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Items: 11

1.

MiSeq: A Next Generation Sequencing Platform for Genomic Analysis.

Ravi RK, Walton K, Khosroheidari M.

Methods Mol Biol. 2018;1706:223-232. doi: 10.1007/978-1-4939-7471-9_12. Review.

PMID:
29423801
2.

Correction: Role of MicroRNA 1207-5P and Its Host Gene, the Long Non-Coding RNA Pvt1, as Mediators of Extracellular Matrix Accumulation in the Kidney: Implications for Diabetic Nephropathy.

Alvarez ML, Khosroheidari M, Eddy E, Kiefer J, DiStefano JK.

PLoS One. 2016 Dec 9;11(12):e0168353. doi: 10.1371/journal.pone.0168353. eCollection 2016.

3.

From Sample to Multi-Omics Conclusions in under 48 Hours.

Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R.

mSystems. 2016 Apr 26;1(2). pii: e00038-16. eCollection 2016 Mar-Apr.

4.

Methylome-wide Analysis of Chronic HIV Infection Reveals Five-Year Increase in Biological Age and Epigenetic Targeting of HLA.

Gross AM, Jaeger PA, Kreisberg JF, Licon K, Jepsen KL, Khosroheidari M, Morsey BM, Swindells S, Shen H, Ng CT, Flagg K, Chen D, Zhang K, Fox HS, Ideker T.

Mol Cell. 2016 Apr 21;62(2):157-168. doi: 10.1016/j.molcel.2016.03.019.

5.

MicroRNA-27a decreases the level and efficiency of the LDL receptor and contributes to the dysregulation of cholesterol homeostasis.

Alvarez ML, Khosroheidari M, Eddy E, Done SC.

Atherosclerosis. 2015 Oct;242(2):595-604. doi: 10.1016/j.atherosclerosis.2015.08.023. Epub 2015 Aug 20.

6.

Genetic and epigenetic profiling of CLL disease progression reveals limited somatic evolution and suggests a relationship to memory-cell development.

Smith EN, Ghia EM, DeBoever CM, Rassenti LZ, Jepsen K, Yoon KA, Matsui H, Rozenzhak S, Alakus H, Shepard PJ, Dai Y, Khosroheidari M, Bina M, Gunderson KL, Messer K, Muthuswamy L, Hudson TJ, Harismendy O, Barrett CL, Jamieson CH, Carson DA, Kipps TJ, Frazer KA.

Blood Cancer J. 2015 Apr 10;5:e303. doi: 10.1038/bcj.2015.14.

7.

Immunodeficiency and autoimmune enterocolopathy linked to NFAT5 haploinsufficiency.

Boland BS, Widjaja CE, Banno A, Zhang B, Kim SH, Stoven S, Peterson MR, Jones MC, Su HI, Crowe SE, Bui JD, Ho SB, Okugawa Y, Goel A, Marietta EV, Khosroheidari M, Jepsen K, Aramburu J, López-Rodríguez C, Sandborn WJ, Murray JA, Harismendy O, Chang JT.

J Immunol. 2015 Mar 15;194(6):2551-60. doi: 10.4049/jimmunol.1401463. Epub 2015 Feb 9.

8.

A modified precipitation method to isolate urinary exosomes.

Kanchi Ravi R, Khosroheidari M, DiStefano JK.

J Vis Exp. 2015 Jan 16;(95):51158. doi: 10.3791/51158.

9.

Biased estimates of clonal evolution and subclonal heterogeneity can arise from PCR duplicates in deep sequencing experiments.

Smith EN, Jepsen K, Khosroheidari M, Rassenti LZ, D'Antonio M, Ghia EM, Carson DA, Jamieson CH, Kipps TJ, Frazer KA.

Genome Biol. 2014 Aug 7;15(8):420. doi: 10.1186/s13059-014-0420-4.

10.

Role of microRNA 1207-5P and its host gene, the long non-coding RNA Pvt1, as mediators of extracellular matrix accumulation in the kidney: implications for diabetic nephropathy.

Alvarez ML, Khosroheidari M, Eddy E, Kiefer J.

PLoS One. 2013 Oct 25;8(10):e77468. doi: 10.1371/journal.pone.0077468. eCollection 2013. Erratum in: PLoS One. 2016 Dec 9;11(12 ):e0168353.

11.

Comparison of protein, microRNA, and mRNA yields using different methods of urinary exosome isolation for the discovery of kidney disease biomarkers.

Alvarez ML, Khosroheidari M, Kanchi Ravi R, DiStefano JK.

Kidney Int. 2012 Nov;82(9):1024-32. doi: 10.1038/ki.2012.256. Epub 2012 Jul 11.

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