Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 64

1.

Sustainable bioenergy for climate mitigation: developing drought-tolerant trees and grasses.

Taylor G, Donnison IS, Murphy-Bokern D, Morgante M, Bogeat-Triboulot MB, Bhalerao R, Hertzberg M, Polle A, Harfouche A, Alasia F, Petoussi V, Trebbi D, Schwarz K, Keurentjes JJB, Centritto M, Genty B, Flexas J, Grill E, Salvi S, Davies WJ.

Ann Bot. 2019 Oct 29;124(4):513-520. doi: 10.1093/aob/mcz146.

PMID:
31665761
2.

Accelerating Climate Resilient Plant Breeding by Applying Next-Generation Artificial Intelligence.

Harfouche AL, Jacobson DA, Kainer D, Romero JC, Harfouche AH, Scarascia Mugnozza G, Moshelion M, Tuskan GA, Keurentjes JJB, Altman A.

Trends Biotechnol. 2019 Nov;37(11):1217-1235. doi: 10.1016/j.tibtech.2019.05.007. Epub 2019 Jun 21. Review.

PMID:
31235329
3.

Publisher Correction: A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms.

Tsugawa H, Nakabayashi R, Mori T, Yamada Y, Takahashi M, Rai A, Sugiyama R, Yamamoto H, Nakaya T, Yamazaki M, Kooke R, Bac-Molenaar JA, Oztolan-Erol N, Keurentjes JJB, Arita M, Saito K.

Nat Methods. 2019 May;16(5):446. doi: 10.1038/s41592-019-0423-x.

PMID:
30992571
4.

A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters.

Witjes L, Kooke R, van der Hooft JJJ, de Vos RCH, Keurentjes JJB, Medema MH, Nijveen H.

BMC Res Notes. 2019 Apr 2;12(1):194. doi: 10.1186/s13104-019-4222-3.

5.

A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms.

Tsugawa H, Nakabayashi R, Mori T, Yamada Y, Takahashi M, Rai A, Sugiyama R, Yamamoto H, Nakaya T, Yamazaki M, Kooke R, Bac-Molenaar JA, Oztolan-Erol N, Keurentjes JJB, Arita M, Saito K.

Nat Methods. 2019 Apr;16(4):295-298. doi: 10.1038/s41592-019-0358-2. Epub 2019 Mar 28. Erratum in: Nat Methods. 2019 Apr 16;:.

PMID:
30923379
6.

Converging phenomics and genomics to study natural variation in plant photosynthetic efficiency.

van Bezouw RFHM, Keurentjes JJB, Harbinson J, Aarts MGM.

Plant J. 2019 Jan;97(1):112-133. doi: 10.1111/tpj.14190.

PMID:
30548574
7.

Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map.

Kooke R, Morgado L, Becker F, van Eekelen H, Hazarika R, Zheng Q, de Vos RCH, Johannes F, Keurentjes JJB.

Genome Res. 2019 Jan;29(1):96-106. doi: 10.1101/gr.232371.117. Epub 2018 Nov 30.

8.

Assessment of heterosis in two Arabidopsis thaliana common-reference mapping populations.

van Hulten MHA, Paulo MJ, Kruijer W, Blankestijn-De Vries H, Kemperman B, Becker FFM, Yang J, Lauss K, Stam ME, van Eeuwijk FA, Keurentjes JJB.

PLoS One. 2018 Oct 12;13(10):e0205564. doi: 10.1371/journal.pone.0205564. eCollection 2018.

9.

Parental DNA Methylation States Are Associated with Heterosis in Epigenetic Hybrids.

Lauss K, Wardenaar R, Oka R, van Hulten MHA, Guryev V, Keurentjes JJB, Stam M, Johannes F.

Plant Physiol. 2018 Feb;176(2):1627-1645. doi: 10.1104/pp.17.01054. Epub 2017 Dec 1.

10.

Genetic Components of Root Architecture Remodeling in Response to Salt Stress.

