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Items: 17

1.

Publisher Correction: Lipidome determinants of maximal lifespan in mammals.

Bozek K, Khrameeva EE, Reznick J, Omerbašić D, Bennett NC, Lewin GR, Azpurua J, Gorbunova V, Seluanov A, Regnard P, Wanert F, Marchal J, Pifferi F, Aujard F, Liu Z, Shi P, Pääbo S, Schroeder F, Willmitzer L, Giavalisco P, Khaitovich P.

Sci Rep. 2019 May 1;9(1):6972. doi: 10.1038/s41598-019-43122-9.

2.

Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila.

Ulianov SV, Doronin SA, Khrameeva EE, Kos PI, Luzhin AV, Starikov SS, Galitsyna AA, Nenasheva VV, Ilyin AA, Flyamer IM, Mikhaleva EA, Logacheva MD, Gelfand MS, Chertovich AV, Gavrilov AA, Razin SV, Shevelyov YY.

Nat Commun. 2019 Mar 12;10(1):1176. doi: 10.1038/s41467-019-09185-y.

3.

Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.

Luzhin AV, Flyamer IM, Khrameeva EE, Ulianov SV, Razin SV, Gavrilov AA.

J Cell Biochem. 2019 Mar;120(3):4494-4503. doi: 10.1002/jcb.27737. Epub 2018 Sep 27.

PMID:
30260021
4.

Neanderthal and Denisovan ancestry in Papuans: A functional study.

Akkuratov EE, Gelfand MS, Khrameeva EE.

J Bioinform Comput Biol. 2018 Apr;16(2):1840011. doi: 10.1142/S0219720018400115.

PMID:
29739306
5.

Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe.

Triska P, Chekanov N, Stepanov V, Khusnutdinova EK, Kumar GPA, Akhmetova V, Babalyan K, Boulygina E, Kharkov V, Gubina M, Khidiyatova I, Khitrinskaya I, Khrameeva EE, Khusainova R, Konovalova N, Litvinov S, Marusin A, Mazur AM, Puzyrev V, Ivanoshchuk D, Spiridonova M, Teslyuk A, Tsygankova S, Triska M, Trofimova N, Vajda E, Balanovsky O, Baranova A, Skryabin K, Tatarinova TV, Prokhortchouk E.

BMC Genet. 2017 Dec 28;18(Suppl 1):110. doi: 10.1186/s12863-017-0578-3.

6.

Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure.

Ulianov SV, Galitsyna AA, Flyamer IM, Golov AK, Khrameeva EE, Imakaev MV, Abdennur NA, Gelfand MS, Gavrilov AA, Razin SV.

Epigenetics Chromatin. 2017 Jul 11;10(1):35. doi: 10.1186/s13072-017-0142-4.

7.

Lipidome determinants of maximal lifespan in mammals.

Bozek K, Khrameeva EE, Reznick J, Omerbašić D, Bennett NC, Lewin GR, Azpurua J, Gorbunova V, Seluanov A, Regnard P, Wanert F, Marchal J, Pifferi F, Aujard F, Liu Z, Shi P, Pääbo S, Schroeder F, Willmitzer L, Giavalisco P, Khaitovich P.

Sci Rep. 2017 Jan 31;7(1):5. doi: 10.1038/s41598-017-00037-7. Erratum in: Sci Rep. 2019 May 1;9(1):6972.

8.

Unraveling the mechanisms of chromatin fibril packaging.

Gavrilov AA, Shevelyov YY, Ulianov SV, Khrameeva EE, Kos P, Chertovich A, Razin SV.

Nucleus. 2016 May 3;7(3):319-24. doi: 10.1080/19491034.2016.1190896.

9.

History of chromosome rearrangements reflects the spatial organization of yeast chromosomes.

Khrameeva EE, Fudenberg G, Gelfand MS, Mirny LA.

J Bioinform Comput Biol. 2016 Apr;14(2):1641002. doi: 10.1142/S021972001641002X. Epub 2016 Jan 28.

10.

Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry.

Flegontov P, Changmai P, Zidkova A, Logacheva MD, Altınışık NE, Flegontova O, Gelfand MS, Gerasimov ES, Khrameeva EE, Konovalova OP, Neretina T, Nikolsky YV, Starostin G, Stepanova VV, Travinsky IV, Tříska M, Tříska P, Tatarinova TV.

Sci Rep. 2016 Feb 11;6:20768. doi: 10.1038/srep20768.

11.

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.

Ulianov SV, Khrameeva EE, Gavrilov AA, Flyamer IM, Kos P, Mikhaleva EA, Penin AA, Logacheva MD, Imakaev MV, Chertovich A, Gelfand MS, Shevelyov YY, Razin SV.

Genome Res. 2016 Jan;26(1):70-84. doi: 10.1101/gr.196006.115. Epub 2015 Oct 30.

12.

Inter-chromosomal contact networks provide insights into Mammalian chromatin organization.

Kaufmann S, Fuchs C, Gonik M, Khrameeva EE, Mironov AA, Frishman D.

PLoS One. 2015 May 11;10(5):e0126125. doi: 10.1371/journal.pone.0126125. eCollection 2015.

13.

Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans.

Khrameeva EE, Bozek K, He L, Yan Z, Jiang X, Wei Y, Tang K, Gelfand MS, Prufer K, Kelso J, Paabo S, Giavalisco P, Lachmann M, Khaitovich P.

Nat Commun. 2014 Apr 1;5:3584. doi: 10.1038/ncomms4584.

14.

Biases in read coverage demonstrated by interlaboratory and interplatform comparison of 117 mRNA and genome sequencing experiments.

Khrameeva EE, Gelfand MS.

BMC Bioinformatics. 2012 Apr 19;13 Suppl 6:S4. doi: 10.1186/1471-2105-13-S6-S4.

15.

Spatial proximity and similarity of the epigenetic state of genome domains.

Khrameeva EE, Mironov AA, Fedonin GG, Khaitovich P, Gelfand MS.

PLoS One. 2012;7(4):e33947. doi: 10.1371/journal.pone.0033947. Epub 2012 Apr 4.

16.

Evidence for widespread association of mammalian splicing and conserved long-range RNA structures.

Pervouchine DD, Khrameeva EE, Pichugina MY, Nikolaienko OV, Gelfand MS, Rubtsov PM, Mironov AA.

RNA. 2012 Jan;18(1):1-15. doi: 10.1261/rna.029249.111. Epub 2011 Nov 29.

17.

Mutants of monomeric red fluorescent protein mRFP1 at residue 66: structure modeling by molecular dynamics and search for correlations with spectral properties.

Khrameeva EE, Drutsa VL, Vrzheshch EP, Dmitrienko DV, Vrzheshch PV.

Biochemistry (Mosc). 2008 Oct;73(10):1085-95.

PMID:
18991554

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