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Items: 15

1.

Development of coupling controlled polymerizations by adapter-ligation in mate-pair sequencing for detection of various genomic variants in one single assay.

Dong Z, Zhao X, Li Q, Yang Z, Xi Y, Alexeev A, Shen H, Wang O, Ruan J, Ren H, Wei H, Qi X, Li J, Zhu X, Zhang Y, Dai P, Kong X, Kirkconnell K, Alferov O, Giles S, Yamtich J, Kermani BG, Dong C, Liu P, Mi Z, Zhang W, Xu X, Drmanac R, Choy KW, Jiang Y.

DNA Res. 2019 Aug 1;26(4):313-325. doi: 10.1093/dnares/dsz011.

2.

Crystal Genetics, Inc.

Kermani BG.

Per Med. 2016 Jul;13(4):287-290. doi: 10.2217/pme-2016-0036. Epub 2016 Jun 14.

PMID:
29749808
3.

Analytical and Clinical Validation of a Digital Sequencing Panel for Quantitative, Highly Accurate Evaluation of Cell-Free Circulating Tumor DNA.

Lanman RB, Mortimer SA, Zill OA, Sebisanovic D, Lopez R, Blau S, Collisson EA, Divers SG, Hoon DS, Kopetz ES, Lee J, Nikolinakos PG, Baca AM, Kermani BG, Eltoukhy H, Talasaz A.

PLoS One. 2015 Oct 16;10(10):e0140712. doi: 10.1371/journal.pone.0140712. eCollection 2015.

4.

Detection and phasing of single base de novo mutations in biopsies from human in vitro fertilized embryos by advanced whole-genome sequencing.

Peters BA, Kermani BG, Alferov O, Agarwal MR, McElwain MA, Gulbahce N, Hayden DM, Tang YT, Zhang RY, Tearle R, Crain B, Prates R, Berkeley A, Munné S, Drmanac R.

Genome Res. 2015 Mar;25(3):426-34. doi: 10.1101/gr.181255.114. Epub 2015 Feb 11.

5.

Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells.

Peters BA, Kermani BG, Sparks AB, Alferov O, Hong P, Alexeev A, Jiang Y, Dahl F, Tang YT, Haas J, Robasky K, Zaranek AW, Lee JH, Ball MP, Peterson JE, Perazich H, Yeung G, Liu J, Chen L, Kennemer MI, Pothuraju K, Konvicka K, Tsoupko-Sitnikov M, Pant KP, Ebert JC, Nilsen GB, Baccash J, Halpern AL, Church GM, Drmanac R.

Nature. 2012 Jul 11;487(7406):190-5. doi: 10.1038/nature11236.

6.

Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays.

Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen GB, Yeung G, Dahl F, Fernandez A, Staker B, Pant KP, Baccash J, Borcherding AP, Brownley A, Cedeno R, Chen L, Chernikoff D, Cheung A, Chirita R, Curson B, Ebert JC, Hacker CR, Hartlage R, Hauser B, Huang S, Jiang Y, Karpinchyk V, Koenig M, Kong C, Landers T, Le C, Liu J, McBride CE, Morenzoni M, Morey RE, Mutch K, Perazich H, Perry K, Peters BA, Peterson J, Pethiyagoda CL, Pothuraju K, Richter C, Rosenbaum AM, Roy S, Shafto J, Sharanhovich U, Shannon KW, Sheppy CG, Sun M, Thakuria JV, Tran A, Vu D, Zaranek AW, Wu X, Drmanac S, Oliphant AR, Banyai WC, Martin B, Ballinger DG, Church GM, Reid CA.

Science. 2010 Jan 1;327(5961):78-81. doi: 10.1126/science.1181498. Epub 2009 Nov 5.

7.

Using Support Vector Machine Regression to Model the Retention of Peptides in Immobilized Metal-affinity Chromatography.

Kermani BG, Kozlov I, Melnyk P, Zhao C, Hachmann J, Barker D, Lebl M.

Sens Actuators B Chem. 2007 Jul 16;125(1):149-157.

8.

Retention of histidine-containing peptides on a nickel affinity column.

Kozlov IA, Kermani BG, Melnyk PC, Barker DL, Zhao C, Hachmann JP, Lebl M.

J Chromatogr Sci. 2007 Apr;45(4):207-11.

PMID:
17504569
9.

A multiplexed protein kinase assay.

Shults MD, Kozlov IA, Nelson N, Kermani BG, Melnyk PC, Shevchenko V, Srinivasan A, Musmacker J, Hachmann JP, Barker DL, Lebl M, Zhao C.

Chembiochem. 2007 May 25;8(8):933-42.

PMID:
17471478
10.

High-throughput SNP genotyping on universal bead arrays.

Shen R, Fan JB, Campbell D, Chang W, Chen J, Doucet D, Yeakley J, Bibikova M, Wickham Garcia E, McBride C, Steemers F, Garcia F, Kermani BG, Gunderson K, Oliphant A.

Mutat Res. 2005 Jun 3;573(1-2):70-82. Review.

PMID:
15829238
11.

A highly informative SNP linkage panel for human genetic studies.

Murray SS, Oliphant A, Shen R, McBride C, Steeke RJ, Shannon SG, Rubano T, Kermani BG, Fan JB, Chee MS, Hansen MS.

Nat Methods. 2004 Nov;1(2):113-7. Epub 2004 Oct 21.

PMID:
15782173
12.

Highly parallel SNP genotyping.

Fan JB, Oliphant A, Shen R, Kermani BG, Garcia F, Gunderson KL, Hansen M, Steemers F, Butler SL, Deloukas P, Galver L, Hunt S, McBride C, Bibikova M, Rubano T, Chen J, Wickham E, Doucet D, Chang W, Campbell D, Zhang B, Kruglyak S, Bentley D, Haas J, Rigault P, Zhou L, Stuelpnagel J, Chee MS.

Cold Spring Harb Symp Quant Biol. 2003;68:69-78. No abstract available.

PMID:
15338605
13.

Decoding randomly ordered DNA arrays.

Gunderson KL, Kruglyak S, Graige MS, Garcia F, Kermani BG, Zhao C, Che D, Dickinson T, Wickham E, Bierle J, Doucet D, Milewski M, Yang R, Siegmund C, Haas J, Zhou L, Oliphant A, Fan JB, Barnard S, Chee MS.

Genome Res. 2004 May;14(5):870-7. Epub 2004 Apr 12.

14.

Using neural networks and genetic algorithms to enhance performance in an electronic nose.

Kermani BG, Schiffman SS, Nagle HT.

IEEE Trans Biomed Eng. 1999 Apr;46(4):429-39.

PMID:
10217881
15.

Analysis of medication off-odors using an electronic nose.

Schiffman SS, Kermani BG, Nagle HT.

Chem Senses. 1997 Apr;22(2):119-28.

PMID:
9146901

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