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Items: 1 to 50 of 148

1.

Eleven grand challenges in single-cell data science.

Lähnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Campbell KR, Beerenwinkel N, Mahfouz A, Pinello L, Skums P, Stamatakis A, Attolini CS, Aparicio S, Baaijens J, Balvert M, Barbanson B, Cappuccio A, Corleone G, Dutilh BE, Florescu M, Guryev V, Holmer R, Jahn K, Lobo TJ, Keizer EM, Khatri I, Kielbasa SM, Korbel JO, Kozlov AM, Kuo TH, Lelieveldt BPF, Mandoiu II, Marioni JC, Marschall T, Mölder F, Niknejad A, Raczkowski L, Reinders M, Ridder J, Saliba AE, Somarakis A, Stegle O, Theis FJ, Yang H, Zelikovsky A, McHardy AC, Raphael BJ, Shah SP, Schönhuth A.

Genome Biol. 2020 Feb 7;21(1):31. doi: 10.1186/s13059-020-1926-6. Review.

2.

Composite genome sequence of Bacillus clausii, a probiotic commercially available as Enterogermina®, and insights into its probiotic properties.

Khatri I, Sharma G, Subramanian S.

BMC Microbiol. 2019 Dec 30;19(1):307. doi: 10.1186/s12866-019-1680-7.

3.

Frequency, risk factors, and outcomes in patients with significant carotid artery disease admitted to King Abdulaziz Medical City, Riyadh with Ischemic Stroke.

Shaheen MA, Albelali AA, AlKanhal RM, AlSaqabi MK, AlTurki RM, AlAskar RS, Khan AH, Khatri IA.

Neurosciences (Riyadh). 2019 Oct;24(4):264-268. doi: 10.17712/nsj.2019.4.20190046.

PMID:
31872804
5.

Taxonomic insights into the phylogeny of Bacillus badius and proposal for its reclassification to the genus Pseudobacillus as Pseudobacillus badius comb. nov. and reclassification of Bacillus wudalianchiensis Liu et al., 2017 as Pseudobacillus wudalianchiensis comb. nov.

Verma A, Pal Y, Ojha AK, Kumari M, Khatri I, Rameshkumar N, Schumann P, Dastager SG, Mayilraj S, Subramanian S, Krishnamurthi S.

Syst Appl Microbiol. 2019 May;42(3):360-372. doi: 10.1016/j.syapm.2019.03.003. Epub 2019 Mar 16.

PMID:
30982666
6.

Systems Biology Approach to Identify Novel Genomic Determinants for Pancreatic Cancer Pathogenesis.

Khatri I, Ganguly K, Sharma S, Carmicheal J, Kaur S, Batra SK, Bhasin MK.

Sci Rep. 2019 Jan 15;9(1):123. doi: 10.1038/s41598-018-36328-w.

7.

A Synthetic Cross-Species CD200R1 Agonist Suppresses Inflammatory Immune Responses In Vivo.

Prodeus A, Sparkes A, Fischer NW, Cydzik M, Huang E, Khatri I, Young A, Woo L, Chow CW, Gorczynski R, Gariépy J.

Mol Ther Nucleic Acids. 2018 Sep 7;12:350-358. doi: 10.1016/j.omtn.2018.05.023. Epub 2018 Jul 3.

8.

Determination of system level alterations in host transcriptome due to Zika virus (ZIKV) Infection in retinal pigment epithelium.

Singh PK, Khatri I, Jha A, Pretto CD, Spindler KR, Arumugaswami V, Giri S, Kumar A, Bhasin MK.

Sci Rep. 2018 Jul 25;8(1):11209. doi: 10.1038/s41598-018-29329-2.

9.

Cell membrane-bound CD200 signals both via an extracellular domain and following nuclear translocation of a cytoplasmic fragment.

Chen Z, Kapus A, Khatri I, Kos O, Zhu F, Gorczynski RM.

Leuk Res. 2018 Jun;69:72-80. doi: 10.1016/j.leukres.2018.04.007. Epub 2018 Apr 19.

PMID:
29698858
10.

Corrigendum to "Regulation of fetal hemoglobin expression during hematopoietic stem cell development and its importance in bone metabolism and osteoporosis" [Int. Immunopharmacol. 57 (2018) 112-120].

Kos O, Alexander C, Brandenburg K, Chen Z, Heini A, Heumann D, Khatri I, Mach JP, Rietschel ET, Terskikh A, Ulmer AJ, Waelli T, Yu K, Zähringer U, Gorczynski RM.

Int Immunopharmacol. 2018 Jun;59:413. doi: 10.1016/j.intimp.2018.04.024. Epub 2018 Apr 19. No abstract available.

