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Items: 39

1.

Cooperation of mitochondrial and ER factors in quality control of tail-anchored proteins.

Dederer V, Khmelinskii A, Huhn AG, Okreglak V, Knop M, Lemberg MK.

Elife. 2019 Jun 7;8. pii: e45506. doi: 10.7554/eLife.45506. [Epub ahead of print]

2.

Micro cone beam computed tomography for sensitive assessment of radiation-induced late lung toxicity in preclinical models.

van Berlo D, Khmelinskii A, Gasparini A, Salguero FJ, Floot B, de Wit N, van de Ven M, Song JY, Coppes RP, Verheij M, Sonke JJ, Vens C.

Radiother Oncol. 2019 May 27;138:17-24. doi: 10.1016/j.radonc.2019.05.007. [Epub ahead of print]

PMID:
31146069
3.

Optical coherence tomography to detect acute esophageal radiation-induced damage in mice: a validation study.

Jelvehgaran P, de Bruin DM, Khmelinskii A, Borst G, Steinberg JD, Song JY, de Vos J, van Leeuwen TG, Alderliesten T, de Boer JF, van Herk M.

J Biophotonics. 2019 May 6:e201800440. doi: 10.1002/jbio.201800440. [Epub ahead of print]

PMID:
31058437
4.

Genome-wide C-SWAT library for high-throughput yeast genome tagging.

Meurer M, Duan Y, Sass E, Kats I, Herbst K, Buchmuller BC, Dederer V, Huber F, Kirrmaier D, Štefl M, Van Laer K, Dick TP, Lemberg MK, Khmelinskii A, Levy ED, Knop M.

Nat Methods. 2018 Aug;15(8):598-600. doi: 10.1038/s41592-018-0045-8. Epub 2018 Jul 9.

PMID:
29988096
5.

Determinants of the cytosolic turnover of mitochondrial intermembrane space proteins.

Kowalski L, Bragoszewski P, Khmelinskii A, Glow E, Knop M, Chacinska A.

BMC Biol. 2018 Jun 22;16(1):66. doi: 10.1186/s12915-018-0536-1.

6.

Mapping Degradation Signals and Pathways in a Eukaryotic N-terminome.

Kats I, Khmelinskii A, Kschonsak M, Huber F, Knieß RA, Bartosik A, Knop M.

Mol Cell. 2018 May 3;70(3):488-501.e5. doi: 10.1016/j.molcel.2018.03.033.

7.

Influence of full-length dystrophin on brain volumes in mouse models of Duchenne muscular dystrophy.

Kogelman B, Khmelinskii A, Verhaart I, Vliet LV, Bink DI, Aartsma-Rus A, Putten MV, Weerd LV.

PLoS One. 2018 Mar 30;13(3):e0194636. doi: 10.1371/journal.pone.0194636. eCollection 2018.

8.

Transit time mapping in the mouse brain using time-encoded pCASL.

Hirschler L, Munting LP, Khmelinskii A, Teeuwisse WM, Suidgeest E, Warnking JM, van der Weerd L, Barbier EL, van Osch MJP.

NMR Biomed. 2018 Feb;31(2). doi: 10.1002/nbm.3855. Epub 2017 Nov 21.

PMID:
29160952
9.

Upregulation of SPS100 gene expression by an antisense RNA via a switch of mRNA isoforms with different stabilities.

Bunina D, Štefl M, Huber F, Khmelinskii A, Meurer M, Barry JD, Kats I, Kirrmaier D, Huber W, Knop M.

Nucleic Acids Res. 2017 Nov 2;45(19):11144-11158. doi: 10.1093/nar/gkx737.

10.

MRI Mouse Brain Data of Ischemic Lesion after Transient Middle Cerebral Artery Occlusion.

Mulder IA, Khmelinskii A, Dzyubachyk O, de Jong S, Wermer MJH, Hoehn M, Lelieveldt BPF, van den Maagdenberg AMJM.

Front Neuroinform. 2017 Sep 6;11:51. doi: 10.3389/fninf.2017.00051. eCollection 2017. No abstract available.

11.

Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion.

Mulder IA, Khmelinskii A, Dzyubachyk O, de Jong S, Rieff N, Wermer MJ, Hoehn M, Lelieveldt BP, van den Maagdenberg AM.

Front Neuroinform. 2017 Jan 31;11:3. doi: 10.3389/fninf.2017.00003. eCollection 2017.

12.

Temporal and compartment-specific signals coordinate mitotic exit with spindle position.

Caydasi AK, Khmelinskii A, Duenas-Sanchez R, Kurtulmus B, Knop M, Pereira G.

