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Tdrd6a Regulates the Aggregation of Buc into Functional Subcellular Compartments that Drive Germ Cell Specification.

Roovers EF, Kaaij LJT, Redl S, Bronkhorst AW, Wiebrands K, de Jesus Domingues AM, Huang HY, Han CT, Riemer S, Dosch R, Salvenmoser W, Grün D, Butter F, van Oudenaarden A, Ketting RF.

Dev Cell. 2018 Aug 6;46(3):285-301.e9. doi: 10.1016/j.devcel.2018.07.009.


Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development.

Kaaij LJT, van der Weide RH, Ketting RF, de Wit E.

Cell Rep. 2018 Jul 3;24(1):1-10.e4. doi: 10.1016/j.celrep.2018.06.003.


GTSF-1 is required for formation of a functional RNA-dependent RNA Polymerase complex in Caenorhabditis elegans.

Almeida MV, Dietz S, Redl S, Karaulanov E, Hildebrandt A, Renz C, Ulrich HD, König J, Butter F, Ketting RF.

EMBO J. 2018 Jun 15;37(12). pii: e99325. doi: 10.15252/embj.201899325. Epub 2018 May 16.


Trimming it short: PNLDC1 is required for piRNA maturation during mouse spermatogenesis.

Bronkhorst AW, Ketting RF.

EMBO Rep. 2018 Mar;19(3). pii: e45824. doi: 10.15252/embr.201845824. Epub 2018 Feb 19. No abstract available.


Characterization of genetic loss-of-function of Fus in zebrafish.

Lebedeva S, de Jesus Domingues AM, Butter F, Ketting RF.

RNA Biol. 2017 Jan 2;14(1):29-35. doi: 10.1080/15476286.2016.1256532. Epub 2016 Nov 29.


Enhancers reside in a unique epigenetic environment during early zebrafish development.

Kaaij LJ, Mokry M, Zhou M, Musheev M, Geeven G, Melquiond AS, de Jesus Domingues AM, de Laat W, Niehrs C, Smith AD, Ketting RF.

Genome Biol. 2016 Jul 5;17(1):146. doi: 10.1186/s13059-016-1013-1.


Normal formation of a vertebrate body plan and loss of tissue maintenance in the absence of ezh2.

San B, Chrispijn ND, Wittkopp N, van Heeringen SJ, Lagendijk AK, Aben M, Bakkers J, Ketting RF, Kamminga LM.

Sci Rep. 2016 May 5;6:24658. doi: 10.1038/srep24658.


Substrate requirements for let-7 function in the developing zebrafish embryo.

Kloosterman WP, Wienholds E, Ketting RF, Plasterk RH.

Nucleic Acids Res. 2016 Jul 8;44(12):5993. doi: 10.1093/nar/gkw173. Epub 2016 Mar 11. No abstract available.


Superresolution imaging reveals structurally distinct periodic patterns of chromatin along pachytene chromosomes.

Prakash K, Fournier D, Redl S, Best G, Borsos M, Tiwari VK, Tachibana-Konwalski K, Ketting RF, Parekh SH, Cremer C, Birk UJ.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14635-40. doi: 10.1073/pnas.1516928112. Epub 2015 Nov 11.


Piwi proteins and piRNAs in mammalian oocytes and early embryos: From sample to sequence.

Rosenkranz D, Han CT, Roovers EF, Zischler H, Ketting RF.

Genom Data. 2015 Jul 10;5:309-13. doi: 10.1016/j.gdata.2015.06.026. eCollection 2015 Sep.


Maternal piRNAs Are Essential for Germline Development following De Novo Establishment of Endo-siRNAs in Caenorhabditis elegans.

de Albuquerque BF, Placentino M, Ketting RF.

Dev Cell. 2015 Aug 24;34(4):448-56. doi: 10.1016/j.devcel.2015.07.010. Epub 2015 Aug 13.


piRNAs from Pig Testis Provide Evidence for a Conserved Role of the Piwi Pathway in Post-Transcriptional Gene Regulation in Mammals.

Gebert D, Ketting RF, Zischler H, Rosenkranz D.

PLoS One. 2015 May 7;10(5):e0124860. doi: 10.1371/journal.pone.0124860. eCollection 2015.


Piwi proteins and piRNAs in mammalian oocytes and early embryos.

Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van der Westerlaken LA, Zischler H, Butter F, Roelen BA, Ketting RF.

Cell Rep. 2015 Mar 31;10(12):2069-82. doi: 10.1016/j.celrep.2015.02.062. Epub 2015 Mar 26.


Tupaia small RNAs provide insights into function and evolution of RNAi-based transposon defense in mammals.

Rosenkranz D, Rudloff S, Bastuck K, Ketting RF, Zischler H.

RNA. 2015 May;21(5):911-22. doi: 10.1261/rna.048603.114. Epub 2015 Mar 23.


The evolutionary journey of Argonaute proteins.

Swarts DC, Makarova K, Wang Y, Nakanishi K, Ketting RF, Koonin EV, Patel DJ, van der Oost J.

