadad F, Lovelace P, Huang YW, Rosenberg-Hasson Y, Mackey S, Grisar FA, Pickman Y, Maecker HT, Chien YH, Dekker CL, Wu JC, Butte AJ, Davis MM.

Cell Syst. 2016 Oct 26;3(4):374-384.e4. doi: 10.1016/j.cels.2016.09.009. Epub 2016 Oct 13.

31.

Evaluation of direct-to-consumer low-volume lab tests in healthy adults.

Kidd BA, Hoffman G, Zimmerman N, Li L, Morgan JW, Glowe PK, Botwin GJ, Parekh S, Babic N, Doust MW, Stock GB, Schadt EE, Dudley JT.

J Clin Invest. 2016 Jul 1;126(7):2773. doi: 10.1172/JCI88464. Epub 2016 Jul 1. No abstract available.

32.

Blood and Intestine eQTLs from an Anti-TNF-Resistant Crohn's Disease Cohort Inform IBD Genetic Association Loci.

Di Narzo AF, Peters LA, Argmann C, Stojmirovic A, Perrigoue J, Li K, Telesco S, Kidd B, Walker J, Dudley J, Cho J, Schadt EE, Kasarskis A, Curran M, Dobrin R, Hao K.

Clin Transl Gastroenterol. 2016 Jun 23;7(6):e177. doi: 10.1038/ctg.2016.34.

33.

Observational analysis of near-peer and faculty tutoring in problem-based learning groups.

Cianciolo AT, Kidd B, Murray S.

Med Educ. 2016 Jul;50(7):757-67. doi: 10.1111/medu.12969.

PMID:
27295480
34.

Deep Patient: An Unsupervised Representation to Predict the Future of Patients from the Electronic Health Records.

Miotto R, Li L, Kidd BA, Dudley JT.

Sci Rep. 2016 May 17;6:26094. doi: 10.1038/srep26094.

35.

Cross-Tissue Regulatory Gene Networks in Coronary Artery Disease.

Talukdar HA, Foroughi Asl H, Jain RK, Ermel R, Ruusalepp A, Franzén O, Kidd BA, Readhead B, Giannarelli C, Kovacic JC, Ivert T, Dudley JT, Civelek M, Lusis AJ, Schadt EE, Skogsberg J, Michoel T, Björkegren JL.

Cell Syst. 2016 Mar 23;2(3):196-208. doi: 10.1016/j.cels.2016.02.002. Epub 2016 Mar 3.

36.

In silico methods for drug repurposing and pharmacology.

Hodos RA, Kidd BA, Shameer K, Readhead BP, Dudley JT.

Wiley Interdiscip Rev Syst Biol Med. 2016 May;8(3):186-210. doi: 10.1002/wsbm.1337. Epub 2016 Apr 15. Review.

37.

Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat.

Foley RC, Kidd BN, Hane JK, Anderson JP, Singh KB.

PLoS One. 2016 Mar 31;11(3):e0152548. doi: 10.1371/journal.pone.0152548. eCollection 2016.

38.

Integrative network modeling approaches to personalized cancer medicine.

Kidd BA, Readhead BP, Eden C, Parekh S, Dudley JT.

Per Med. 2015 Jun 1;12(3):245-257.

39.

Evaluation of direct-to-consumer low-volume lab tests in healthy adults.

Kidd BA, Hoffman G, Zimmerman N, Li L, Morgan JW, Glowe PK, Botwin GJ, Parekh S, Babic N, Doust MW, Stock GB, Schadt EE, Dudley JT.

J Clin Invest. 2016 May 2;126(5):1734-44. doi: 10.1172/JCI86318. Epub 2016 Mar 28. Erratum in: J Clin Invest. 2016 Jul 1;126(7):2773.

40.

Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.

Williams AH, Sharma M, Thatcher LF, Azam S, Hane JK, Sperschneider J, Kidd BN, Anderson JP, Ghosh R, Garg G, Lichtenzveig J, Kistler HC, Shea T, Young S, Buck SA, Kamphuis LG, Saxena R, Pande S, Ma LJ, Varshney RK, Singh KB.

BMC Genomics. 2016 Mar 5;17:191. doi: 10.1186/s12864-016-2486-8.

41.

What matters is more than just the choice of pharmaceutical agent.

