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Items: 49

1.

Influence of Surface Micro-Patterning and Hydrogel Coating on Colloidal Silica Fouling of Polyamide Thin-Film Composite Membranes.

ElSherbiny IMA, Khalil ASG, Ulbricht M.

Membranes (Basel). 2019 Jun 4;9(6). pii: E67. doi: 10.3390/membranes9060067.

2.

Designing Automated, High-throughput, Continuous Cell Growth Experiments Using eVOLVER.

Heins ZJ, Mancuso CP, Kiriakov S, Wong BG, Bashor CJ, Khalil AS.

J Vis Exp. 2019 May 19;(147). doi: 10.3791/59652.

PMID:
31157778
3.

Reply.

Solaiman KAM, El-Haig WM, Borʼi A, Khalil AS, Awad AMB, Al-Bialy HA, Ibrahim BM.

Cornea. 2019 May 9. doi: 10.1097/ICO.0000000000001980. [Epub ahead of print] No abstract available.

PMID:
31090591
4.

Sustained interleukin-10 delivery reduces inflammation and improves motor function after spinal cord injury.

Hellenbrand DJ, Reichl KA, Travis BJ, Filipp ME, Khalil AS, Pulito DJ, Gavigan AV, Maginot ER, Arnold MT, Adler AG, Murphy WL, Hanna AS.

J Neuroinflammation. 2019 Apr 30;16(1):93. doi: 10.1186/s12974-019-1479-3.

5.

A microparticle approach for non-viral gene delivery within 3D human mesenchymal stromal cell aggregates.

Khalil AS, Yu X, Dang PN, Alsberg E, Murphy WL.

Acta Biomater. 2019 Apr 18. pii: S1742-7061(19)30281-8. doi: 10.1016/j.actbio.2019.04.038. [Epub ahead of print]

PMID:
31004846
6.

Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies.

Bashor CJ, Patel N, Choubey S, Beyzavi A, Kondev J, Collins JJ, Khalil AS.

Science. 2019 May 10;364(6440):593-597. doi: 10.1126/science.aau8287. Epub 2019 Apr 18.

PMID:
31000590
7.

Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi.

Lee HH, Ostrov N, Wong BG, Gold MA, Khalil AS, Church GM.

Nat Microbiol. 2019 Apr 8. doi: 10.1038/s41564-019-0423-8. [Epub ahead of print]

PMID:
30962569
8.

Wet chemistry route for the decoration of carbon nanotubes with iron oxide nanoparticles for gas sensing.

Elnabawy HM, Casanova-Chafer J, Anis B, Fedawy M, Scardamaglia M, Bittencourt C, Khalil ASG, Llobet E, Vilanova X.

Beilstein J Nanotechnol. 2019 Jan 9;10:105-118. doi: 10.3762/bjnano.10.10. eCollection 2019.

9.

Secondary Intraocular Lens Implantation After Simultaneous Penetrating Keratoplasty and Cataract Extraction for Coexisting Corneal and Lens Opacities.

Solaiman KAM, El-Haig WM, Borʼi A, Khalil AS, Awad AMB, Al-Bialy HA, Ibrahim BM.

Cornea. 2019 Apr;38(4):397-402. doi: 10.1097/ICO.0000000000001861.

PMID:
30640247
10.

Engineering Epigenetic Regulation Using Synthetic Read-Write Modules.

Park M, Patel N, Keung AJ, Khalil AS.

Cell. 2019 Jan 10;176(1-2):227-238.e20. doi: 10.1016/j.cell.2018.11.002. Epub 2018 Dec 6.

PMID:
30528434
11.

Prognosis of Bell Palsy: A Clinical, Neurophysiological, and Ultrasound Study.

Zaki MA, Elkholy SH, Abokrysha NT, Khalil AS, Nawito AM, Magharef NW, Kishk NA.

J Clin Neurophysiol. 2018 Nov;35(6):468-473. doi: 10.1097/WNP.0000000000000509.

PMID:
30387782
12.

Modeling the impact of drug interactions on therapeutic selectivity.