Julkowska MM, Koevoets IT, Mol S, Hoefsloot H, Feron R, Tester MA, Keurentjes JJB, Korte A, Haring MA, de Boer GJ, Testerink C.

Plant Cell. 2017 Dec;29(12):3198-3213. doi: 10.1105/tpc.16.00680. Epub 2017 Nov 7.

11.

QTLepi Mapping in Arabidopsis thaliana.

Lauss K, Keurentjes JJB.

Methods Mol Biol. 2018;1675:373-394. doi: 10.1007/978-1-4939-7318-7_22.

PMID:
29052203
12.

Genome-Wide Association Mapping Reveals That Specific and Pleiotropic Regulatory Mechanisms Fine-Tune Central Metabolism and Growth in Arabidopsis.

Fusari CM, Kooke R, Lauxmann MA, Annunziata MG, Enke B, Hoehne M, Krohn N, Becker FFM, Schlereth A, Sulpice R, Stitt M, Keurentjes JJB.

Plant Cell. 2017 Oct;29(10):2349-2373. doi: 10.1105/tpc.17.00232. Epub 2017 Sep 27.

13.

De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock.

Evangelistella C, Valentini A, Ludovisi R, Firrincieli A, Fabbrini F, Scalabrin S, Cattonaro F, Morgante M, Mugnozza GS, Keurentjes JJB, Harfouche A.

Biotechnol Biofuels. 2017 May 30;10:138. doi: 10.1186/s13068-017-0828-7. eCollection 2017.

14.

Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra.

Wildhagen H, Paul S, Allwright M, Smith HK, Malinowska M, Schnabel SK, Paulo MJ, Cattonaro F, Vendramin V, Scalabrin S, Janz D, Douthe C, Brendel O, Buré C, Cohen D, Hummel I, Le Thiec D, van Eeuwijk F, Keurentjes JJB, Flexas J, Morgante M, Robson P, Bogeat-Triboulot MB, Taylor G, Polle A.

Tree Physiol. 2018 Mar 1;38(3):320-339. doi: 10.1093/treephys/tpx054.

15.

Natural variation in life history strategy of Arabidopsis thaliana determines stress responses to drought and insects of different feeding guilds.

Davila Olivas NH, Frago E, Thoen MPM, Kloth KJ, Becker FFM, van Loon JJA, Gort G, Keurentjes JJB, van Heerwaarden J, Dicke M.

Mol Ecol. 2017 Jun;26(11):2959-2977. doi: 10.1111/mec.14100. Epub 2017 Apr 6.

16.

AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.

Nijveen H, Ligterink W, Keurentjes JJ, Loudet O, Long J, Sterken MG, Prins P, Hilhorst HW, de Ridder D, Kammenga JE, Snoek BL.

Plant J. 2017 Mar;89(6):1225-1235. doi: 10.1111/tpj.13457. Epub 2017 Feb 13.

17.

Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping.

Thoen MP, Davila Olivas NH, Kloth KJ, Coolen S, Huang PP, Aarts MG, Bac-Molenaar JA, Bakker J, Bouwmeester HJ, Broekgaarden C, Bucher J, Busscher-Lange J, Cheng X, Fradin EF, Jongsma MA, Julkowska MM, Keurentjes JJ, Ligterink W, Pieterse CM, Ruyter-Spira C, Smant G, Testerink C, Usadel B, van Loon JJ, van Pelt JA, van Schaik CC, van Wees SC, Visser RG, Voorrips R, Vosman B, Vreugdenhil D, Warmerdam S, Wiegers GL, van Heerwaarden J, Kruijer W, van Eeuwijk FA, Dicke M.

New Phytol. 2017 Feb;213(3):1346-1362. doi: 10.1111/nph.14220. Epub 2016 Oct 4.

18.

Biomass traits and candidate genes for bioenergy revealed through association genetics in coppiced European Populus nigra (L.).