PMID:
29681496
11.

Corrigendum to "An altered REDOX environment, assisted by over-expression of fetal hemoglobins, protects from inflammatory colitis and reduces inflammatory cytokine expression" [Int. Immunopharmacol. 50 (2017) 69-76].

Gorczynski RM, Alexander C, Brandenburg K, Chen Z, Heini A, Neumann D, Mach JP, Rietschel ET, Terskikh A, Ulmer AJ, Yu K, Zahringer U, Khatri I.

Int Immunopharmacol. 2018 Jun;59:414. doi: 10.1016/j.intimp.2018.04.023. Epub 2018 Apr 19. No abstract available.

PMID:
29681495
12.

An autologous tumor vaccine for CLL.

Zhu F, Khatri I, Spaner D, Gorczynski RM.

Leuk Res. 2018 May;68:40-47. doi: 10.1016/j.leukres.2018.03.002. Epub 2018 Mar 2.

PMID:
29525600
13.

Regulation of fetal hemoglobin expression during hematopoietic stem cell development and its importance in bone metabolism and osteoporosis.

Kos O, Alexander C, Brandenburg K, Chen Z, Heini A, Heumann D, Khatri I, Mach JP, Rietschel ET, Terskikh A, Ulmer AJ, Waelli T, Yu K, Zähringer U, Gorczynski RM.

Int Immunopharmacol. 2018 Apr;57:112-120. doi: 10.1016/j.intimp.2018.02.010. Epub 2018 Feb 23. Erratum in: Int Immunopharmacol. 2018 Apr 19;:.

PMID:
29477972
14.

An overview of complications affecting the Central Nervous System following bariatric surgery.

Zafar A, Khatri IA.

Neurosciences (Riyadh). 2018 Jan;23(1):4-12. doi: 10.17712/nsj.2018.1.20170316. Review.

PMID:
29455214
15.

Importance of B cells to development of regulatory T cells and prolongation of tissue allograft survival in recipients receiving autologous bone marrow transplantation.

Gorczynski RM, Farrokhi K, Gorczynski C, Sadozai H, Zhu F, Khatri I.

Immunology. 2018 Jul;154(3):465-475. doi: 10.1111/imm.12895. Epub 2018 Feb 20.

16.

Analysis of cytokine immune response profile in response to inflammatory stimuli in mice with genetic defects in fetal and adult hemoglobin chain expression.

Khatri I, Alexander C, Brandenburg K, Chen Z, Heini A, Heumann D, Mach JP, Mazzoli V, Rietschel E, Terskikh A, Ulmer A, Yu K, Zähringer U, Gorczynski R.

Pharmacogenomics J. 2018 Jul;18(4):546-555. doi: 10.1038/s41397-017-0008-y. Epub 2018 Jan 4.

PMID:
29302041
17.

Comparative Genomics of Myxobacterial Chemosensory Systems.

Sharma G, Khatri I, Subramanian S.

J Bacteriol. 2018 Jan 10;200(3). pii: e00620-17. doi: 10.1128/JB.00620-17. Print 2018 Feb 1.

18.

Identification of novel small RNAs in Burkholderia cenocepacia KC-01 expressed under iron limitation and oxidative stress conditions.

Ghosh S, Dureja C, Khatri I, Subramanian S, Raychaudhuri S, Ghosh S.

Microbiology. 2017 Dec;163(12):1924-1936. doi: 10.1099/mic.0.000566.

PMID:
29099689
19.

Renal dysfunction as a predictor of acute stroke outcomes.

AboAlSamh DK, Abulaban AA, Khatri IA, Al-Khathaami AM.

Neurosciences (Riyadh). 2017 Oct;22(4):320-324. doi: 10.17712/nsj.2017.4.20170185.

20.

Examination into the taxonomic position of Bacillus thermotolerans Yang et al., 2013, proposal for its reclassification into a new genus and species Quasibacillus thermotolerans gen. nov., comb. nov. and reclassification of B. encimensis Dastager et al., 2015 as a later heterotypic synonym of B. badius.

Verma A, Pal Y, Khatri I, Ojha AK, Gruber-Vodicka H, Schumann P, Dastager S, Subramanian S, Mayilraj S, Krishnamurthi S.

Syst Appl Microbiol. 2017 Oct;40(7):411-422. doi: 10.1016/j.syapm.2017.07.010. Epub 2017 Sep 12.

PMID:
28947104
21.

An altered REDOX environment, assisted by over-expression of fetal hemoglobins, protects from inflammatory colitis and reduces inflammatory cytokine expression.