Weinstein ZB, Kuru N, Kiriakov S, Palmer AC, Khalil AS, Clemons PA, Zaman MH, Roth FP, Cokol M.

Nat Commun. 2018 Aug 27;9(1):3452. doi: 10.1038/s41467-018-05954-3.

13.

Precise, automated control of conditions for high-throughput growth of yeast and bacteria with eVOLVER.

Wong BG, Mancuso CP, Kiriakov S, Bashor CJ, Khalil AS.

Nat Biotechnol. 2018 Aug;36(7):614-623. doi: 10.1038/nbt.4151. Epub 2018 Jun 11.

14.

Hsf1 Phosphorylation Generates Cell-to-Cell Variation in Hsp90 Levels and Promotes Phenotypic Plasticity.

Zheng X, Beyzavi A, Krakowiak J, Patel N, Khalil AS, Pincus D.

Cell Rep. 2018 Mar 20;22(12):3099-3106. doi: 10.1016/j.celrep.2018.02.083.

15.

Hsf1 and Hsp70 constitute a two-component feedback loop that regulates the yeast heat shock response.

Krakowiak J, Zheng X, Patel N, Feder ZA, Anandhakumar J, Valerius K, Gross DS, Khalil AS, Pincus D.

Elife. 2018 Feb 2;7. pii: e31668. doi: 10.7554/eLife.31668.

16.

Functionalization of microparticles with mineral coatings enhances non-viral transfection of primary human cells.

Khalil AS, Yu X, Xie AW, Fontana G, Umhoefer JM, Johnson HJ, Hookway TA, McDevitt TC, Murphy WL.

Sci Rep. 2017 Oct 27;7(1):14211. doi: 10.1038/s41598-017-14153-x.

17.

Controlled Self-assembly of Stem Cell Aggregates Instructs Pluripotency and Lineage Bias.

Xie AW, Binder BYK, Khalil AS, Schmitt SK, Johnson HJ, Zacharias NA, Murphy WL.

Sci Rep. 2017 Oct 25;7(1):14070. doi: 10.1038/s41598-017-14325-9.

18.

A Genetic Tool to Track Protein Aggregates and Control Prion Inheritance.

Newby GA, Kiriakov S, Hallacli E, Kayatekin C, Tsvetkov P, Mancuso CP, Bonner JM, Hesse WR, Chakrabortee S, Manogaran AL, Liebman SW, Lindquist S, Khalil AS.

Cell. 2017 Nov 2;171(4):966-979.e18. doi: 10.1016/j.cell.2017.09.041. Epub 2017 Oct 19.

19.

Interplay of Intermolecular and Intramolecular Hydrogen Bonds on Complex Formation: The 3-Aminopropanol-Water van der Waals Complex.

Khalil AS, Kelterer AM, Lavrich RJ.

J Phys Chem A. 2017 Sep 7;121(35):6646-6651. doi: 10.1021/acs.jpca.7b05745. Epub 2017 Aug 28.

PMID:
28796947
20.

Nanostructured Mineral Coatings Stabilize Proteins for Therapeutic Delivery.

Yu X, Biedrzycki AH, Khalil AS, Hess D, Umhoefer JM, Markel MD, Murphy WL.

Adv Mater. 2017 Sep;29(33). doi: 10.1002/adma.201701255. Epub 2017 Jul 4.

21.

Prospective isolation of NKX2-1-expressing human lung progenitors derived from pluripotent stem cells.

Hawkins F, Kramer P, Jacob A, Driver I, Thomas DC, McCauley KB, Skvir N, Crane AM, Kurmann AA, Hollenberg AN, Nguyen S, Wong BG, Khalil AS, Huang SX, Guttentag S, Rock JR, Shannon JM, Davis BR, Kotton DN.

J Clin Invest. 2017 Jun 1;127(6):2277-2294. doi: 10.1172/JCI89950. Epub 2017 May 2.

22.

Primary posterior capsulotomy in adults with posterior capsule opacification.

Al-Nashar HY, Khalil AS.