Nat Commun. 2017 Jan 24;8:14129. doi: 10.1038/ncomms14129.

13.

Protein Abundance Control by Non-coding Antisense Transcription.

Huber F, Bunina D, Gupta I, Khmelinskii A, Meurer M, Theer P, Steinmetz LM, Knop M.

Cell Rep. 2016 Jun 21;15(12):2625-36. doi: 10.1016/j.celrep.2016.05.043. Epub 2016 Jun 9.

14.

One library to make them all: streamlining the creation of yeast libraries via a SWAp-Tag strategy.

Yofe I, Weill U, Meurer M, Chuartzman S, Zalckvar E, Goldman O, Ben-Dor S, Schütze C, Wiedemann N, Knop M, Khmelinskii A, Schuldiner M.

Nat Methods. 2016 Apr;13(4):371-378. doi: 10.1038/nmeth.3795. Epub 2016 Feb 29.

15.

Incomplete proteasomal degradation of green fluorescent proteins in the context of tandem fluorescent protein timers.

Khmelinskii A, Meurer M, Ho CT, Besenbeck B, Füller J, Lemberg MK, Bukau B, Mogk A, Knop M.

Mol Biol Cell. 2016 Jan 15;27(2):360-70. doi: 10.1091/mbc.E15-07-0525. Epub 2015 Nov 25.

16.

Morphological maturation of the mouse brain: An in vivo MRI and histology investigation.

Hammelrath L, Škokić S, Khmelinskii A, Hess A, van der Knaap N, Staring M, Lelieveldt BPF, Wiedermann D, Hoehn M.

Neuroimage. 2016 Jan 15;125:144-152. doi: 10.1016/j.neuroimage.2015.10.009. Epub 2015 Oct 14.

17.

Precise Anatomic Localization of Accumulated Lipids in Mfp2 Deficient Murine Brains Through Automated Registration of SIMS Images to the Allen Brain Atlas.

Škrášková K, Khmelinskii A, Abdelmoula WM, De Munter S, Baes M, McDonnell L, Dijkstra J, Heeren RM.

J Am Soc Mass Spectrom. 2015 Jun;26(6):948-57. doi: 10.1007/s13361-015-1146-6. Epub 2015 Apr 28.

18.

Protein quality control at the inner nuclear membrane.

Khmelinskii A, Blaszczak E, Pantazopoulou M, Fischer B, Omnus DJ, Le Dez G, Brossard A, Gunnarsson A, Barry JD, Meurer M, Kirrmaier D, Boone C, Huber W, Rabut G, Ljungdahl PO, Knop M.

Nature. 2014 Dec 18;516(7531):410-3. doi: 10.1038/nature14096.

19.

A memory system of negative polarity cues prevents replicative aging.

Meitinger F, Khmelinskii A, Morlot S, Kurtulmus B, Palani S, Andres-Pons A, Hub B, Knop M, Charvin G, Pereira G.

Cell. 2014 Nov 20;159(5):1056-1069. doi: 10.1016/j.cell.2014.10.014. Epub 2014 Nov 13.

20.

Interactive local super-resolution reconstruction of whole-body MRI mouse data: a pilot study with applications to bone and kidney metastases.

Dzyubachyk O, Khmelinskii A, Plenge E, Kok P, Snoeks TJ, Poot DH, Löwik CW, Botha CP, Niessen WJ, van der Weerd L, Meijering E, Lelieveldt BP.

PLoS One. 2014 Sep 29;9(9):e108730. doi: 10.1371/journal.pone.0108730. eCollection 2014.

21.

Analysis of protein dynamics with tandem fluorescent protein timers.

Khmelinskii A, Knop M.

Methods Mol Biol. 2014;1174:195-210. doi: 10.1007/978-1-4939-0944-5_13.

PMID:
24947383
22.

Analytical model for macromolecular partitioning during yeast cell division.

Kinkhabwala A, Khmelinskii A, Knop M.

BMC Biophys. 2014 Sep 23;7:10. doi: 10.1186/s13628-014-0010-6. eCollection 2014.

23.

Directional tissue migration through a self-generated chemokine gradient.

Donà E, Barry JD, Valentin G, Quirin C, Khmelinskii A, Kunze A, Durdu S, Newton LR, Fernandez-Minan A, Huber W, Knop M, Gilmour D.

Nature. 2013 Nov 14;503(7475):285-9. doi: 10.1038/nature12635. Epub 2013 Sep 25.

PMID:
24067609
24.

Brain maturation of the adolescent rat cortex and striatum: changes in volume and myelination.

Mengler L, Khmelinskii A, Diedenhofen M, Po C, Staring M, Lelieveldt BP, Hoehn M.

