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Items: 1 to 50 of 75

1.

A Novel Approach to Assess Salt Stress Tolerance in Wheat Using Hyperspectral Imaging.

Moghimi A, Yang C, Miller ME, Kianian SF, Marchetto PM.

Front Plant Sci. 2018 Aug 24;9:1182. doi: 10.3389/fpls.2018.01182. eCollection 2018.

2.

Detection of Race-Specific Resistance Against Puccinia coronata f. sp. avenae in Brachypodium Species.

Omidvar V, Dugyala S, Li F, Rottschaefer SM, Miller ME, Ayliffe M, Moscou MJ, Kianian SF, Figueroa M.

Phytopathology. 2018 Dec;108(12):1443-1454. doi: 10.1094/PHYTO-03-18-0084-R. Epub 2018 Oct 31.

PMID:
29923800
3.

High-resolution crossover mapping reveals similarities and differences of male and female recombination in maize.

Kianian PMA, Wang M, Simons K, Ghavami F, He Y, Dukowic-Schulze S, Sundararajan A, Sun Q, Pillardy J, Mudge J, Chen C, Kianian SF, Pawlowski WP.

Nat Commun. 2018 Jun 18;9(1):2370. doi: 10.1038/s41467-018-04562-5.

4.

Comparative analysis of transcriptome in two wheat genotypes with contrasting levels of drought tolerance.

Kumar J, Gunapati S, Kianian SF, Singh SP.

Protoplasma. 2018 Sep;255(5):1487-1504. doi: 10.1007/s00709-018-1237-x. Epub 2018 Apr 12.

PMID:
29651660
5.

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust.

Miller ME, Zhang Y, Omidvar V, Sperschneider J, Schwessinger B, Raley C, Palmer JM, Garnica D, Upadhyaya N, Rathjen J, Taylor JM, Park RF, Dodds PN, Hirsch CD, Kianian SF, Figueroa M.

MBio. 2018 Feb 20;9(1). pii: e01650-17. doi: 10.1128/mBio.01650-17.

6.

Identification, introgression, and molecular marker genetic analysis and selection of a highly effective novel oat crown rust resistance from diploid oat, Avena strigosa.

Rines HW, Miller ME, Carson M, Chao S, Tiede T, Wiersma J, Kianian SF.

Theor Appl Genet. 2018 Mar;131(3):721-733. doi: 10.1007/s00122-017-3031-0. Epub 2017 Dec 6.

PMID:
29222636
7.

Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize.

He Y, Wang M, Dukowic-Schulze S, Zhou A, Tiang CL, Shilo S, Sidhu GK, Eichten S, Bradbury P, Springer NM, Buckler ES, Levy AA, Sun Q, Pillardy J, Kianian PMA, Kianian SF, Chen C, Pawlowski WP.

Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):12231-12236. doi: 10.1073/pnas.1713225114. Epub 2017 Oct 30.

8.

Puccinia coronata f. sp. avenae: a threat to global oat production.

Nazareno ES, Li F, Smith M, Park RF, Kianian SF, Figueroa M.

Mol Plant Pathol. 2018 May;19(5):1047-1060. doi: 10.1111/mpp.12608. Epub 2017 Dec 10. Review.

PMID:
28846186
9.

Optimization and Comparative Analysis of Plant Organellar DNA Enrichment Methods Suitable for Next-generation Sequencing.

Miller ME, Liberatore KL, Kianian SF.

J Vis Exp. 2017 Jul 28;(125). doi: 10.3791/55528.

10.

A High Resolution Radiation Hybrid Map of Wheat Chromosome 4A.

Balcárková B, Frenkel Z, Škopová M, Abrouk M, Kumar A, Chao S, Kianian SF, Akhunov E, Korol AB, Doležel J, Valárik M.

Front Plant Sci. 2017 Jan 10;7:2063. doi: 10.3389/fpls.2016.02063. eCollection 2016.

11.

Dissection of Genetic Factors underlying Wheat Kernel Shape and Size in an Elite × Nonadapted Cross using a High Density SNP Linkage Map.

Kumar A, Mantovani EE, Seetan R, Soltani A, Echeverry-Solarte M, Jain S, Simsek S, Doehlert D, Alamri MS, Elias EM, Kianian SF, Mergoum M.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.09.0081.

12.

Gene Evolutionary Trajectories and GC Patterns Driven by Recombination in Zea mays.

Sundararajan A, Dukowic-Schulze S, Kwicklis M, Engstrom K, Garcia N, Oviedo OJ, Ramaraj T, Gonzales MD, He Y, Wang M, Sun Q, Pillardy J, Kianian SF, Pawlowski WP, Chen C, Mudge J.

Front Plant Sci. 2016 Sep 22;7:1433. eCollection 2016.

13.

