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Items: 31

1.

Testing independence between two random sets for the analysis of colocalization in bio-imaging.

Lavancier F, Pécot T, Zengzhen L, Kervrann C.

Biometrics. 2019 Jul 4. doi: 10.1111/biom.13115. [Epub ahead of print]

PMID:
31271216
2.

A Sequential Algorithm to Detect Diffusion Switching along Intracellular Particle Trajectories.

Briane V, Vimond M, Valades Cruz CA, Salomon A, Wunder C, Kervrann C.

Bioinformatics. 2019 Jun 19. pii: btz489. doi: 10.1093/bioinformatics/btz489. [Epub ahead of print]

PMID:
31214689
3.

An overview of diffusion models for intracellular dynamics analysis.

Briane V, Vimond M, Kervrann C.

Brief Bioinform. 2019 Jun 14. pii: bbz052. doi: 10.1093/bib/bbz052. [Epub ahead of print]

PMID:
31204428
4.

A quantitative approach for analyzing the spatio-temporal distribution of 3D intracellular events in fluorescence microscopy.

Pécot T, Zengzhen L, Boulanger J, Salamero J, Kervrann C.

Elife. 2018 Aug 9;7. pii: e32311. doi: 10.7554/eLife.32311.

5.

Statistical analysis of particle trajectories in living cells.

Briane V, Kervrann C, Vimond M.

Phys Rev E. 2018 Jun;97(6-1):062121. doi: 10.1103/PhysRevE.97.062121.

PMID:
30011544
6.

ATMAD: robust image analysis for Automatic Tissue MicroArray De-arraying.

Nguyen HN, Paveau V, Cauchois C, Kervrann C.

BMC Bioinformatics. 2018 Apr 19;19(1):148. doi: 10.1186/s12859-018-2111-8.

7.

Piecewise-Stationary Motion Modeling and Iterative Smoothing to Track Heterogeneous Particle Motions in Dense Environments.

Roudot P, Liya Ding, Jaqaman K, Kervrann C, Danuser G.

IEEE Trans Image Process. 2017 Nov;26(11):5395-5410. doi: 10.1109/TIP.2017.2707803.

8.

An extended model of vesicle fusion at the plasma membrane to estimate protein lateral diffusion from TIRF microscopy images.

Basset A, Bouthemy P, Boulanger J, Waharte F, Salamero J, Kervrann C.

BMC Bioinformatics. 2017 Jul 24;18(1):352. doi: 10.1186/s12859-017-1765-y.

9.

Lifetime estimation of moving subcellular objects in frequency-domain fluorescence lifetime imaging microscopy.

Roudot P, Kervrann C, Blouin CM, Waharte F.

J Opt Soc Am A Opt Image Sci Vis. 2015 Oct 1;32(10):1821-35. doi: 10.1364/JOSAA.32.001821.

PMID:
26479936
10.

Adaptive Spot Detection With Optimal Scale Selection in Fluorescence Microscopy Images.

Basset A, Boulanger J, Salamero J, Bouthemy P, Kervrann C.

IEEE Trans Image Process. 2015 Nov;24(11):4512-27. doi: 10.1109/TIP.2015.2450996.

PMID:
26353357
11.

Background fluorescence estimation and vesicle segmentation in live cell imaging with conditional random fields.

Pécot T, Bouthemy P, Boulanger J, Chessel A, Bardin S, Salamero J, Kervrann C.

IEEE Trans Image Process. 2015 Feb;24(2):667-80. doi: 10.1109/TIP.2014.2380178. Epub 2014 Dec 12.

PMID:
25531952
12.

Objective comparison of particle tracking methods.

Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jaldén J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solórzano C, Olivo-Marin JC, Meijering E.

Nat Methods. 2014 Mar;11(3):281-9. doi: 10.1038/nmeth.2808. Epub 2014 Jan 19.

13.

Single versus dual-axis cryo-electron tomography of microtubules assembled in vitro: limits and perspectives.

Guesdon A, Blestel S, Kervrann C, Chrétien D.

J Struct Biol. 2013 Feb;181(2):169-78. doi: 10.1016/j.jsb.2012.11.004. Epub 2012 Nov 22.

PMID:
23178680
14.

Confinement induces actin flow in a meiotic cytoplasm.

Pinot M, Steiner V, Dehapiot B, Yoo BK, Chesnel F, Blanchoin L, Kervrann C, Gueroui Z.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11705-10. doi: 10.1073/pnas.1121583109. Epub 2012 Jul 2.

15.

A Rab11A/myosin Vb/Rab11-FIP2 complex frames two late recycling steps of langerin from the ERC to the plasma membrane.