Neuroimage. 2014 Jan 1;84:35-44. doi: 10.1016/j.neuroimage.2013.08.034. Epub 2013 Aug 27.

25.

Segmentation and visual analysis of whole-body mouse skeleton microSPECT.

Khmelinskii A, Groen HC, Baiker M, de Jong M, Lelieveldt BP.

PLoS One. 2012;7(11):e48976. doi: 10.1371/journal.pone.0048976. Epub 2012 Nov 12.

26.

Tandem fluorescent protein timers for in vivo analysis of protein dynamics.

Khmelinskii A, Keller PJ, Bartosik A, Meurer M, Barry JD, Mardin BR, Kaufmann A, Trautmann S, Wachsmuth M, Pereira G, Huber W, Schiebel E, Knop M.

Nat Biotechnol. 2012 Jun 24;30(7):708-14. doi: 10.1038/nbt.2281.

PMID:
22729030
27.

Seamless gene tagging by endonuclease-driven homologous recombination.

Khmelinskii A, Meurer M, Duishoev N, Delhomme N, Knop M.

PLoS One. 2011;6(8):e23794. doi: 10.1371/journal.pone.0023794. Epub 2011 Aug 22.

28.

Artificial tethering to nuclear pores promotes partitioning of extrachromosomal DNA during yeast asymmetric cell division.

Khmelinskii A, Meurer M, Knop M, Schiebel E.

Curr Biol. 2011 Jan 11;21(1):R17-8. doi: 10.1016/j.cub.2010.11.034.

29.

Classifier-assisted metric for chromosome pairing.

Ventura R, Khmelinskii A, Sanches J.

Conf Proc IEEE Eng Med Biol Soc. 2010;2010:6729-32. doi: 10.1109/IEMBS.2010.5626237.

PMID:
21096087
30.

Articulated whole-body atlases for small animal image analysis: construction and applications.

Khmelinskii A, Baiker M, Kaijzel EL, Chen J, Reiber JH, Lelieveldt BP.

Mol Imaging Biol. 2011 Oct;13(5):898-910. doi: 10.1007/s11307-010-0386-x.

31.

Optical advances in skeletal imaging applied to bone metastases.

Snoeks TJ, Khmelinskii A, Lelieveldt BP, Kaijzel EL, Löwik CW.

Bone. 2011 Jan;48(1):106-14. doi: 10.1016/j.bone.2010.07.027. Epub 2010 Aug 3. Review.

PMID:
20688203
32.

Segregation of yeast nuclear pores.

Khmelinskii A, Keller PJ, Lorenz H, Schiebel E, Knop M.

Nature. 2010 Jul 22;466(7305):E1. doi: 10.1038/nature09255.

PMID:
20651645
33.

Cell cycle control of spindle elongation.

Roostalu J, Schiebel E, Khmelinskii A.

Cell Cycle. 2010 Mar 15;9(6):1084-90. Epub 2010 Mar 15. Review.

PMID:
20410686
34.

A novel metric for bone marrow cells chromosome pairing.

Khmelinskii A, Ventura R, Sanches J.

IEEE Trans Biomed Eng. 2010 Jun;57(6):1420-9. doi: 10.1109/TBME.2010.2040279. Epub 2010 Feb 17.

PMID:
20172790
35.

Phosphorylation-dependent protein interactions at the spindle midzone mediate cell cycle regulation of spindle elongation.

Khmelinskii A, Roostalu J, Roque H, Antony C, Schiebel E.

Dev Cell. 2009 Aug;17(2):244-56. doi: 10.1016/j.devcel.2009.06.011.

36.

Chromosome segregation: monopolin goes spindle.

Khmelinskii A, Schiebel E.

Curr Biol. 2009 Jun 23;19(12):R482-4. doi: 10.1016/j.cub.2009.05.006.

37.

Automatic chromosome pairing using mutual information.

Khmelinskii A, Ventura R, Sanches J.

Conf Proc IEEE Eng Med Biol Soc. 2008;2008:1918-21. doi: 10.1109/IEMBS.2008.4649562.

PMID:
19163065
38.

Assembling the spindle midzone in the right place at the right time.

Khmelinskii A, Schiebel E.

Cell Cycle. 2008 Feb 1;7(3):283-6. Epub 2007 Nov 21. Review.

PMID:
18235228
39.

Cdc14-regulated midzone assembly controls anaphase B.

Khmelinskii A, Lawrence C, Roostalu J, Schiebel E.

J Cell Biol. 2007 Jun 18;177(6):981-93. Epub 2007 Jun 11.

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