J Cataract Refract Surg. 2016 Nov;42(11):1615-1619. doi: 10.1016/j.jcrs.2016.08.026.

PMID:
27956288
23.

Dynamic control of Hsf1 during heat shock by a chaperone switch and phosphorylation.

Zheng X, Krakowiak J, Patel N, Beyzavi A, Ezike J, Khalil AS, Pincus D.

Elife. 2016 Nov 10;5. pii: e18638. doi: 10.7554/eLife.18638.

24.

The epigenome: the next substrate for engineering.

Park M, Keung AJ, Khalil AS.

Genome Biol. 2016 Aug 31;17(1):183. doi: 10.1186/s13059-016-1046-5. Review.

25.

Cellular Advantages to Signaling in a Digital World.

Mancuso CP, Kiriakov S, Khalil AS.

Cell Syst. 2016 Aug;3(2):114-115. doi: 10.1016/j.cels.2016.08.003.

26.

Biological Insights from Synthetic Biology.

Garcia-Ojalvo J, Khalil AS, McCarthy J.

Integr Biol (Camb). 2016 Apr 18;8(4):380-2. doi: 10.1039/c6ib90013e. Epub 2016 Apr 11. No abstract available.

PMID:
27064018
27.

MOLECULAR BIOLOGY. A unifying model of epigenetic regulation.

Keung AJ, Khalil AS.

Science. 2016 Feb 12;351(6274):661-2. doi: 10.1126/science.aaf1647. No abstract available.

28.

Enhancing the absorption capabilities of thin-film solar cells using sandwiched light trapping structures.

Abdellatif S, Kirah K, Ghannam R, Khalil AS, Anis W.

Appl Opt. 2015 Jun 10;54(17):5534-41. doi: 10.1364/AO.54.005534.

PMID:
26192857
29.

Antibiotic efficacy is linked to bacterial cellular respiration.

Lobritz MA, Belenky P, Porter CB, Gutierrez A, Yang JH, Schwarz EG, Dwyer DJ, Khalil AS, Collins JJ.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8173-80. doi: 10.1073/pnas.1509743112. Epub 2015 Jun 22.

30.

Chromatin regulation at the frontier of synthetic biology.

Keung AJ, Joung JK, Khalil AS, Collins JJ.

Nat Rev Genet. 2015 Mar;16(3):159-71. doi: 10.1038/nrg3900. Epub 2015 Feb 10. Review.

31.

How does the pathophysiological context influence delivery of bone growth factors?

Yu X, Suárez-González D, Khalil AS, Murphy WL.

Adv Drug Deliv Rev. 2015 Apr;84:68-84. doi: 10.1016/j.addr.2014.10.010. Epub 2014 Oct 17. Review.

32.

Using targeted chromatin regulators to engineer combinatorial and spatial transcriptional regulation.

Keung AJ, Bashor CJ, Kiriakov S, Collins JJ, Khalil AS.

Cell. 2014 Jul 3;158(1):110-20. doi: 10.1016/j.cell.2014.04.047.

33.

Simulating the dispersive behavior of semiconductors using the Lorentzian-Drude model for photovoltaic devices.

Abdellatif S, Ghannam R, Khalil AS.

Appl Opt. 2014 May 20;53(15):3294-300. doi: 10.1364/AO.53.003294.

PMID:
24922218
34.

Antibiotics induce redox-related physiological alterations as part of their lethality.

Dwyer DJ, Belenky PA, Yang JH, MacDonald IC, Martell JD, Takahashi N, Chan CT, Lobritz MA, Braff D, Schwarz EG, Ye JD, Pati M, Vercruysse M, Ralifo PS, Allison KR, Khalil AS, Ting AY, Walker GC, Collins JJ.

Proc Natl Acad Sci U S A. 2014 May 20;111(20):E2100-9. doi: 10.1073/pnas.1401876111. Epub 2014 May 6.

35.

Serum-dependence of affinity-mediated VEGF release from biomimetic microspheres.

Belair DG, Khalil AS, Miller MJ, Murphy WL.