Dissecting Plant Chromosomes by the Use of Ionizing Radiation.

Kianian PM, Liberatore KL, Miller ME, Hegstad JB, Kianian SF.

Methods Mol Biol. 2016;1429:91-101. doi: 10.1007/978-1-4939-3622-9_8.

PMID:
27511169
14.

A Population of Deletion Mutants and an Integrated Mapping and Exome-seq Pipeline for Gene Discovery in Maize.

Jia S, Li A, Morton K, Avoles-Kianian P, Kianian SF, Zhang C, Holding D.

G3 (Bethesda). 2016 Aug 9;6(8):2385-95. doi: 10.1534/g3.116.030528.

15.

The role of mitochondria in plant development and stress tolerance.

Liberatore KL, Dukowic-Schulze S, Miller ME, Chen C, Kianian SF.

Free Radic Biol Med. 2016 Nov;100:238-256. doi: 10.1016/j.freeradbiomed.2016.03.033. Epub 2016 Mar 30. Review.

PMID:
27036362
16.

Fast-forward genetics by radiation hybrids to saturate the locus regulating nuclear-cytoplasmic compatibility in Triticum.

Bassi FM, Ghavami F, Hayden MJ, Wang Y, Forrest KL, Kong S, Dizon R, Michalak de Jimenez MK, Meinhardt SW, Mergoum M, Gu YQ, Kianian SF.

Plant Biotechnol J. 2016 Aug;14(8):1716-26. doi: 10.1111/pbi.12532. Epub 2016 Feb 24.

17.

Novel nuclear-cytoplasmic interaction in wheat (Triticum aestivum) induces vigorous plants.

Soltani A, Kumar A, Mergoum M, Pirseyedi SM, Hegstad JB, Mazaheri M, Kianian SF.

Funct Integr Genomics. 2016 Mar;16(2):171-82. doi: 10.1007/s10142-016-0475-2. Epub 2016 Feb 9.

PMID:
26860316
18.

Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes.

Kumar A, Seetan R, Mergoum M, Tiwari VK, Iqbal MJ, Wang Y, Al-Azzam O, Šimková H, Luo MC, Dvorak J, Gu YQ, Denton A, Kilian A, Lazo GR, Kianian SF.

BMC Genomics. 2015 Oct 16;16:800. doi: 10.1186/s12864-015-2030-2.

19.

Toward a better understanding of the genomic region harboring Fusarium head blight resistance QTL Qfhs.ndsu-3AS in durum wheat.

Zhu X, Zhong S, Chao S, Gu YQ, Kianian SF, Elias E, Cai X.

Theor Appl Genet. 2016 Jan;129(1):31-43. doi: 10.1007/s00122-015-2606-x. Epub 2015 Sep 18.

PMID:
26385373
20.

Reliable Radiation Hybrid Maps: An Efficient Scalable Clustering-Based Approach.

Seetan RI, Denton AM, Al-Azzam O, Kumar A, Iqbal MJ, Kianian SF.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Sep-Oct;11(5):788-800. doi: 10.1109/TCBB.2014.2329310.

PMID:
26356853
21.

Development of a D genome specific marker resource for diploid and hexaploid wheat.

Wang Y, Drader T, Tiwari VK, Dong L, Kumar A, Huo N, Ghavami F, Iqbal MJ, Lazo GR, Leonard J, Gill BS, Kianian SF, Luo MC, Gu YQ.

BMC Genomics. 2015 Aug 28;16:646. doi: 10.1186/s12864-015-1852-2.

22.

Analysis of ATP6 sequence diversity in the Triticum-Aegilops species group reveals the crucial role of rearrangement in mitochondrial genome evolution.

Soltani A, Ghavami F, Mergoum M, Hegstad J, Noyszewski A, Meinhardt S, Kianian SF.

Genome. 2014 May;57(5):279-88. doi: 10.1139/gen-2014-0024. Epub 2014 Jul 30.

PMID:
25170648
23.

Mitochondrial dynamics and the cell cycle.

Kianian PM, Kianian SF.

Front Plant Sci. 2014 May 27;5:222. doi: 10.3389/fpls.2014.00222. eCollection 2014. Review.

24.

Accelerated evolution of the mitochondrial genome in an alloplasmic line of durum wheat.

Noyszewski AK, Ghavami F, Alnemer LM, Soltani A, Gu YQ, Huo N, Meinhardt S, Kianian PM, Kianian SF.

BMC Genomics. 2014 Jan 25;15:67. doi: 10.1186/1471-2164-15-67.

25.

Deletion mutagenesis identifies a haploinsufficient role for γ-zein in opaque2 endosperm modification.

Yuan L, Dou Y, Kianian SF, Zhang C, Holding DR.