Gidon A, Bardin S, Cinquin B, Boulanger J, Waharte F, Heliot L, de la Salle H, Hanau D, Kervrann C, Goud B, Salamero J.

Traffic. 2012 Jun;13(6):815-33. doi: 10.1111/j.1600-0854.2012.01354.x. Epub 2012 Apr 22.

16.

Cryo-electron tomography of microtubules assembled in vitro from purified components.

Coquelle FM, Blestel S, Heichette C, Arnal I, Kervrann C, Chrétien D.

Methods Mol Biol. 2011;777:193-208. doi: 10.1007/978-1-61779-252-6_14.

PMID:
21773930
17.

Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP- histones.

Matsuda A, Shao L, Boulanger J, Kervrann C, Carlton PM, Kner P, Agard D, Sedat JW.

PLoS One. 2010 Sep 15;5(9):e12768. doi: 10.1371/journal.pone.0012768.

18.

Fast live simultaneous multiwavelength four-dimensional optical microscopy.

Carlton PM, Boulanger J, Kervrann C, Sibarita JB, Salamero J, Gordon-Messer S, Bressan D, Haber JE, Haase S, Shao L, Winoto L, Matsuda A, Kner P, Uzawa S, Gustafsson M, Kam Z, Agard DA, Sedat JW.

Proc Natl Acad Sci U S A. 2010 Sep 14;107(37):16016-22. doi: 10.1073/pnas.1004037107. Epub 2010 Aug 12.

19.

Patch-based nonlocal functional for denoising fluorescence microscopy image sequences.

Boulanger J, Kervrann C, Bouthemy P, Elbau P, Sibarita JB, Salamero J.

IEEE Trans Med Imaging. 2010 Feb;29(2):442-54. doi: 10.1109/TMI.2009.2033991. Epub 2009 Nov 6.

PMID:
19900849
20.

Nonlocal means-based speckle filtering for ultrasound images.

Coupé P, Hellier P, Kervrann C, Barillot C.

IEEE Trans Image Process. 2009 Oct;18(10):2221-9. doi: 10.1109/TIP.2009.2024064. Epub 2009 May 27.

21.

Patch-based Markov models for event detection in fluorescence bioimaging.

Pécot T, Kervrann C, Bardin S, Goud B, Salamero J.

Med Image Comput Comput Assist Interv. 2008;11(Pt 2):95-103.

PMID:
18982594
22.

A simulation and estimation framework for intracellular dynamics and trafficking in video-microscopy and fluorescence imagery.

Boulanger J, Kervrann C, Bouthemy P.

Med Image Anal. 2009 Feb;13(1):132-42. doi: 10.1016/j.media.2008.06.017. Epub 2008 Jul 17.

PMID:
18723385
23.

3D wavelet subbands mixing for image denoising.

Coupé P, Hellier P, Prima S, Kervrann C, Barillot C.

Int J Biomed Imaging. 2008;2008:590183. doi: 10.1155/2008/590183.

24.

An optimized blockwise nonlocal means denoising filter for 3-D magnetic resonance images.

Coupe P, Yger P, Prima S, Hellier P, Kervrann C, Barillot C.

IEEE Trans Med Imaging. 2008 Apr;27(4):425-41. doi: 10.1109/TMI.2007.906087.

25.

Statistical deformable model-based segmentation of image motion.

Kervrann C, Heitz F.

IEEE Trans Image Process. 1999;8(4):583-8. doi: 10.1109/83.753745.

PMID:
18262901
26.

Space-time adaptation for patch-based image sequence restoration.

Boulanger J, Kervrann C, Bouthemy P.

IEEE Trans Pattern Anal Mach Intell. 2007 Jun;29(6):1096-102.

PMID:
17431307
27.

Optimal spatial adaptation for patch-based image denoising.

Kervrann C, Boulanger J.

IEEE Trans Image Process. 2006 Oct;15(10):2866-78.

PMID:
17022255
28.

Adaptive spatio-temporal restoration for 4D fluorescence microscopic imaging.

Boulanger J, Kervrann C, Bouthemy P.

Med Image Comput Comput Assist Interv. 2005;8(Pt 1):893-901.

PMID:
16685931
29.

Robust incremental compensation of the light attenuation with depth in 3D fluorescence microscopy.

Kervrann C, Legland D, Pardini L.

J Microsc. 2004 Jun;214(Pt 3):297-314.

30.

Three-dimensional binding of epidermal growth factor peptides in colonic tissues produced from rotating bioreactor.

Kaeffer B, Trubuil A, Kervrann C, Pardini L, Cherbut C.

In Vitro Cell Dev Biol Anim. 2002 Sep;38(8):436-9.

PMID:
12605536
31.

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