Allwright MR, Payne A, Emiliani G, Milner S, Viger M, Rouse F, Keurentjes JJ, Bérard A, Wildhagen H, Faivre-Rampant P, Polle A, Morgante M, Taylor G.

Biotechnol Biofuels. 2016 Sep 8;9(1):195. doi: 10.1186/s13068-016-0603-1. eCollection 2016.

19.

Improved batch correction in untargeted MS-based metabolomics.

Wehrens R, Hageman JA, van Eeuwijk F, Kooke R, Flood PJ, Wijnker E, Keurentjes JJ, Lommen A, van Eekelen HD, Hall RD, Mumm R, de Vos RC.

Metabolomics. 2016;12:88. Epub 2016 Mar 18.

20.

Effects of Multi-Generational Stress Exposure and Offspring Environment on the Expression and Persistence of Transgenerational Effects in Arabidopsis thaliana.

Groot MP, Kooke R, Knoben N, Vergeer P, Keurentjes JJ, Ouborg NJ, Verhoeven KJ.

PLoS One. 2016 Mar 16;11(3):e0151566. doi: 10.1371/journal.pone.0151566. eCollection 2016.

21.

Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis.

Kooke R, Kruijer W, Bours R, Becker F, Kuhn A, van de Geest H, Buntjer J, Doeswijk T, Guerra J, Bouwmeester H, Vreugdenhil D, Keurentjes JJ.

Plant Physiol. 2016 Apr;170(4):2187-203. doi: 10.1104/pp.15.00997. Epub 2016 Feb 11.

22.

Novel Genes Affecting the Interaction between the Cabbage Whitefly and Arabidopsis Uncovered by Genome-Wide Association Mapping.

Broekgaarden C, Bucher J, Bac-Molenaar J, Keurentjes JJ, Kruijer W, Voorrips RE, Vosman B.

PLoS One. 2015 Dec 23;10(12):e0145124. doi: 10.1371/journal.pone.0145124. eCollection 2015.

23.

GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.

Bac-Molenaar JA, Fradin EF, Rienstra JA, Vreugdenhil D, Keurentjes JJ.

PLoS One. 2015 Nov 20;10(11):e0143212. doi: 10.1371/journal.pone.0143212. eCollection 2015.

24.

Epigenetic variation contributes to environmental adaptation of Arabidopsis thaliana.

Kooke R, Keurentjes JJ.

Plant Signal Behav. 2015;10(9):e1057368. doi: 10.1080/15592324.2015.1057368.

25.

Genome-Wide Association Mapping of Fertility Reduction upon Heat Stress Reveals Developmental Stage-Specific QTLs in Arabidopsis thaliana.

Bac-Molenaar JA, Fradin EF, Becker FF, Rienstra JA, van der Schoot J, Vreugdenhil D, Keurentjes JJ.

Plant Cell. 2015 Jul;27(7):1857-74. doi: 10.1105/tpc.15.00248. Epub 2015 Jul 10.

26.

Genome-wide association mapping of time-dependent growth responses to moderate drought stress in Arabidopsis.

Bac-Molenaar JA, Granier C, Keurentjes JJ, Vreugdenhil D.

Plant Cell Environ. 2016 Jan;39(1):88-102. doi: 10.1111/pce.12595. Epub 2015 Nov 9.

27.

Genome-wide association mapping of growth dynamics detects time-specific and general quantitative trait loci.

Bac-Molenaar JA, Vreugdenhil D, Granier C, Keurentjes JJ.

J Exp Bot. 2015 Sep;66(18):5567-80. doi: 10.1093/jxb/erv176. Epub 2015 Apr 28.

28.

Epigenetic basis of morphological variation and phenotypic plasticity in Arabidopsis thaliana.

Kooke R, Johannes F, Wardenaar R, Becker F, Etcheverry M, Colot V, Vreugdenhil D, Keurentjes JJ.

Plant Cell. 2015 Feb;27(2):337-48. doi: 10.1105/tpc.114.133025. Epub 2015 Feb 10.

29.

Marker-based estimation of heritability in immortal populations.

