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Items: 35

1.

Copy number variation and variant discovery in Bullmastiff dogs.

Mortlock SA, Williamson P, Khatkar MS.

Anim Genet. 2019 Apr;50(2):177-181. doi: 10.1111/age.12754. Epub 2019 Feb 21.

PMID:
30793343
2.

Genomic Selection in Aquaculture: Application, Limitations and Opportunities With Special Reference to Marine Shrimp and Pearl Oysters.

Zenger KR, Khatkar MS, Jones DB, Khalilisamani N, Jerry DR, Raadsma HW.

Front Genet. 2019 Jan 23;9:693. doi: 10.3389/fgene.2018.00693. eCollection 2018. Review.

3.

The Coiled-Coil NLR Rph1, Confers Leaf Rust Resistance in Barley Cultivar Sudan.

Dracatos PM, Bartoš J, Elmansour H, Singh D, Karafiátová M, Zhang P, Steuernagel B, Svačina R, Cobbin JCA, Clark B, Hoxha S, Khatkar MS, Doležel J, Wulff BB, Park RF.

Plant Physiol. 2019 Apr;179(4):1362-1372. doi: 10.1104/pp.18.01052. Epub 2018 Dec 28.

4.

De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome.

Huerlimann R, Wade NM, Gordon L, Montenegro JD, Goodall J, McWilliam S, Tinning M, Siemering K, Giardina E, Donovan D, Sellars MJ, Cowley JA, Condon K, Coman GJ, Khatkar MS, Raadsma HW, Maes GE, Zenger KR, Jerry DR.

Sci Rep. 2018 Sep 10;8(1):13553. doi: 10.1038/s41598-018-31148-4.

5.

Estimation of the health and economic burden of human brucellosis in India.

Singh BB, Khatkar MS, Aulakh RS, Gill JPS, Dhand NK.

Prev Vet Med. 2018 Jun 1;154:148-155. doi: 10.1016/j.prevetmed.2018.03.023. Epub 2018 Mar 30.

PMID:
29685439
6.

A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei.

Jones DB, Jerry DR, Khatkar MS, Raadsma HW, Steen HV, Prochaska J, Forêt S, Zenger KR.

Sci Rep. 2017 Sep 4;7(1):10360. doi: 10.1038/s41598-017-10515-7.

7.

Identification of key contributors in complex population structures.

Neuditschko M, Raadsma HW, Khatkar MS, Jonas E, Steinig EJ, Flury C, Signer-Hasler H, Frischknecht M, von Niederhäusern R, Leeb T, Rieder S.

PLoS One. 2017 May 16;12(5):e0177638. doi: 10.1371/journal.pone.0177638. eCollection 2017.

8.

Data and the associated R code used to estimate health and economic burden of neurocysticercosis in India.

Singh BB, Khatkar MS, Gill JP, Dhand NK.

Data Brief. 2016 Mar 9;7:571-81. doi: 10.1016/j.dib.2016.02.079. eCollection 2016 Jun.

9.

A Meta-Assembly of Selection Signatures in Cattle.

Randhawa IA, Khatkar MS, Thomson PC, Raadsma HW.

PLoS One. 2016 Apr 5;11(4):e0153013. doi: 10.1371/journal.pone.0153013. eCollection 2016.

10.

Visualization of Genome Diversity in German Shepherd Dogs.

Mortlock SA, Booth R, Mazrier H, Khatkar MS, Williamson P.

Bioinform Biol Insights. 2016 Feb 10;9(Suppl 2):37-42. doi: 10.4137/BBI.S30524. eCollection 2015.

11.

Comparative Analysis of Genome Diversity in Bullmastiff Dogs.

Mortlock SA, Khatkar MS, Williamson P.

PLoS One. 2016 Jan 29;11(1):e0147941. doi: 10.1371/journal.pone.0147941. eCollection 2016.

12.

Estimation of the health and economic burden of neurocysticercosis in India.

Singh BB, Khatkar MS, Gill JP, Dhand NK.

Acta Trop. 2017 Jan;165:161-169. doi: 10.1016/j.actatropica.2016.01.017. Epub 2016 Jan 21.

PMID:
26802489
13.

Targeted Analysis Reveals an Important Role of JAK-STAT-SOCS Genes for Milk Production Traits in Australian Dairy Cattle.

Arun SJ, Thomson PC, Sheehy PA, Khatkar MS, Raadsma HW, Williamson P.

Front Genet. 2015 Dec 15;6:342. doi: 10.3389/fgene.2015.00342. eCollection 2015.

14.

netview p: a network visualization tool to unravel complex population structure using genome-wide SNPs.

Steinig EJ, Neuditschko M, Khatkar MS, Raadsma HW, Zenger KR.

Mol Ecol Resour. 2016 Jan;16(1):216-27. doi: 10.1111/1755-0998.12442. Epub 2015 Jul 24.

PMID:
26129944
15.

Composite Selection Signals for Complex Traits Exemplified Through Bovine Stature Using Multibreed Cohorts of European and African Bos taurus.

Randhawa IA, Khatkar MS, Thomson PC, Raadsma HW.

G3 (Bethesda). 2015 Apr 30;5(7):1391-401. doi: 10.1534/g3.115.017772.

16.

Additive and epistatic genome-wide association for growth and ultrasound scan measures of carcass-related traits in Brahman cattle.

Ali AA, Khatkar MS, Kadarmideen HN, Thomson PC.

J Anim Breed Genet. 2015 Apr;132(2):187-97. doi: 10.1111/jbg.12147. Epub 2015 Mar 6.