Nat Struct Mol Biol. 2014 Sep;21(9):743-53. doi: 10.1038/nsmb.2879. Review.


PID-1 is a novel factor that operates during 21U-RNA biogenesis in Caenorhabditis elegans.

de Albuquerque BF, Luteijn MJ, Cordeiro Rodrigues RJ, van Bergeijk P, Waaijers S, Kaaij LJ, Klein H, Boxem M, Ketting RF.

Genes Dev. 2014 Apr 1;28(7):683-8. doi: 10.1101/gad.238220.114.


MUT-14 and SMUT-1 DEAD box RNA helicases have overlapping roles in germline RNAi and endogenous siRNA formation.

Phillips CM, Montgomery BE, Breen PC, Roovers EF, Rim YS, Ohsumi TK, Newman MA, van Wolfswinkel JC, Ketting RF, Ruvkun G, Montgomery TA.

Curr Biol. 2014 Apr 14;24(8):839-44. doi: 10.1016/j.cub.2014.02.060. Epub 2014 Mar 27.


Profiling of RNA modifications by multiplexed stable isotope labelling.

Kellner S, Neumann J, Rosenkranz D, Lebedeva S, Ketting RF, Zischler H, Schneider D, Helm M.

Chem Commun (Camb). 2014 Apr 4;50(26):3516-8. doi: 10.1039/c3cc49114e. Epub 2014 Feb 24.


Is this mine? small RNAs help to decide.

de Albuquerque BF, Ketting RF.

Dev Cell. 2013 Dec 23;27(6):599-601. doi: 10.1016/j.devcel.2013.12.005.


Isolation of zebrafish gonads for RNA isolation.

Huang HY, Ketting RF.

Methods Mol Biol. 2014;1093:183-94. doi: 10.1007/978-1-62703-694-8_15.


PIWI-interacting RNAs: from generation to transgenerational epigenetics.

Luteijn MJ, Ketting RF.

Nat Rev Genet. 2013 Aug;14(8):523-34. doi: 10.1038/nrg3495. Epub 2013 Jun 25. Review.


DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus.

Kaaij LT, van de Wetering M, Fang F, Decato B, Molaro A, van de Werken HJ, van Es JH, Schuijers J, de Wit E, de Laat W, Hannon GJ, Clevers HC, Smith AD, Ketting RF.

Genome Biol. 2013 May 28;14(5):R50. doi: 10.1186/gb-2013-14-5-r50.


Mutations in LRRC50 predispose zebrafish and humans to seminomas.

Basten SG, Davis EE, Gillis AJ, van Rooijen E, Stoop H, Babala N, Logister I, Heath ZG, Jonges TN, Katsanis N, Voest EE, van Eeden FJ, Medema RH, Ketting RF, Schulte-Merker S, Looijenga LH, Giles RH.

PLoS Genet. 2013 Apr;9(4):e1003384. doi: 10.1371/journal.pgen.1003384. Epub 2013 Apr 11.


piRNA dynamics in divergent zebrafish strains reveal long-lasting maternal influence on zygotic piRNA profiles.

Kaaij LJ, Hoogstrate SW, Berezikov E, Ketting RF.

RNA. 2013 Mar;19(3):345-56. doi: 10.1261/rna.036400.112. Epub 2013 Jan 18.


Extremely stable Piwi-induced gene silencing in Caenorhabditis elegans.

Luteijn MJ, van Bergeijk P, Kaaij LJ, Almeida MV, Roovers EF, Berezikov E, Ketting RF.

EMBO J. 2012 Aug 15;31(16):3422-30. doi: 10.1038/emboj.2012.213. Epub 2012 Jul 31.


Differential impact of the HEN1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans.

Kamminga LM, van Wolfswinkel JC, Luteijn MJ, Kaaij LJ, Bagijn MP, Sapetschnig A, Miska EA, Berezikov E, Ketting RF.

PLoS Genet. 2012;8(7):e1002702. doi: 10.1371/journal.pgen.1002702. Epub 2012 Jul 19.


microRNA Biogenesis and Function : An overview.

Ketting RF.

Adv Exp Med Biol. 2011;700:1-14. doi: 10.1007/978-1-4419-7823-3_1. Review.


Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish.

Huang HY, Houwing S, Kaaij LJ, Meppelink A, Redl S, Gauci S, Vos H, Draper BW, Moens CB, Burgering BM, Ladurner P, Krijgsveld J, Berezikov E, Ketting RF.

EMBO J. 2011 Jul 8;30(16):3298-308. doi: 10.1038/emboj.2011.228.


RNAi genes pave their own way.

Kamminga LM, Ketting RF.

Genes Dev. 2011 Mar 15;25(6):529-33. doi: 10.1101/gad.2038611.


The many faces of RNAi.

Ketting RF.

Dev Cell. 2011 Feb 15;20(2):148-61. doi: 10.1016/j.devcel.2011.01.012. Review.


Hen1 is required for oocyte development and piRNA stability in zebrafish.

Kamminga LM, Luteijn MJ, den Broeder MJ, Redl S, Kaaij LJ, Roovers EF, Ladurner P, Berezikov E, Ketting RF.