Kruijer W, Boer MP, Malosetti M, Flood PJ, Engel B, Kooke R, Keurentjes JJ, van Eeuwijk FA.

Genetics. 2015 Feb;199(2):379-98. doi: 10.1534/genetics.114.167916. Epub 2014 Dec 19. Erratum in: Genetics. 2015 May;200(1):385.

30.

Genetic resources for quantitative trait analysis: novelty and efficiency in design from an Arabidopsis perspective.

Wijnen CL, Keurentjes JJ.

Curr Opin Plant Biol. 2014 Apr;18:103-9. doi: 10.1016/j.pbi.2014.02.011. Epub 2014 Mar 20. Review.

PMID:
24657834
31.

Hybrid recreation by reverse breeding in Arabidopsis thaliana.

Wijnker E, Deurhof L, van de Belt J, de Snoo CB, Blankestijn H, Becker F, Ravi M, Chan SW, van Dun K, Lelivelt CL, de Jong H, Dirks R, Keurentjes JJ.

Nat Protoc. 2014 Apr;9(4):761-72. doi: 10.1038/nprot.2014.049. Epub 2014 Mar 6.

PMID:
24603935
32.

The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana.

Wijnker E, Velikkakam James G, Ding J, Becker F, Klasen JR, Rawat V, Rowan BA, de Jong DF, de Snoo CB, Zapata L, Huettel B, de Jong H, Ossowski S, Weigel D, Koornneef M, Keurentjes JJ, Schneeberger K.

Elife. 2013 Dec 17;2:e01426. doi: 10.7554/eLife.01426.

33.

Exploiting natural variation in Arabidopsis.

Molenaar JA, Keurentjes JJ.

Methods Mol Biol. 2014;1062:139-53. doi: 10.1007/978-1-62703-580-4_6.

PMID:
24057363
34.

Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley.

Barboza L, Effgen S, Alonso-Blanco C, Kooke R, Keurentjes JJ, Koornneef M, Alcázar R.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15818-23. doi: 10.1073/pnas.1314979110. Epub 2013 Sep 10.

35.

Predictive modelling of complex agronomic and biological systems.

Keurentjes JJ, Molenaar J, Zwaan BJ.

Plant Cell Environ. 2013 Sep;36(9):1700-10. doi: 10.1111/pce.12156. Epub 2013 Jul 4. Review. Erratum in: Plant Cell Environ. 2013 Oct;36(10):1910.

36.

Identifying genotype-by-environment interactions in the metabolism of germinating arabidopsis seeds using generalized genetical genomics.

Joosen RV, Arends D, Li Y, Willems LA, Keurentjes JJ, Ligterink W, Jansen RC, Hilhorst HW.

Plant Physiol. 2013 Jun;162(2):553-66. doi: 10.1104/pp.113.216176. Epub 2013 Apr 19.

37.

Socio-economic position has no effect on improvement in health-related quality of life and patient satisfaction in total hip and knee replacement: a cohort study.

Keurentjes JC, Blane D, Bartley M, Keurentjes JJ, Fiocco M, Nelissen RG.

PLoS One. 2013;8(3):e56785. doi: 10.1371/journal.pone.0056785. Epub 2013 Mar 8.

38.

Genetic analysis of metabolome-phenotype interactions: from model to crop species.

Carreno-Quintero N, Bouwmeester HJ, Keurentjes JJ.

Trends Genet. 2013 Jan;29(1):41-50. doi: 10.1016/j.tig.2012.09.006. Epub 2012 Oct 16. Review.

PMID:
23084137
39.

Genetic analysis of morphological traits in a new, versatile, rapid-cycling Brassica rapa recombinant inbred line population.

Bagheri H, El-Soda M, van Oorschot I, Hanhart C, Bonnema G, Jansen-van den Bosch T, Mank R, Keurentjes JJ, Meng L, Wu J, Koornneef M, Aarts MG.

