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Comparative analysis of chromosome 2A molecular organization in diploid and hexaploid wheat.

Kaur P, Jindal S, Yadav B, Yadav I, Mahato A, Sharma P, Kaur S, Gupta OP, Vrána J, Šimková H, Doležel J, Gill BS, Meyer KFX, Khurana JP, Singh NK, Chhuneja P, Singh K.

Mol Biol Rep. 2020 Feb 8. doi: 10.1007/s11033-020-05295-9. [Epub ahead of print]


Differential quantitative regulation of specific gene groups and pathways under drought stress in rice.

Sharma E, Jain M, Khurana JP.

Genomics. 2019 Dec;111(6):1699-1712. doi: 10.1016/j.ygeno.2018.11.024. Epub 2018 Nov 26.


Validation of house-keeping genes for normalization of gene expression data during diurnal/circadian studies in rice by RT-qPCR.

Jain N, Vergish S, Khurana JP.

Sci Rep. 2018 Feb 16;8(1):3203. doi: 10.1038/s41598-018-21374-1.


Gut microbiome contributes to impairment of immunity in pulmonary tuberculosis patients by alteration of butyrate and propionate producers.

Maji A, Misra R, Dhakan DB, Gupta V, Mahato NK, Saxena R, Mittal P, Thukral N, Sharma E, Singh A, Virmani R, Gaur M, Singh H, Hasija Y, Arora G, Agrawal A, Chaudhry A, Khurana JP, Sharma VK, Lal R, Singh Y.

Environ Microbiol. 2018 Jan;20(1):402-419. doi: 10.1111/1462-2920.14015. Epub 2017 Dec 21.


The OsFBK1 E3 Ligase Subunit Affects Anther and Root Secondary Cell Wall Thickenings by Mediating Turnover of a Cinnamoyl-CoA Reductase.

Borah P, Khurana JP.

Plant Physiol. 2018 Mar;176(3):2148-2165. doi: 10.1104/pp.17.01733. Epub 2018 Jan 2.


Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.

Singh M, Gupta A, Singh D, Khurana JP, Laxmi A.

Sci Rep. 2017 Nov 23;7(1):16101. doi: 10.1038/s41598-017-16239-y.


Gene encoding vesicle-associated membrane protein-associated protein from Triticum aestivum (TaVAP) confers tolerance to drought stress.

Singh B, Khurana P, Khurana JP, Singh P.

Cell Stress Chaperones. 2018 May;23(3):411-428. doi: 10.1007/s12192-017-0854-1. Epub 2017 Nov 7.


Genome Organization of Sphingobium indicum B90A: An Archetypal Hexachlorocyclohexane (HCH) Degrading Genotype.

Verma H, Bajaj A, Kumar R, Kaur J, Anand S, Nayyar N, Puri A, Singh Y, Khurana JP, Lal R.

Genome Biol Evol. 2017 Sep 1;9(9):2191-2197. doi: 10.1093/gbe/evx133.


OsbZIP48, a HY5 Transcription Factor Ortholog, Exerts Pleiotropic Effects in Light-Regulated Development.

Burman N, Bhatnagar A, Khurana JP.

Plant Physiol. 2018 Feb;176(2):1262-1285. doi: 10.1104/pp.17.00478. Epub 2017 Aug 3.


The unc-53 gene negatively regulates rac GTPases to inhibit unc-5 activity during Distal tip cell migrations in C. elegans.

Pandey A, Yadav V, Sharma A, Khurana JP, Pandey GK.

Cell Adh Migr. 2018 May 4;12(3):195-203. doi: 10.1080/19336918.2017.1345413. Epub 2017 Oct 26.


Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium.

Kumar R, Verma H, Haider S, Bajaj A, Sood U, Ponnusamy K, Nagar S, Shakarad MN, Negi RK, Singh Y, Khurana JP, Gilbert JA, Lal R.

mSystems. 2017 May 23;2(3). pii: e00020-17. doi: 10.1128/mSystems.00020-17. eCollection 2017 May-Jun.


Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach.

Borah P, Sharma E, Kaur A, Chandel G, Mohapatra T, Kapoor S, Khurana JP.

Sci Rep. 2017 Feb 9;7:42131. doi: 10.1038/srep42131.


Molecular and Functional Characterization of GR2-R1 Event Based Backcross Derived Lines of Golden Rice in the Genetic Background of a Mega Rice Variety Swarna.

Bollinedi H, S GK, Prabhu KV, Singh NK, Mishra S, Khurana JP, Singh AK.

PLoS One. 2017 Jan 9;12(1):e0169600. doi: 10.1371/journal.pone.0169600. eCollection 2017.