Plant Physiol. 2014 Jan;164(1):119-30. doi: 10.1104/pp.113.230961. Epub 2013 Nov 8.

26.

Radiation hybrid QTL mapping of Tdes2 involved in the first meiotic division of wheat.

Bassi FM, Kumar A, Zhang Q, Paux E, Huttner E, Kilian A, Dizon R, Feuillet C, Xu SS, Kianian SF.

Theor Appl Genet. 2013 Aug;126(8):1977-90. doi: 10.1007/s00122-013-2111-z. Epub 2013 May 29.

PMID:
23715938
27.

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor.

Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KF, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, Dvorak J.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7940-5. doi: 10.1073/pnas.1219082110. Epub 2013 Apr 22.

28.

A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus.

Michalak de Jimenez MK, Bassi FM, Ghavami F, Simons K, Dizon R, Seetan RI, Alnemer LM, Denton AM, Doğramacı M, Šimková H, Doležel J, Seth K, Luo MC, Dvorak J, Gu YQ, Kianian SF.

Funct Integr Genomics. 2013 Mar;13(1):19-32. doi: 10.1007/s10142-013-0318-3. Epub 2013 Mar 12.

PMID:
23479086
29.

Wheat Zapper: a flexible online tool for colinearity studies in grass genomes.

Alnemer LM, Seetan RI, Bassi FM, Chitraranjan C, Helsene A, Loree P, Goshn SB, Gu YQ, Luo MC, Iqbal MJ, Lazo GR, Denton AM, Kianian SF.

Funct Integr Genomics. 2013 Mar;13(1):11-7. doi: 10.1007/s10142-013-0317-4. Epub 2013 Mar 10.

PMID:
23474942
30.

PIECE: a database for plant gene structure comparison and evolution.

Wang Y, You FM, Lazo GR, Luo MC, Thilmony R, Gordon S, Kianian SF, Gu YQ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1159-66. doi: 10.1093/nar/gks1109. Epub 2012 Nov 24.

31.

Endosperm tolerance of paternal aneuploidy allows radiation hybrid mapping of the wheat D-genome and a measure of γ ray-induced chromosome breaks.

Tiwari VK, Riera-Lizarazu O, Gunn HL, Lopez K, Iqbal MJ, Kianian SF, Leonard JM.

PLoS One. 2012;7(11):e48815. doi: 10.1371/journal.pone.0048815. Epub 2012 Nov 7.

32.

Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii.

Kumar A, Simons K, Iqbal MJ, de Jiménez MM, Bassi FM, Ghavami F, Al-Azzam O, Drader T, Wang Y, Luo MC, Gu YQ, Denton A, Lazo GR, Xu SS, Dvorak J, Kianian PM, Kianian SF.

BMC Genomics. 2012 Nov 5;13:597. doi: 10.1186/1471-2164-13-597.

33.

DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum.

Kumar A, Bassi FM, Paux E, Al-Azzam O, de Jimenez MM, Denton AM, Gu YQ, Huttner E, Kilian A, Kumar S, Goyal A, Iqbal MJ, Tiwari VK, Dogramaci M, Balyan HS, Dhaliwal HS, Gupta PK, Randhawa GS, Feuillet C, Pawlowski WP, Kianian SF.

BMC Genomics. 2012 Jul 24;13:339. doi: 10.1186/1471-2164-13-339.

34.

Population structure and linkage disequilibrium in Lupinus albus L. germplasm and its implication for association mapping.

Iqbal MJ, Mamidi S, Ahsan R, Kianian SF, Coyne CJ, Hamama AA, Narina SS, Bhardwaj HL.

Theor Appl Genet. 2012 Aug;125(3):517-30. doi: 10.1007/s00122-012-1850-6. Epub 2012 Mar 28.

PMID:
22454146
35.

Mixed model association mapping for fusarium head blight resistance in tunisian-derived durum wheat populations.

Ghavami F, Elias EM, Mamidi S, Ansari O, Sargolzaei M, Adhikari T, Mergoum M, Kianian SF.

G3 (Bethesda). 2011 Aug;1(3):209-18. doi: 10.1534/g3.111.000489. Epub 2011 Aug 1.

36.

A method to produce radiation hybrids for the D-genome chromosomes of wheat (Triticum aestivum L.).

Riera-Lizarazu O, Leonard JM, Tiwari VK, Kianian SF.

Cytogenet Genome Res. 2010 Jul;129(1-3):234-40. doi: 10.1159/000312723. Epub 2010 May 22.

PMID:
20501975
37.

The polyembryo gene (OsPE) in rice.

Puri A, Basha PO, Kumar M, Rajpurohit D, Randhawa GS, Kianian SF, Rishi A, Dhaliwal HS.

Funct Integr Genomics. 2010 Aug;10(3):359-66. doi: 10.1007/s10142-009-0139-6. Epub 2009 Oct 9.