EMBO J. 2010 Nov 3;29(21):3688-700. doi: 10.1038/emboj.2010.233. Epub 2010 Sep 21. Erratum in: EMBO J. 2012 Jan 4;31(1):248.


The role of small non-coding RNAs in genome stability and chromatin organization.

van Wolfswinkel JC, Ketting RF.

J Cell Sci. 2010 Jun 1;123(Pt 11):1825-39. doi: 10.1242/jcs.061713. Review.


MicroRNA-directed siRNA biogenesis in Caenorhabditis elegans.

Corrêa RL, Steiner FA, Berezikov E, Ketting RF.

PLoS Genet. 2010 Apr 8;6(4):e1000903. doi: 10.1371/journal.pgen.1000903.


Dcr1 tracked down.

Kaaij LJ, Ketting RF.

Dev Cell. 2010 Jan 19;18(1):6-7. doi: 10.1016/j.devcel.2010.01.001.


MicroRNA biogenesis and function. An overview.

Ketting RF.

Adv Exp Med Biol. 2010;700:1-14. Review.


Generation and characterization of FMR1 knockout zebrafish.

den Broeder MJ, van der Linde H, Brouwer JR, Oostra BA, Willemsen R, Ketting RF.

PLoS One. 2009 Nov 19;4(11):e7910. doi: 10.1371/journal.pone.0007910.


CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs.

van Wolfswinkel JC, Claycomb JM, Batista PJ, Mello CC, Berezikov E, Ketting RF.

Cell. 2009 Oct 2;139(1):135-48. doi: 10.1016/j.cell.2009.09.012.


The Argonaute CSR-1 and its 22G-RNA cofactors are required for holocentric chromosome segregation.

Claycomb JM, Batista PJ, Pang KM, Gu W, Vasale JJ, van Wolfswinkel JC, Chaves DA, Shirayama M, Mitani S, Ketting RF, Conte D Jr, Mello CC.

Cell. 2009 Oct 2;139(1):123-34. doi: 10.1016/j.cell.2009.09.014.


Semiconserved regulation of mesendoderm differentiation by microRNAs.

Ketting RF.

Dev Cell. 2009 Apr;16(4):487-8. doi: 10.1016/j.devcel.2009.03.014.


RDE-1 slicer activity is required only for passenger-strand cleavage during RNAi in Caenorhabditis elegans.

Steiner FA, Okihara KL, Hoogstrate SW, Sijen T, Ketting RF.

Nat Struct Mol Biol. 2009 Feb;16(2):207-11. doi: 10.1038/nsmb.1541. Epub 2009 Jan 18.


Zili is required for germ cell differentiation and meiosis in zebrafish.

Houwing S, Berezikov E, Ketting RF.

EMBO J. 2008 Oct 22;27(20):2702-11. doi: 10.1038/emboj.2008.204. Epub 2008 Oct 2.


Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline.

Das PP, Bagijn MP, Goldstein LD, Woolford JR, Lehrbach NJ, Sapetschnig A, Buhecha HR, Gilchrist MJ, Howe KL, Stark R, Matthews N, Berezikov E, Ketting RF, Tavaré S, Miska EA.

Mol Cell. 2008 Jul 11;31(1):79-90. doi: 10.1016/j.molcel.2008.06.003. Epub 2008 Jun 19.


A dead end for microRNAs.

Ketting RF.

Cell. 2007 Dec 28;131(7):1226-7.


Structural features of small RNA precursors determine Argonaute loading in Caenorhabditis elegans.

Steiner FA, Hoogstrate SW, Okihara KL, Thijssen KL, Ketting RF, Plasterk RH, Sijen T.

Nat Struct Mol Biol. 2007 Oct;14(10):927-33. Epub 2007 Sep 23.


Targeted inhibition of miRNA maturation with morpholinos reveals a role for miR-375 in pancreatic islet development.

Kloosterman WP, Lagendijk AK, Ketting RF, Moulton JD, Plasterk RH.

PLoS Biol. 2007 Aug;5(8):e203.


A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish.

Houwing S, Kamminga LM, Berezikov E, Cronembold D, Girard A, van den Elst H, Filippov DV, Blaser H, Raz E, Moens CB, Plasterk RH, Hannon GJ, Draper BW, Ketting RF.

Cell. 2007 Apr 6;129(1):69-82.


The Caenorhabditis elegans Argonautes ALG-1 and ALG-2: almost identical yet different.

Tops BB, Plasterk RH, Ketting RF.

Cold Spring Harb Symp Quant Biol. 2006;71:189-94.


Partners in dicing.

Ketting RF.

Genome Biol. 2006;7(3):210. Epub 2006 Mar 31. Review.


Isolation of RNA from C. elegans.

Ketting RF, Tijsterman M, Plasterk RH.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4321. doi: 10.1101/pdb.prot4321. No abstract available.


Detection of si/miRNA in C. elegans by Northern Blot.

Ketting RF, Tijsterman M, Plasterk RH.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4320. doi: 10.1101/pdb.prot4320. No abstract available.


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