Wheat Brassinosteroid-Insensitive1 (TaBRI1) Interacts with Members of TaSERK Gene Family and Cause Early Flowering and Seed Yield Enhancement in Arabidopsis.

Singh A, Breja P, Khurana JP, Khurana P.

PLoS One. 2016 Jun 20;11(6):e0153273. doi: 10.1371/journal.pone.0153273. eCollection 2016.


Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.

Bhattacharjee A, Khurana JP, Jain M.

Front Plant Sci. 2016 May 10;7:627. doi: 10.3389/fpls.2016.00627. eCollection 2016.


Rice Improvement Through Genome-Based Functional Analysis and Molecular Breeding in India.

Agarwal P, Parida SK, Raghuvanshi S, Kapoor S, Khurana P, Khurana JP, Tyagi AK.

Rice (N Y). 2016 Dec;9(1):1. doi: 10.1186/s12284-015-0073-2. Epub 2016 Jan 7.


A pathogenesis related-10 protein CaARP functions as aldo/keto reductase to scavenge cytotoxic aldehydes.

Jain D, Khandal H, Khurana JP, Chattopadhyay D.

Plant Mol Biol. 2016 Jan;90(1-2):171-87. doi: 10.1007/s11103-015-0405-z. Epub 2015 Nov 14.


Identification of Novel SNP in Promoter Sequence of TaGW2-6A Associated with Grain Weight and Other Agronomic Traits in Wheat (Triticum aestivum L.).

Jaiswal V, Gahlaut V, Mathur S, Agarwal P, Khandelwal MK, Khurana JP, Tyagi AK, Balyan HS, Gupta PK.

PLoS One. 2015 Jun 15;10(6):e0129400. doi: 10.1371/journal.pone.0129400. eCollection 2015.


Arsenic rich Himalayan hot spring metagenomics reveal genetically novel predator-prey genotypes.

Sangwan N, Lambert C, Sharma A, Gupta V, Khurana P, Khurana JP, Sockett RE, Gilbert JA, Lal R.

Environ Microbiol Rep. 2015 Dec;7(6):812-23. doi: 10.1111/1758-2229.12297. Epub 2015 Jul 1.


Pan-genome dynamics of Pseudomonas gene complements enriched across hexachlorocyclohexane dumpsite.

Sharma A, Sangwan N, Negi V, Kohli P, Khurana JP, Rao DL, Lal R.

BMC Genomics. 2015 Apr 18;16:313. doi: 10.1186/s12864-015-1488-2.


Genome-wide association mapping of salinity tolerance in rice (Oryza sativa).

Kumar V, Singh A, Mithra SV, Krishnamurthy SL, Parida SK, Jain S, Tiwari KK, Kumar P, Rao AR, Sharma SK, Khurana JP, Singh NK, Mohapatra T.

DNA Res. 2015 Apr;22(2):133-45. doi: 10.1093/dnares/dsu046. Epub 2015 Jan 27.


Stage-specific reprogramming of gene expression characterizes Lr48-mediated adult plant leaf rust resistance in wheat.

Dhariwal R, Gahlaut V, Govindraj BR, Singh D, Mathur S, Vyas S, Bandopadhyay R, Khurana JP, Tyagi AK, Prabhu KV, Mukhopadhyay K, Balyan HS, Gupta PK.

Funct Integr Genomics. 2015 Mar;15(2):233-45. doi: 10.1007/s10142-014-0416-x. Epub 2014 Nov 29.


Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways.

Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R.

BMC Genomics. 2014 Nov 23;15:1014. doi: 10.1186/1471-2164-15-1014.


A multi-step phosphorelay two-component system impacts on tolerance against dehydration stress in common wheat.

Gahlaut V, Mathur S, Dhariwal R, Khurana JP, Tyagi AK, Balyan HS, Gupta PK.

Funct Integr Genomics. 2014 Dec;14(4):707-16. doi: 10.1007/s10142-014-0398-8. Epub 2014 Sep 17.


A seed preferential heat shock transcription factor from wheat provides abiotic stress tolerance and yield enhancement in transgenic Arabidopsis under heat stress environment.

Chauhan H, Khurana N, Agarwal P, Khurana JP, Khurana P.

PLoS One. 2013 Nov 12;8(11):e79577. doi: 10.1371/journal.pone.0079577. eCollection 2013.


Draft Genome Sequence of Sphingobium ummariense Strain RL-3, a Hexachlorocyclohexane-Degrading Bacterium.

Kohli P, Dua A, Sangwan N, Oldach P, Khurana JP, Lal R.