Kidd B, Day E, Strang J.

Addiction. 2016 May;111(5):779-81. doi: 10.1111/add.13312. Epub 2016 Feb 27. No abstract available.

PMID:
26920349
42.

Polygenic overlap between schizophrenia risk and antipsychotic response: a genomic medicine approach.

Ruderfer DM, Charney AW, Readhead B, Kidd BA, Kähler AK, Kenny PJ, Keiser MJ, Moran JL, Hultman CM, Scott SA, Sullivan PF, Purcell SM, Dudley JT, Sklar P.

Lancet Psychiatry. 2016 Apr;3(4):350-7. doi: 10.1016/S2215-0366(15)00553-2. Epub 2016 Feb 23.

43.

Variants in TRIM22 That Affect NOD2 Signaling Are Associated With Very-Early-Onset Inflammatory Bowel Disease.

Li Q, Lee CH, Peters LA, Mastropaolo LA, Thoeni C, Elkadri A, Schwerd T, Zhu J, Zhang B, Zhao Y, Hao K, Dinarzo A, Hoffman G, Kidd BA, Murchie R, Al Adham Z, Guo C, Kotlarz D, Cutz E, Walters TD, Shouval DS, Curran M, Dobrin R, Brodmerkel C, Snapper SB, Klein C, Brumell JH, Hu M, Nanan R, Snanter-Nanan B, Wong M, Le Deist F, Haddad E, Roifman CM, Deslandres C, Griffiths AM, Gaskin KJ, Uhlig HH, Schadt EE, Muise AM.

Gastroenterology. 2016 May;150(5):1196-1207. doi: 10.1053/j.gastro.2016.01.031. Epub 2016 Feb 4.

44.

Decoding the immune response to successful influenza vaccination.

Kidd BA.

Nat Immunol. 2016 Feb;17(2):113-4. doi: 10.1038/ni.3372. No abstract available.

PMID:
26784255
45.

Mapping the effects of drugs on the immune system.

Kidd BA, Wroblewska A, Boland MR, Agudo J, Merad M, Tatonetti NP, Brown BD, Dudley JT.

Nat Biotechnol. 2016 Jan;34(1):47-54. doi: 10.1038/nbt.3367. Epub 2015 Nov 30.

46.

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes.

Carvalhais LC, Dennis PG, Badri DV, Kidd BN, Vivanco JM, Schenk PM.

Mol Plant Microbe Interact. 2015 Sep;28(9):1049-58. doi: 10.1094/MPMI-01-15-0016-R. Epub 2015 Aug 26.

47.

Clonal Deletion Prunes but Does Not Eliminate Self-Specific αβ CD8(+) T Lymphocytes.

Yu W, Jiang N, Ebert PJ, Kidd BA, Müller S, Lund PJ, Juang J, Adachi K, Tse T, Birnbaum ME, Newell EW, Wilson DM, Grotenbreg GM, Valitutti S, Quake SR, Davis MM.

Immunity. 2015 May 19;42(5):929-41. doi: 10.1016/j.immuni.2015.05.001.

48.

Cytomegalovirus infection enhances the immune response to influenza.

Furman D, Jojic V, Sharma S, Shen-Orr SS, Angel CJ, Onengut-Gumuscu S, Kidd BA, Maecker HT, Concannon P, Dekker CL, Thomas PG, Davis MM.

Sci Transl Med. 2015 Apr 1;7(281):281ra43. doi: 10.1126/scitranslmed.aaa2293.

49.

Medical and ethical concerns regarding women with hyperandrogenism and elite sport.

Sonksen P, Ferguson-Smith MA, Bavington LD, Holt RI, Cowan DA, Catlin DH, Kidd B, Davis G, Davis P, Edwards L, Tamar-Mattis A.

J Clin Endocrinol Metab. 2015 Mar;100(3):825-7. doi: 10.1210/jc.2014-3206. Epub 2015 Jan 14. No abstract available.

PMID:
25587808
50.

Molecular defense responses in roots and the rhizosphere against Fusarium oxysporum.

Chen YC, Kidd BN, Carvalhais LC, Schenk PM.

Plant Signal Behav. 2014;9(12):e977710. doi: 10.4161/15592324.2014.977710. Review.

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