Front Plant Sci. 2012 Aug 16;3:183. doi: 10.3389/fpls.2012.00183. eCollection 2012.

40.

Backcross populations and near isogenic lines.

Kooke R, Wijnker E, Keurentjes JJ.

Methods Mol Biol. 2012;871:3-16. doi: 10.1007/978-1-61779-785-9_1.

PMID:
22565829
41.

Reverse breeding in Arabidopsis thaliana generates homozygous parental lines from a heterozygous plant.

Wijnker E, van Dun K, de Snoo CB, Lelivelt CL, Keurentjes JJ, Naharudin NS, Ravi M, Chan SW, de Jong H, Dirks R.

Nat Genet. 2012 Mar 11;44(4):467-70. doi: 10.1038/ng.2203.

PMID:
22406643
42.

Untargeted metabolic quantitative trait loci analyses reveal a relationship between primary metabolism and potato tuber quality.

Carreno-Quintero N, Acharjee A, Maliepaard C, Bachem CW, Mumm R, Bouwmeester H, Visser RG, Keurentjes JJ.

Plant Physiol. 2012 Mar;158(3):1306-18. doi: 10.1104/pp.111.188441. Epub 2012 Jan 5.

43.

Multi-dimensional regulation of metabolic networks shaping plant development and performance.

Kooke R, Keurentjes JJ.

J Exp Bot. 2012 May;63(9):3353-65. doi: 10.1093/jxb/err373. Epub 2011 Dec 3. Review.

PMID:
22140247
44.

Metabolomics: the chemistry between ecology and genetics.

Macel M, Van Dam NM, Keurentjes JJ.

Mol Ecol Resour. 2010 Jul;10(4):583-93. doi: 10.1111/j.1755-0998.2010.02854.x. Epub 2010 Mar 30.

PMID:
21565063
45.

Redefining plant systems biology: from cell to ecosystem.

Keurentjes JJ, Angenent GC, Dicke M, Dos Santos VA, Molenaar J, van der Putten WH, de Ruiter PC, Struik PC, Thomma BP.

Trends Plant Sci. 2011 Apr;16(4):183-90. doi: 10.1016/j.tplants.2010.12.002. Epub 2011 Jan 5.

PMID:
21215676
46.

Regulatory network identification by genetical genomics: signaling downstream of the Arabidopsis receptor-like kinase ERECTA.

Terpstra IR, Snoek LB, Keurentjes JJ, Peeters AJ, van den Ackerveken G.

Plant Physiol. 2010 Nov;154(3):1067-78. doi: 10.1104/pp.110.159996. Epub 2010 Sep 10.

47.

Advances in genetical genomics of plants.

Joosen RV, Ligterink W, Hilhorst HW, Keurentjes JJ.

Curr Genomics. 2009 Dec;10(8):540-9. doi: 10.2174/138920209789503914.

48.

The role of natural variation in dissecting genetic regulation of primary metabolism.

Keurentjes JJ, Sulpice R.

Plant Signal Behav. 2009 Mar;4(3):244-6. No abstract available.

49.

What has natural variation taught us about plant development, physiology, and adaptation?

Alonso-Blanco C, Aarts MG, Bentsink L, Keurentjes JJ, Reymond M, Vreugdenhil D, Koornneef M.

Plant Cell. 2009 Jul;21(7):1877-96. doi: 10.1105/tpc.109.068114. Epub 2009 Jul 2. Review.

50.

Starch as a major integrator in the regulation of plant growth.

Sulpice R, Pyl ET, Ishihara H, Trenkamp S, Steinfath M, Witucka-Wall H, Gibon Y, Usadel B, Poree F, Piques MC, Von Korff M, Steinhauser MC, Keurentjes JJ, Guenther M, Hoehne M, Selbig J, Fernie AR, Altmann T, Stitt M.

Proc Natl Acad Sci U S A. 2009 Jun 23;106(25):10348-53. doi: 10.1073/pnas.0903478106. Epub 2009 Jun 8.

Supplemental Content

Loading ...
Support Center