Genome Announc. 2013 Nov 14;1(6). pii: e00956-13. doi: 10.1128/genomeA.00956-13.


Cryptochrome 1 regulates growth and development in Brassica through alteration in the expression of genes involved in light, phytohormone and stress signalling.

Sharma P, Chatterjee M, Burman N, Khurana JP.

Plant Cell Environ. 2014 Apr;37(4):961-77. doi: 10.1111/pce.12212. Epub 2013 Nov 14.


Evidence for the role of wheat eukaryotic translation initiation factor 3 subunit g (TaeIF3g) in abiotic stress tolerance.

Singh B, Chauhan H, Khurana JP, Khurana P, Singh P.

Gene. 2013 Dec 15;532(2):177-85. doi: 10.1016/j.gene.2013.09.078. Epub 2013 Sep 29.


Draft Genome Sequence of Sphingobium lactosutens Strain DS20T, Isolated from a Hexachlorocyclohexane Dumpsite.

Kumar R, Dwivedi V, Negi V, Khurana JP, Lal R.

Genome Announc. 2013 Sep 19;1(5). pii: e00753-13. doi: 10.1128/genomeA.00753-13.


Draft Genome Sequence of a Hexachlorocyclohexane-Degrading Bacterium, Sphingobium baderi Strain LL03T.

Kaur J, Verma H, Tripathi C, Khurana JP, Lal R.

Genome Announc. 2013 Sep 19;1(5). pii: e00751-13. doi: 10.1128/genomeA.00751-13.


Draft Genome Sequence of Sphingobium sp. Strain HDIPO4, an Avid Degrader of Hexachlorocyclohexane.

Mukherjee U, Kumar R, Mahato NK, Khurana JP, Lal R.

Genome Announc. 2013 Sep 19;1(5). pii: e00749-13. doi: 10.1128/genomeA.00749-13.


Reconstructing an ancestral genotype of two hexachlorocyclohexane-degrading Sphingobium species using metagenomic sequence data.

Sangwan N, Verma H, Kumar R, Negi V, Lax S, Khurana P, Khurana JP, Gilbert JA, Lal R.

ISME J. 2014 Feb;8(2):398-408. doi: 10.1038/ismej.2013.153. Epub 2013 Sep 12.


Draft Genome Sequence of Sphingobium quisquiliarum Strain P25T, a Novel Hexachlorocyclohexane (HCH)-Degrading Bacterium Isolated from an HCH Dumpsite.

Kumar Singh A, Sangwan N, Sharma A, Gupta V, Khurana JP, Lal R.

Genome Announc. 2013 Sep 12;1(5). pii: e00717-13. doi: 10.1128/genomeA.00717-13.


Genome Sequence of Novosphingobium lindaniclasticum LE124T, Isolated from a Hexachlorocyclohexane Dumpsite.

Saxena A, Nayyar N, Sangwan N, Kumari R, Khurana JP, Lal R.

Genome Announc. 2013 Sep 12;1(5). pii: e00715-13. doi: 10.1128/genomeA.00715-13.


Draft Genome Sequence of Sphingobium chinhatense Strain IP26T, Isolated from a Hexachlorocyclohexane Dumpsite.

Niharika N, Sangwan N, Ahmad S, Singh P, Khurana JP, Lal R.

Genome Announc. 2013 Aug 29;1(4). pii: e00680-13. doi: 10.1128/genomeA.00680-13.


Bacteriophytochrome controls carotenoid-independent response to photodynamic stress in a non-photosynthetic rhizobacterium, Azospirillum brasilense Sp7.

Kumar S, Kateriya S, Singh VS, Tanwar M, Agarwal S, Singh H, Khurana JP, Amla DV, Tripathi AK.

Sci Rep. 2012;2:872. doi: 10.1038/srep00872. Epub 2012 Nov 19.


Comparative metagenomic analysis of soil microbial communities across three hexachlorocyclohexane contamination levels.

Sangwan N, Lata P, Dwivedi V, Singh A, Niharika N, Kaur J, Anand S, Malhotra J, Jindal S, Nigam A, Lal D, Dua A, Saxena A, Garg N, Verma M, Kaur J, Mukherjee U, Gilbert JA, Dowd SE, Raman R, Khurana P, Khurana JP, Lal R.

PLoS One. 2012;7(9):e46219. doi: 10.1371/journal.pone.0046219. Epub 2012 Sep 28.


Massive gene acquisitions in Mycobacterium indicus pranii provide a perspective on mycobacterial evolution.

Saini V, Raghuvanshi S, Khurana JP, Ahmed N, Hasnain SE, Tyagi AK, Tyagi AK.