Gorczynski RM, Alexander C, Brandenburg K, Chen Z, Heini A, Neumann D, Mach JP, Rietschel ET, Terskikh A, Ulmer AJ, Yu K, Zahringer U, Khatri I.

Int Immunopharmacol. 2017 Sep;50:69-76. doi: 10.1016/j.intimp.2017.06.003. Epub 2017 Jun 20. Erratum in: Int Immunopharmacol. 2018 Apr 19;:.

PMID:
28641125
22.

Complete genome sequence and comparative genomics of the probiotic yeast Saccharomyces boulardii.

Khatri I, Tomar R, Ganesan K, Prasad GS, Subramanian S.

Sci Rep. 2017 Mar 23;7(1):371. doi: 10.1038/s41598-017-00414-2.

23.

Importance of CD200 expression by tumor or host cells to regulation of immunotherapy in a mouse breast cancer model.

Curry A, Khatri I, Kos O, Zhu F, Gorczynski R.

PLoS One. 2017 Feb 24;12(2):e0171586. doi: 10.1371/journal.pone.0171586. eCollection 2017.

24.

Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB.

Upadhyay U, Srivastava S, Khatri I, Nanda JS, Subramanian S, Arora A, Singh J.

Mol Biol Cell. 2017 Apr 15;28(8):1132-1146. doi: 10.1091/mbc.E16-07-0485. Epub 2017 Feb 22.

25.

A comparison of serum miRNAs influencing metastatic growth of EMT6 vs 4THM tumor cells in wild-type and CD200R1KO mice.

Gorczynski RM, Zhu F, Chen Z, Kos O, Khatri I.

Breast Cancer Res Treat. 2017 Apr;162(2):255-266. doi: 10.1007/s10549-017-4128-5. Epub 2017 Feb 3.

PMID:
28160157
26.
27.

Complete Genome of the Starch-Degrading Myxobacteria Sandaracinus amylolyticus DSM 53668T.

Sharma G, Khatri I, Subramanian S.

Genome Biol Evol. 2016 Aug 29;8(8):2520-9. doi: 10.1093/gbe/evw151.

28.

Complete Genomes of Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, Two Phylogenetically Distinct Probiotics.

Khatri I, Sharma S, Ramya TN, Subramanian S.

PLoS One. 2016 Jun 3;11(6):e0156745. doi: 10.1371/journal.pone.0156745. eCollection 2016.

29.

Characterization of CD200 Ectodomain Shedding.

Wong KK, Zhu F, Khatri I, Huo Q, Spaner DE, Gorczynski RM.

PLoS One. 2016 Apr 25;11(4):e0152073. doi: 10.1371/journal.pone.0152073. eCollection 2016.

30.

Septic cerebral venous sinus thrombosis.

Khatri IA, Wasay M.

J Neurol Sci. 2016 Mar 15;362:221-7. doi: 10.1016/j.jns.2016.01.035. Epub 2016 Jan 19. Review.

PMID:
26944152
31.

Bone-Prosthesis Junction for Active Tendon Implants: A Biomechanical Comparison of 2 Fixation Techniques.

Toney CB, Owen JR, Khatri IA, Wayne JS, McDowell CL.

J Hand Surg Am. 2016 Apr;41(4):526-31. doi: 10.1016/j.jhsa.2016.01.008. Epub 2016 Feb 12.

PMID:
26880494
32.

Cerebral venous sinus thrombosis in a patient with Cushings syndrome due to topical steroid.

Al-Khalaf AH, Khatri IA.

Neurosciences (Riyadh). 2016 Jan;21(1):75-6. doi: 10.17712/nsj.2016.1.20150534. No abstract available.

33.

Toll-like Receptor 2 Activation Promotes Tumor Dendritic Cell Dysfunction by Regulating IL-6 and IL-10 Receptor Signaling.

Tang M, Diao J, Gu H, Khatri I, Zhao J, Cattral MS.

Cell Rep. 2015 Dec 29;13(12):2851-64. doi: 10.1016/j.celrep.2015.11.053. Epub 2015 Dec 17.

34.

Randomized Controlled Trial to Evaluate the Efficacy of Oral Dexamethasone and Intramuscular Dexamethasone in Mandibular Third Molar Surgeries.

Sabhlok S, Kenjale P, Mony D, Khatri I, Kumar P.

J Clin Diagn Res. 2015 Nov;9(11):ZC48-51. doi: 10.7860/JCDR/2015/13930.6813. Epub 2015 Nov 1.

35.

Management of Midline Facial Clefts.

Mishra S, Sabhlok S, Panda PK, Khatri I.

J Maxillofac Oral Surg. 2015 Dec;14(4):883-90. doi: 10.1007/s12663-015-0763-8. Epub 2015 Mar 3. Review.