PMID:
19816724
38.

Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat.

Wanjugi H, Coleman-Derr D, Huo N, Kianian SF, Luo MC, Wu J, Anderson O, Gu YQ.

Genome. 2009 Jun;52(6):576-87. doi: 10.1139/g09-033.

PMID:
19483776
39.

Identification and Molecular Mapping of a Gene Conferring Resistance to Pyrenophora tritici-repentis Race 3 in Tetraploid Wheat.

Singh PK, Gonzalez-Hernandez JL, Mergoum M, Ali S, Adhikari TB, Kianian SF, Elias EM, Hughes GR.

Phytopathology. 2006 Aug;96(8):885-9. doi: 10.1094/PHYTO-96-0885.

40.

Radiation hybrid (RH) and HAPPY mapping in plants.

Riera-Lizarazu O, Vales MI, Kianian SF.

Cytogenet Genome Res. 2008;120(3-4):233-40. doi: 10.1159/000121072. Epub 2008 May 22. Review.

PMID:
18504352
41.

Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.).

Chao S, Lazo GR, You F, Crossman CC, Hummel DD, Lui N, Laudencia-Chingcuanco D, Anderson JA, Close TJ, Dubcovsky J, Gill BS, Gill KS, Gustafson JP, Kianian SF, Lapitan NL, Nguyen HT, Sorrells ME, McGuire PE, Qualset CO, Anderson OD.

Genome. 2006 May;49(5):531-44.

42.

High-resolution radiation hybrid map of wheat chromosome 1D.

Kalavacharla V, Hossain K, Gu Y, Riera-Lizarazu O, Vales MI, Bhamidimarri S, Gonzalez-Hernandez JL, Maan SS, Kianian SF.

Genetics. 2006 Jun;173(2):1089-99. Epub 2006 Apr 19.

43.

Map-based analysis of genes affecting the brittle rachis character in tetraploid wheat (Triticum turgidum L.).

Nalam VJ, Vales MI, Watson CJ, Kianian SF, Riera-Lizarazu O.

Theor Appl Genet. 2006 Jan;112(2):373-81. Epub 2005 Nov 19.

PMID:
16328232
44.

Dormancy genes from weedy rice respond divergently to seed development environments.

Gu XY, Kianian SF, Foley ME.

Genetics. 2006 Feb;172(2):1199-211. Epub 2005 Nov 4.

45.

Isolation of three dormancy QTLs as Mendelian factors in rice.

Gu XY, Kianian SF, Foley ME.

Heredity (Edinb). 2006 Jan;96(1):93-9.

46.

Phenotypic selection for dormancy introduced a set of adaptive haplotypes from weedy into cultivated rice.

Gu XY, Kianian SF, Foley ME.

Genetics. 2005 Oct;171(2):695-704. Epub 2005 Jun 21.

47.

Genetic analysis of the species cytoplasm specific gene (scs d) derived from durum wheat.

Gehlhar SB, Simons KJ, Maan SS, Kianian SF.

J Hered. 2005 Jul-Aug;96(4):404-9. Epub 2005 Apr 20.

PMID:
15843637
48.

Chromosome sorting in tetraploid wheat and its potential for genome analysis.

Kubaláková M, Kovárová P, Suchánková P, Cíhalíková J, Bartos J, Lucretti S, Watanabe N, Kianian SF, Dolezel J.

Genetics. 2005 Jun;170(2):823-9. Epub 2005 Mar 31.

49.

Genetic analysis of adaptive syndromes interrelated with seed dormancy in weedy rice (Oryza sativa).

Gu XY, Kianian SF, Hareland GA, Hoffer BL, Foley ME.

Theor Appl Genet. 2005 Apr;110(6):1108-18. Epub 2005 Mar 22.

PMID:
15782297
50.

A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat.

Qi LL, Echalier B, Chao S, Lazo GR, Butler GE, Anderson OD, Akhunov ED, Dvorák J, Linkiewicz AM, Ratnasiri A, Dubcovsky J, Bermudez-Kandianis CE, Greene RA, Kantety R, La Rota CM, Munkvold JD, Sorrells SF, Sorrells ME, Dilbirligi M, Sidhu D, Erayman M, Randhawa HS, Sandhu D, Bondareva SN, Gill KS, Mahmoud AA, Ma XF, Miftahudin, Gustafson JP, Conley EJ, Nduati V, Gonzalez-Hernandez JL, Anderson JA, Peng JH, Lapitan NL, Hossain KG, Kalavacharla V, Kianian SF, Pathan MS, Zhang DS, Nguyen HT, Choi DW, Fenton RD, Close TJ, McGuire PE, Qualset CO, Gill BS.

Genetics. 2004 Oct;168(2):701-12.

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