Nucleic Acids Res. 2012 Nov;40(21):10832-50. doi: 10.1093/nar/gks793. Epub 2012 Sep 10.


Genome sequence of Acinetobacter sp. strain HA, isolated from the gut of the polyphagous insect pest Helicoverpa armigera.

Malhotra J, Dua A, Saxena A, Sangwan N, Mukherjee U, Pandey N, Rajagopal R, Khurana P, Khurana JP, Lal R.

J Bacteriol. 2012 Sep;194(18):5156. doi: 10.1128/JB.01194-12.


Genome sequence of Sphingobium indicum B90A, a hexachlorocyclohexane-degrading bacterium.

Anand S, Sangwan N, Lata P, Kaur J, Dua A, Singh AK, Verma M, Kaur J, Khurana JP, Khurana P, Mathur S, Lal R.

J Bacteriol. 2012 Aug;194(16):4471-2. doi: 10.1128/JB.00901-12.


Draft genome sequence of Thermus sp. strain RL, isolated from a hot water spring located atop the Himalayan ranges at Manikaran, India.

Dwivedi V, Sangwan N, Nigam A, Garg N, Niharika N, Khurana P, Khurana JP, Lal R.

J Bacteriol. 2012 Jul;194(13):3534. doi: 10.1128/JB.00604-12.


Development of SSR markers and construction of a linkage map in jute.

Das M, Banerjee S, Dhariwal R, Vyas S, Mir RR, Topdar N, Kundu A, Khurana JP, Tyagi AK, Sarkar D, Sinha MK, Balyan HS, Gupta PK.

J Genet. 2012;91(1):21-31.


The wheat chloroplastic small heat shock protein (sHSP26) is involved in seed maturation and germination and imparts tolerance to heat stress.

Chauhan H, Khurana N, Nijhavan A, Khurana JP, Khurana P.

Plant Cell Environ. 2012 Nov;35(11):1912-31. doi: 10.1111/j.1365-3040.2012.02525.x. Epub 2012 May 22.


Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice.

Sharma R, Agarwal P, Ray S, Deveshwar P, Sharma P, Sharma N, Nijhawan A, Jain M, Singh AK, Singh VP, Khurana JP, Tyagi AK, Kapoor S.

Funct Integr Genomics. 2012 Jun;12(2):229-48. doi: 10.1007/s10142-012-0274-3. Epub 2012 Mar 31.


Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699.

Verma M, Kaur J, Kumar M, Kumari K, Saxena A, Anand S, Nigam A, Ravi V, Raghuvanshi S, Khurana P, Tyagi AK, Khurana JP, Lal R.

J Bacteriol. 2011 Oct;193(19):5562-3. doi: 10.1128/JB.05819-11.


Use of methylation filtration and C(0)t fractionation for analysis of genome composition and comparative genomics in bread wheat.

Bandopadhyay R, Rustgi S, Chaudhuri RK, Khurana P, Khurana JP, Tyagi AK, Balyan HS, Houben A, Gupta PK.

J Genet Genomics. 2011 Jul 20;38(7):315-25. doi: 10.1016/j.jgg.2011.06.003. Epub 2011 Jul 14.


Occurrence of unique three-celled megagametophyte and single fertilization in an aquatic angiosperm-Dalzellia zeylanica (Podostemaceae-Tristichoideae).

Sehgal A, Khurana JP, Sethi M, Ara H.

Sex Plant Reprod. 2011 Sep;24(3):199-210. doi: 10.1007/s00497-010-0159-3. Epub 2010 Dec 25.


Identification and characterization of high temperature stress responsive genes in bread wheat (Triticum aestivum L.) and their regulation at various stages of development.

Chauhan H, Khurana N, Tyagi AK, Khurana JP, Khurana P.

Plant Mol Biol. 2011 Jan;75(1-2):35-51. doi: 10.1007/s11103-010-9702-8. Epub 2010 Oct 23.


Modulation of transcription factor and metabolic pathway genes in response to water-deficit stress in rice.

Ray S, Dansana PK, Giri J, Deveshwar P, Arora R, Agarwal P, Khurana JP, Kapoor S, Tyagi AK.

Funct Integr Genomics. 2011 Mar;11(1):157-78. doi: 10.1007/s10142-010-0187-y. Epub 2010 Sep 7.


Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis.

Chaudhary N, Nijhawan A, Khurana JP, Khurana P.

Mol Genet Genomics. 2010 Jan;283(1):13-33. doi: 10.1007/s00438-009-0495-x. Epub 2009 Nov 5.


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