36.

Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T).

Khatri I, Subramanian S, Mayilraj S.

Genom Data. 2014 Mar 12;2:44-5. doi: 10.1016/j.gdata.2013.12.003. eCollection 2014 Dec.

37.

Genome sequencing and annotation of Acinetobacter junii strain MTCC 11364.

Khatri I, Singh NK, Subramanian S, Mayilraj S.

Genom Data. 2013 Nov 27;2:13-5. doi: 10.1016/j.gdata.2013.10.005. eCollection 2014 Dec.

38.

Genome sequencing and annotation of Acinetobacter haemolyticus strain MTCC 9819(T).

Khatri I, Singh NK, Subramanian S, Mayilraj S.

Genom Data. 2013 Nov 27;2:10-2. doi: 10.1016/j.gdata.2013.10.004. eCollection 2014 Dec.

39.

Genome sequencing and annotation of Acinetobacter gerneri strain MTCC 9824(T).

Singh NK, Khatri I, Subramanian S, Mayilraj S.

Genom Data. 2013 Nov 27;2:7-9. doi: 10.1016/j.gdata.2013.10.003. eCollection 2014 Dec.

40.

Genome sequencing and annotation of Acinetobacter gyllenbergii strain MTCC 11365(T).

Singh NK, Khatri I, Subramanian S, Mayilraj S.

Genom Data. 2013 Nov 27;2:4-6. doi: 10.1016/j.gdata.2013.10.002. eCollection 2014 Dec.

41.

Genome sequencing and annotation of Acinetobacter guillouiae strain MSP 4-18.

Singh NK, Khatri I, Subramanian S, Mayilraj S.

Genom Data. 2013 Nov 27;2:1-3. doi: 10.1016/j.gdata.2013.10.001. eCollection 2014 Dec.

42.

Evaluation of effect of topical ozone therapy on salivary Candidal carriage in oral candidiasis.

Khatri I, Moger G, Kumar NA.

Indian J Dent Res. 2015 Mar-Apr;26(2):158-62. doi: 10.4103/0970-9290.159146.

43.

Prevalence of the F-type lectin domain.

Bishnoi R, Khatri I, Subramanian S, Ramya TN.

Glycobiology. 2015 Aug;25(8):888-901. doi: 10.1093/glycob/cwv029. Epub 2015 May 5.

PMID:
25943580
44.

Genome sequence, comparative analysis, and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii.

Agrawal Y, Khatri I, Subramanian S, Shenoy BD.

Genome Biol Evol. 2015 Feb 25;7(3):916-30. doi: 10.1093/gbe/evv037.

45.

Arbovirus infections of the nervous system: current trends and future threats.

Wasay M, Khatri IA, Abd-Allah F.

Neurology. 2015 Jan 27;84(4):421-3. doi: 10.1212/WNL.0000000000001177. Review. No abstract available.

PMID:
25628429
46.

Systematic status of true katydids Sathrophyllia (Orthoptera, Tettigonioidea, Pseudophyllinae) from Pakistan, with description of two new species.

Sultana R, Panhwar WA, Wagan MS, Khatri I.

Zookeys. 2014 Dec 18;(466):1-11. doi: 10.3897/zookeys.466.8423. eCollection 2014.

47.

Genus Exitianus (Auchenorrhyncha, Cicadellidae, Deltocephalinae, and Chiasmini) in Tando Jam, Sindh, Pakistan.

Khatri I, Rustamani MA, Ahmed Z, Sultana R.

J Insect Sci. 2014 Jan 1;14. pii: 235. doi: 10.1093/jisesa/ieu097. Print 2014.

48.

Comparison of immunity in mice cured of primary/metastatic growth of EMT6 or 4THM breast cancer by chemotherapy or immunotherapy.

Gorczynski RM, Chen Z, Erin N, Khatri I, Podnos A.

PLoS One. 2014 Nov 19;9(11):e113597. doi: 10.1371/journal.pone.0113597. eCollection 2014.

49.

Long-Term Tolerance and Skin Allograft Survival in CD200tg Mice After Autologous Marrow Transplantation.

Gorczynski R, Chen Z, Khatri I, Yu K.

Transplantation. 2014 Dec 27;98(12):1271-8. doi: 10.1097/TP.0000000000000456.

PMID:
25340612
50.

Review of the idiocerine leafhoppers of Pakistan (Hemiptera, Cicadellidae) with a description of a new species.

Khatri I, Webb MD.

Zootaxa. 2014 Sep 5;3860(3):280-90. doi: 10.11646/zootaxa.3860.3.6.

PMID:
25283206

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