Biomacromolecules. 2014 Jun 9;15(6):2038-48. doi: 10.1021/bm500177c. Epub 2014 May 12.

36.

Context clues: the importance of stem cell-material interactions.

Khalil AS, Xie AW, Murphy WL.

ACS Chem Biol. 2014 Jan 17;9(1):45-56. doi: 10.1021/cb400801m. Epub 2014 Jan 3. Review.

37.

Iterative plug-and-play methodology for constructing and modifying synthetic gene networks.

Litcofsky KD, Afeyan RB, Krom RJ, Khalil AS, Collins JJ.

Nat Methods. 2012 Nov;9(11):1077-80. doi: 10.1038/nmeth.2205. Epub 2012 Oct 7.

38.

A synthetic biology framework for programming eukaryotic transcription functions.

Khalil AS, Lu TK, Bashor CJ, Ramirez CL, Pyenson NC, Joung JK, Collins JJ.

Cell. 2012 Aug 3;150(3):647-58. doi: 10.1016/j.cell.2012.05.045.

39.

Signaling-mediated bacterial persister formation.

Vega NM, Allison KR, Khalil AS, Collins JJ.

Nat Chem Biol. 2012 Mar 18;8(5):431-3. doi: 10.1038/nchembio.915.

40.

Stable aqueous dispersions of ZnO nanoparticles for ink-jet printed gas sensors.

Khalil AS, Hartner S, Ali M, Wiggers H, Winterer M.

J Nanosci Nanotechnol. 2011 Dec;11(12):10839-43.

PMID:
22409008
41.

Synthesis and ink-jet printing of highly luminescing silicon nanoparticles for printable electronics.

Gupta A, Khalil AS, Offer M, Geller M, Winterer M, Lorke A, Wiggers H.

J Nanosci Nanotechnol. 2011 Jun;11(6):5028-33.

PMID:
21770139
42.

Synthetic biology: applications come of age.

Khalil AS, Collins JJ.

Nat Rev Genet. 2010 May;11(5):367-79. doi: 10.1038/nrg2775. Review.

43.

Next-generation synthetic gene networks.

Lu TK, Khalil AS, Collins JJ.

Nat Biotechnol. 2009 Dec;27(12):1139-50. doi: 10.1038/nbt.1591.

44.

Functional endothelialized microvascular networks with circular cross-sections in a tissue culture substrate.

Borenstein JT, Tupper MM, Mack PJ, Weinberg EJ, Khalil AS, Hsiao J, García-Cardeña G.

Biomed Microdevices. 2010 Feb;12(1):71-9. doi: 10.1007/s10544-009-9361-1.

PMID:
19787455
45.

Kinesin's cover-neck bundle folds forward to generate force.

Khalil AS, Appleyard DC, Labno AK, Georges A, Karplus M, Belcher AM, Hwang W, Lang MJ.

Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19247-52. doi: 10.1073/pnas.0805147105. Epub 2008 Dec 1.

46.

Diffusion in coiled pores - learning from microrelease and microsurgery.

Stempniewicz M, Khalil AS, Rohwerder M, Marlow F.

J Am Chem Soc. 2007 Aug 29;129(34):10561-6. Epub 2007 Aug 8.

PMID:
17685521
47.

Single M13 bacteriophage tethering and stretching.

Khalil AS, Ferrer JM, Brau RR, Kottmann ST, Noren CJ, Lang MJ, Belcher AM.

Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):4892-7. Epub 2007 Mar 13.

48.

A combined FEM/genetic algorithm for vascular soft tissue elasticity estimation.

Khalil AS, Bouma BE, Kaazempur Mofrad MR.

Cardiovasc Eng. 2006 Sep;6(3):93-102.

PMID:
16967325
49.

Tissue elasticity estimation with optical coherence elastography: toward mechanical characterization of in vivo soft tissue.

Khalil AS, Chan RC, Chau AH, Bouma BE, Mofrad MR.

Ann Biomed Eng. 2005 Nov;33(11):1631-9.

PMID:
16341928

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