PMID:
25754883
17.

Increased temperature, but not acidification, enhances fertilization and development in a tropical urchin: potential for adaptation to a tropicalized eastern Australia.

Foo SA, Dworjanyn SA, Khatkar MS, Poore AG, Byrne M.

Evol Appl. 2014 Dec;7(10):1226-37. doi: 10.1111/eva.12218. Epub 2014 Oct 15.

18.

Genetic mapping of a new race specific resistance allele effective to Puccinia hordei at the Rph9/Rph12 locus on chromosome 5HL in barley.

Dracatos PM, Khatkar MS, Singh D, Park RF.

BMC Plant Biol. 2014 Dec 20;14:1598. doi: 10.1186/s12870-014-0382-4.

19.

Inheritance of prehaustorial resistance to Puccinia graminis f. sp. avenae in barley (Hordeum vulgare L.).

Dracatos PM, Ayliffe M, Khatkar MS, Fetch T Jr, Singh D, Park RF.

Mol Plant Microbe Interact. 2014 Nov;27(11):1253-62. doi: 10.1094/MPMI-05-14-0140-R.

20.

Composite selection signals can localize the trait specific genomic regions in multi-breed populations of cattle and sheep.

Randhawa IA, Khatkar MS, Thomson PC, Raadsma HW.

BMC Genet. 2014 Mar 17;15:34. doi: 10.1186/1471-2156-15-34.

21.

A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection.

Jones DB, Jerry DR, Khatkar MS, Raadsma HW, Zenger KR.

BMC Genomics. 2013 Nov 20;14:810. doi: 10.1186/1471-2164-14-810.

22.

NetView: a high-definition network-visualization approach to detect fine-scale population structures from genome-wide patterns of variation.

Neuditschko M, Khatkar MS, Raadsma HW.

PLoS One. 2012;7(10):e48375. doi: 10.1371/journal.pone.0048375. Epub 2012 Oct 31.

23.

Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle.

Khatkar MS, Moser G, Hayes BJ, Raadsma HW.

BMC Genomics. 2012 Oct 8;13:538. doi: 10.1186/1471-2164-13-538.

24.

Accuracy of direct genomic values in Holstein bulls and cows using subsets of SNP markers.

Moser G, Khatkar MS, Hayes BJ, Raadsma HW.

Genet Sel Evol. 2010 Oct 16;42:37. doi: 10.1186/1297-9686-42-37.

25.

Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates.

Khatkar MS, Hobbs M, Neuditschko M, Sölkner J, Nicholas FW, Raadsma HW.

BMC Bioinformatics. 2010 Apr 7;11:171. doi: 10.1186/1471-2105-11-171.

26.

A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers.

Moser G, Tier B, Crump RE, Khatkar MS, Raadsma HW.

Genet Sel Evol. 2009 Dec 31;41:56. doi: 10.1186/1297-9686-41-56.

27.

Predicting genetic merit for mastitis and fertility in dairy cattle using genome wide selection and high density SNP screens.

Raadsma HW, Moser G, Crump RE, Khatkar MS, Zenger KR, Cavanagh JAL, Hawken RJ, Hobbs M, Barris W, Solkner J, Nicholas FW, Tier B.

Dev Biol (Basel). 2008;132:219-223. doi: 10.1159/000317163.

PMID:
18817305
28.

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel.

Khatkar MS, Nicholas FW, Collins AR, Zenger KR, Cavanagh JA, Barris W, Schnabel RD, Taylor JF, Raadsma HW.

BMC Genomics. 2008 Apr 24;9:187. doi: 10.1186/1471-2164-9-187.

29.

A comparative location database (CompLDB): map integration within and between species.

Liao W, Collins A, Hobbs M, Khatkar MS, Luo J, Nicholas FW.

Mamm Genome. 2007 May;18(5):287-99. Epub 2007 Jun 23.

PMID:
17588189
30.

A primary assembly of a bovine haplotype block map based on a 15,036-single-nucleotide polymorphism panel genotyped in holstein-friesian cattle.

Khatkar MS, Zenger KR, Hobbs M, Hawken RJ, Cavanagh JA, Barris W, McClintock AE, McClintock S, Thomson PC, Tier B, Nicholas FW, Raadsma HW.

Genetics. 2007 Jun;176(2):763-72. Epub 2007 Apr 15.

31.
32.

Linkage disequilibrium on chromosome 6 in Australian Holstein-Friesian cattle.

Khatkar MS, Thomson PC, Tammen I, Cavanagh JA, Nicholas FW, Raadsma HW.

Genet Sel Evol. 2006 Sep-Oct;38(5):463-77. Epub 2006 Sep 6.

33.

A first-generation metric linkage disequilibrium map of bovine chromosome 6.

Khatkar MS, Collins A, Cavanagh JA, Hawken RJ, Hobbs M, Zenger KR, Barris W, McClintock AE, Thomson PC, Nicholas FW, Raadsma HW.

Genetics. 2006 Sep;174(1):79-85. Epub 2006 Jul 2.

34.

Technical note: Whole-genome amplification of DNA extracted from cattle semen samples.

Hawken RJ, Cavanagh JA, Meadows JR, Khatkar MS, Husaini Y, Zenger KR, McClintock S, McClintock AE, Raadsma HW.

J Dairy Sci. 2006 Jun;89(6):2217-21.

35.

Quantitative trait loci mapping in dairy cattle: review and meta-analysis.

Khatkar MS, Thomson PC, Tammen I, Raadsma HW.

Genet Sel Evol. 2004 Mar-Apr;36(2):163-90. Review.

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